Wall clock time and date at job start Tue Mar 31 2020 16:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50700 * 109.46656 * 2 1 4 4 C 1.38234 * 119.99763 * 90.00410 * 3 2 1 5 5 C 1.38236 * 119.99548 * 179.97438 * 4 3 2 6 6 C 1.38236 * 120.00614 * 359.95395 * 5 4 3 7 7 C 1.50696 * 120.00410 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.47268 * 359.97438 * 7 6 5 9 9 C 1.53004 * 109.47131 * 240.00051 * 7 6 5 10 10 C 1.50699 * 109.47369 * 119.99621 * 7 6 5 11 11 O 1.21286 * 119.99946 * 0.02562 * 10 7 6 12 12 N 1.34771 * 120.00046 * 179.97438 * 10 7 6 13 13 C 1.47429 * 125.65105 * 359.97438 * 12 10 7 14 14 C 1.54904 * 104.83127 * 155.90936 * 13 12 10 15 15 C 1.55151 * 101.58514 * 37.00955 * 14 13 12 16 16 H 1.09003 * 110.72012 * 83.03731 * 15 14 13 17 17 N 1.46504 * 110.72379 * 206.13390 * 15 14 13 18 18 C 1.46499 * 119.99742 * 58.54562 * 17 15 14 19 19 C 1.36934 * 120.00106 * 238.55090 * 17 15 14 20 20 H 1.08003 * 119.99909 * 334.75414 * 19 17 15 21 21 C 1.38815 * 120.00151 * 154.75801 * 19 17 15 22 22 N 1.31622 * 119.99508 * 4.33835 * 21 19 17 23 23 Si 1.86797 * 120.00036 * 184.33550 * 21 19 17 24 24 H 1.48506 * 109.47095 * 90.00165 * 23 21 19 25 25 H 1.48502 * 109.47024 * 209.99822 * 23 21 19 26 26 H 1.48499 * 109.47257 * 330.00226 * 23 21 19 27 27 C 1.47023 * 125.64963 * 180.02562 * 12 10 7 28 28 C 1.38232 * 119.99482 * 0.27464 * 6 5 4 29 29 C 1.38235 * 120.00179 * 269.97302 * 3 2 1 30 30 H 1.08998 * 109.46937 * 299.99585 * 1 2 3 31 31 H 1.08994 * 109.46915 * 60.00256 * 1 2 3 32 32 H 1.08995 * 109.46745 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46937 * 240.00415 * 2 1 3 34 34 H 1.08994 * 109.46915 * 119.99744 * 2 1 3 35 35 H 1.07997 * 120.00401 * 359.97438 * 4 3 2 36 36 H 1.08010 * 119.99700 * 179.97438 * 5 4 3 37 37 H 1.09004 * 109.47012 * 59.99694 * 9 7 6 38 38 H 1.08998 * 109.46839 * 179.97438 * 9 7 6 39 39 H 1.09004 * 109.46775 * 299.99972 * 9 7 6 40 40 H 1.09003 * 110.36199 * 37.06991 * 13 12 10 41 41 H 1.09001 * 110.36631 * 274.74973 * 13 12 10 42 42 H 1.09010 * 111.00163 * 278.93395 * 14 13 12 43 43 H 1.09001 * 111.00301 * 155.09263 * 14 13 12 44 44 H 1.09003 * 109.47237 * 264.51879 * 18 17 15 45 45 H 1.09002 * 109.47168 * 24.51821 * 18 17 15 46 46 H 1.09005 * 109.46989 * 144.51729 * 18 17 15 47 47 H 0.97005 * 119.99235 * 180.02562 * 22 21 19 48 48 H 1.09006 * 109.87856 * 61.60726 * 27 12 10 49 49 H 1.08996 * 109.88160 * 300.44316 * 27 12 10 50 50 H 1.08000 * 120.00201 * 179.72746 * 28 6 5 51 51 H 1.07996 * 119.99766 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7239 3.3756 1.1971 6 6 2.9556 4.0269 0.0000 7 6 3.4589 5.4473 0.0000 8 1 3.5791 5.7902 1.0277 9 6 2.4522 6.3451 -0.7222 10 6 4.7870 5.5097 -0.7094 11 8 5.2764 4.5001 -1.1701 12 7 5.4304 6.6875 -0.8328 13 6 4.9514 7.9857 -0.3241 14 6 6.2317 8.8401 -0.1499 15 6 7.0764 8.3881 -1.3703 16 1 6.7815 8.9337 -2.2667 17 7 8.5063 8.5649 -1.1052 18 6 9.1292 7.8872 0.0345 19 6 9.2606 9.3636 -1.9226 20 1 8.9555 9.5313 -2.9450 21 6 10.4176 9.9577 -1.4373 22 7 10.8357 9.6859 -0.2192 23 14 11.3809 11.1428 -2.5129 24 1 10.8792 12.5242 -2.2999 25 1 12.8205 11.0782 -2.1542 26 1 11.2088 10.7681 -3.9395 27 6 6.7257 6.8907 -1.4980 28 6 2.7207 3.3768 -1.1971 29 6 2.2632 2.0724 -1.1971 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0824 1.5635 2.1325 36 1 2.9035 3.8849 2.1325 37 1 1.4916 6.2999 -0.2090 38 1 2.8161 7.3725 -0.7217 39 1 2.3316 6.0023 -1.7499 40 1 4.4489 7.8554 0.6344 41 1 4.2798 8.4513 -1.0453 42 1 6.7373 8.6001 0.7856 43 1 6.0020 9.9041 -0.2061 44 1 9.1605 8.5651 0.8876 45 1 8.5468 7.0031 0.2942 46 1 10.1438 7.5892 -0.2301 47 1 11.6439 10.1014 0.1201 48 1 6.6491 6.6163 -2.5501 49 1 7.4915 6.2878 -1.0102 50 1 2.8975 3.8870 -2.1324 51 1 2.0833 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972555981.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:56 Heat of formation + Delta-G solvation = 9.218050 kcal Electronic energy + Delta-G solvation = -28329.359785 eV Core-core repulsion = 24615.020833 eV Total energy + Delta-G solvation = -3714.338952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.42269 -39.19725 -37.43031 -35.16565 -34.82303 -32.87573 -31.46711 -30.96892 -29.75457 -28.83280 -27.64087 -26.06748 -25.22889 -23.95308 -22.85170 -22.59904 -22.07608 -20.72982 -19.27823 -18.94927 -17.14569 -16.85991 -16.40559 -15.76472 -15.71456 -15.42999 -14.83650 -14.64846 -14.15672 -13.97931 -13.83561 -13.68476 -13.43603 -13.29062 -13.23284 -12.96507 -12.70273 -12.52870 -12.35287 -12.25200 -12.04186 -11.78431 -11.69810 -11.61200 -11.31968 -11.29162 -10.90401 -10.88656 -10.86290 -10.77750 -10.57031 -10.37725 -10.24877 -9.91727 -9.89783 -9.52228 -8.90285 -8.57583 -8.54703 -8.29909 -6.81417 -5.78289 -3.26136 1.26256 1.40781 2.84496 3.20594 3.35447 3.41996 3.43134 3.74749 4.43772 4.44676 4.56771 4.63414 4.72280 4.91506 4.93722 5.02754 5.06249 5.12829 5.13376 5.24612 5.30111 5.34617 5.42622 5.43970 5.49790 5.51776 5.60824 5.64269 5.66436 5.73617 5.77950 5.87927 5.88272 5.97432 5.99987 6.02137 6.05821 6.31323 6.37009 6.39363 6.55191 6.56033 6.59390 6.66507 6.84934 6.87156 6.96764 7.46403 7.72161 7.80986 7.82847 8.35693 8.41219 9.19921 9.80002 10.29643 11.26112 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.030742 B = 0.002177 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.588667 B =12860.940611 C =13052.881608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.121 4.121 5 C -0.110 4.110 6 C -0.067 4.067 7 C -0.067 4.067 8