Wall clock time and date at job start Tue Mar 31 2020 16:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47133 * 2 1 4 4 C 1.38235 * 119.99794 * 90.00695 * 3 2 1 5 5 C 1.38232 * 120.00073 * 180.02562 * 4 3 2 6 6 C 1.38239 * 119.99810 * 359.94491 * 5 4 3 7 7 C 1.50704 * 119.99763 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47288 * 0.02562 * 7 6 5 9 9 C 1.53002 * 109.46934 * 120.00124 * 7 6 5 10 10 C 1.50697 * 109.47022 * 239.99898 * 7 6 5 11 11 O 1.21284 * 120.00482 * 0.02562 * 10 7 6 12 12 N 1.34784 * 119.99678 * 179.97438 * 10 7 6 13 13 C 1.47422 * 125.65001 * 0.05092 * 12 10 7 14 14 C 1.54911 * 104.83193 * 204.08992 * 13 12 10 15 15 C 1.55163 * 101.57731 * 322.98767 * 14 13 12 16 16 H 1.08998 * 110.87409 * 277.06328 * 15 14 13 17 17 N 1.46499 * 110.71543 * 153.86800 * 15 14 13 18 18 C 1.46499 * 120.00107 * 306.47225 * 17 15 14 19 19 C 1.36939 * 120.00349 * 126.47667 * 17 15 14 20 20 H 1.07996 * 119.99449 * 343.26691 * 19 17 15 21 21 C 1.38806 * 120.00356 * 163.53856 * 19 17 15 22 22 N 1.31619 * 120.00193 * 343.89426 * 21 19 17 23 23 Si 1.86800 * 120.00013 * 163.89130 * 21 19 17 24 24 H 1.48499 * 109.47267 * 359.97438 * 23 21 19 25 25 H 1.48508 * 109.47059 * 120.00269 * 23 21 19 26 26 H 1.48501 * 109.47213 * 239.99996 * 23 21 19 27 27 C 1.47021 * 125.64347 * 180.02562 * 12 10 7 28 28 C 1.38231 * 120.00201 * 0.28084 * 6 5 4 29 29 C 1.38235 * 120.00208 * 269.97207 * 3 2 1 30 30 H 1.09007 * 109.46934 * 59.99622 * 1 2 3 31 31 H 1.08997 * 109.47114 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47119 * 299.99905 * 1 2 3 33 33 H 1.09002 * 109.47119 * 240.00095 * 2 1 3 34 34 H 1.08999 * 109.47426 * 119.99998 * 2 1 3 35 35 H 1.08002 * 120.00349 * 359.96423 * 4 3 2 36 36 H 1.08000 * 120.00280 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.47266 * 300.00370 * 9 7 6 38 38 H 1.09007 * 109.46826 * 60.00071 * 9 7 6 39 39 H 1.09002 * 109.47300 * 179.97438 * 9 7 6 40 40 H 1.09006 * 110.36396 * 322.92192 * 13 12 10 41 41 H 1.09000 * 110.37060 * 85.13844 * 13 12 10 42 42 H 1.09001 * 111.00320 * 204.91459 * 14 13 12 43 43 H 1.09002 * 111.00581 * 81.05932 * 14 13 12 44 44 H 1.09005 * 109.47634 * 264.70555 * 18 17 15 45 45 H 1.09004 * 109.47355 * 24.70578 * 18 17 15 46 46 H 1.09004 * 109.47121 * 144.70121 * 18 17 15 47 47 H 0.96996 * 120.00572 * 180.02562 * 22 21 19 48 48 H 1.08996 * 109.88761 * 59.56662 * 27 12 10 49 49 H 1.08999 * 110.01490 * 298.46298 * 27 12 10 50 50 H 1.08003 * 120.00265 * 179.72719 * 28 6 5 51 51 H 1.07994 * 119.99863 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7231 3.3758 1.1972 6 6 2.9539 4.0273 0.0001 7 6 3.4563 5.4482 0.0002 8 1 3.5774 5.7907 1.0278 9 6 4.8044 5.5125 -0.7206 10 6 2.4639 6.3319 -0.7107 11 8 1.4485 5.8550 -1.1716 12 7 2.7044 7.6524 -0.8334 13 6 3.8924 8.3605 -0.3230 14 6 3.4339 9.8299 -0.1489 15 6 2.4945 10.0098 -1.3706 16 1 3.0658 10.2472 -2.2681 17 7 1.4935 11.0463 -1.1064 18 6 0.6558 10.9670 0.0928 19 6 1.3408 12.0894 -1.9805 20 1 2.1128 12.3047 -2.7044 21 6 0.1964 12.8735 -1.9322 22 7 -0.8678 12.4457 -1.2866 23 14 0.1667 14.5359 -2.7836 24 1 1.4790 14.7829 -3.4333 25 1 -0.9050 14.5465 -3.8116 26 1 -0.0975 15.6002 -1.7823 27 6 1.8255 8.6251 -1.4989 28 6 2.7190 3.3774 -1.1971 29 6 2.2632 2.0723 -1.1971 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0824 1.5634 2.1325 36 1 2.9028 3.8850 2.1325 37 1 5.5221 4.8733 -0.2065 38 1 4.6835 5.1699 -1.7484 39 1 5.1675 6.5403 -0.7210 40 1 4.2000 7.9430 0.6358 41 1 4.7091 8.2988 -1.0423 42 1 4.2817 10.5128 -0.2039 43 1 2.8887 9.9609 0.7858 44 1 -0.2914 10.4887 -0.1566 45 1 1.1685 10.3816 0.8561 46 1 0.4670 11.9716 0.4712 47 1 -1.6676 12.9933 -1.2532 48 1 0.8505 8.6378 -1.0118 49 1 1.7107 8.3652 -2.5512 50 1 2.8951 3.8879 -2.1324 51 1 2.0833 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972555975.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:49 Heat of formation + Delta-G solvation = -7.316720 kcal Electronic energy + Delta-G solvation = -28402.784084 eV Core-core repulsion = 24687.728130 eV Total energy + Delta-G solvation = -3715.055954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.54545 -40.22061 -38.86025 -36.59216 -36.02860 -33.89186 -33.09628 -31.81075 -31.18415 -29.83250 -28.96310 -28.09883 -26.22563 -25.17167 -24.09825 -23.69186 -23.14715 -21.60666 -20.86540 -20.11430 -18.97815 -18.09789 -17.45117 -17.19562 -16.80485 -16.52161 -16.22861 -15.74474 -15.51304 -15.09697 -15.06312 -14.67719 -14.57997 -14.47370 -14.28217 -14.13471 -13.97901 -13.74695 -13.67416 -13.36346 -13.17182 -13.03819 -12.81468 -12.70398 -12.58227 -12.51362 -12.39597 -12.22427 -12.14800 -12.07080 -12.01861 -11.75819 -11.65451 -11.63132 -11.40611 -10.78306 -10.63767 -9.76774 -9.63836 -9.40696 -8.90323 -7.85196 -5.29339 0.40698 0.55119 1.46743 1.47860 1.58622 1.62564 1.99094 2.50807 2.86956 3.26905 3.50200 3.55481 3.67074 3.82951 3.91137 3.94944 4.10251 4.13054 4.19715 4.25777 4.28160 4.35268 4.40101 4.44408 4.51299 4.58287 4.66993 4.68897 4.72148 4.75093 4.89096 4.89370 4.91024 5.04089 5.04647 5.06454 5.16030 5.20620 5.21806 5.25491 5.28251 5.33063 5.37255 5.43749 5.54019 5.61620 5.70192 5.71984 5.74862 6.14552 6.27209 6.59524 7.10282 7.16691 7.83099 8.25545 9.19017 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022032 B = 0.002346 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.584461 B =11930.457177 C =12561.369534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.090 4.090 4 C -0.127 4.127 5 C -0.116 4.116 6 C -0.086 4.086 7 C -0.056 4.056 8 H 0.126 0.874 9 C -0.142 4.142 10 C 0.521 3.479 11 O -0.588 6.588 12 N -0.611 5.611 13 C 0.103 3.897 14 C -0.141 4.141 15 C 0.165 3.835 16 H 0.084 0.916 17 N -0.604 5.604 18 C 0.182 3.818 19 C -0.260 4.260 20 H 0.083 0.917 21 C -0.060 4.060 22 N -0.943 5.943 23 Si 0.972 3.028 24 H -0.261 1.261 25 H -0.298 1.298 26 H -0.292 1.292 27 C 0.098 3.902 28 C -0.100 4.100 29 C -0.135 4.135 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.067 0.933 44 H -0.011 1.011 45 H 0.032 0.968 46 H 0.024 0.976 47 H 0.247 0.753 48 H 0.029 0.971 49 H 0.039 0.961 50 H 0.103 0.897 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.169 -21.533 6.650 27.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.090 4.090 4 C -0.145 4.145 5 C -0.134 4.134 6 C -0.087 4.087 7 C -0.077 4.077 8 H 0.144 0.856 9 C -0.199 4.199 10 C 0.311 3.689 11 O -0.468 6.468 12 N -0.344 5.344 13 C -0.018 4.018 14 C -0.181 4.181 15 C 0.057 3.943 16 H 0.102 0.898 17 N -0.325 5.325 18 C 0.037 3.963 19 C -0.390 4.390 20 H 0.100 0.900 21 C -0.255 4.255 22 N -0.590 5.590 23 Si 0.800 3.200 24 H -0.185 1.185 25 H -0.225 1.225 26 H -0.219 1.219 27 C -0.028 4.028 28 C -0.118 4.118 29 C -0.153 4.153 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.085 0.915 44 H 0.007 0.993 45 H 0.050 0.950 46 H 0.043 0.957 47 H 0.056 0.944 48 H 0.048 0.952 49 H 0.058 0.942 50 H 0.121 0.879 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 14.484 -21.748 6.428 26.909 hybrid contribution -1.283 1.207 -0.844 1.953 sum 13.201 -20.541 5.584 25.048 Atomic orbital electron populations 1.21751 0.94850 1.02366 1.01483 1.20570 0.95983 0.91394 1.03844 1.20195 0.98439 0.97429 0.92928 1.21252 1.00056 0.94881 0.98316 1.21281 0.99226 0.95406 0.97506 1.19494 1.00888 0.94368 0.93903 1.20267 0.94946 0.90390 1.02107 0.85610 1.21943 0.93243 1.04673 1.00009 1.21027 0.87160 0.81152 0.79608 1.90695 1.30517 1.74385 1.51207 1.48593 1.23288 1.06321 1.56240 1.22708 0.87088 0.90982 1.01054 1.23248 1.00051 0.96064 0.98711 1.21574 0.89849 0.84848 0.98066 0.89771 1.44208 1.41021 1.24168 1.23075 1.20468 0.91442 0.97876 0.86541 1.19712 1.01048 1.04909 1.13360 0.89966 1.25762 0.94883 1.03287 1.01536 1.70318 1.02647 1.37566 1.48494 0.85126 0.77733 0.79794 0.77308 1.18478 1.22541 1.21851 1.22466 0.94007 0.90765 0.95541 1.20935 0.98583 0.94726 0.97533 1.21167 1.00782 0.94779 0.98526 0.93906 0.90738 0.93090 0.90342 0.89504 0.83995 0.84081 0.89195 0.93233 0.89415 0.87549 0.88341 0.87878 0.91468 0.99252 0.94956 0.95693 0.94395 0.95199 0.94208 0.87871 0.85559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.89 71.98 0.71 -1.50 16 2 C -0.08 -1.17 6.06 29.85 0.18 -0.99 16 3 C -0.09 -1.81 5.13 -19.87 -0.10 -1.91 16 4 C -0.13 -2.45 9.70 22.27 0.22 -2.24 16 5 C -0.12 -2.42 9.67 22.27 0.22 -2.20 16 6 C -0.09 -2.09 4.40 -19.86 -0.09 -2.18 16 7 C -0.06 -1.22 2.25 -12.29 -0.03 -1.24 16 8 H 0.13 2.08 7.58 -2.39 -0.02 2.07 16 9 C -0.14 -2.22 8.82 71.98 0.63 -1.58 16 10 C 0.52 16.71 7.08 87.65 0.62 17.34 16 11 O -0.59 -24.94 15.42 -3.04 -0.05 -24.98 16 12 N -0.61 -18.85 3.32 -811.79 -2.70 -21.55 16 13 C 0.10 2.16 5.14 86.86 0.45 2.60 16 14 C -0.14 -3.87 6.59 31.99 0.21 -3.66 16 15 C 0.17 6.28 3.45 46.18 0.16 6.44 16 16 H 0.08 3.09 7.89 -2.39 -0.02 3.07 16 17 N -0.60 -29.61 2.94 -696.13 -2.05 -31.65 16 18 C 0.18 9.13 7.80 127.77 1.00 10.13 16 19 C -0.26 -14.00 9.68 84.03 0.81 -13.19 16 20 H 0.08 4.18 7.80 -2.91 -0.02 4.16 16 21 C -0.06 -3.38 5.06 84.86 0.43 -2.96 16 22 N -0.94 -56.91 10.51 21.65 0.23 -56.68 16 23 Si 0.97 45.01 29.58 68.60 2.03 47.03 16 24 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 26 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 27 C 0.10 3.91 6.51 86.73 0.56 4.48 16 28 C -0.10 -2.64 7.92 22.27 0.18 -2.46 16 29 C -0.13 -3.15 9.70 22.27 0.22 -2.93 16 30 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 34 H 0.09 0.97 8.09 -2.39 -0.02 0.95 16 35 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.14 2.21 7.95 -2.91 -0.02 2.19 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 0.91 7.40 -2.38 -0.02 0.89 16 39 H 0.09 1.09 4.99 -2.39 -0.01 1.08 16 40 H 0.11 1.54 7.36 -2.38 -0.02 1.53 16 41 H 0.10 1.56 7.07 -2.39 -0.02 1.55 16 42 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.07 2.02 6.06 -2.39 -0.01 2.00 16 44 H -0.01 -0.63 7.43 -2.38 -0.02 -0.64 16 45 H 0.03 1.39 6.03 -2.38 -0.01 1.37 16 46 H 0.02 1.34 6.98 -2.38 -0.02 1.32 16 47 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 48 H 0.03 1.43 7.13 -2.39 -0.02 1.41 16 49 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.10 2.92 7.52 -2.91 -0.02 2.90 16 51 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -74.77 396.60 4.74 -70.03 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.90 Total: 15.86 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 6.38 Total: 1.95 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -4.52 Total: -109.88 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.05 Total: -24.98 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -74.77 4.74 -70.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972555975.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.710 kcal (2) G-P(sol) polarization free energy of solvation -74.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds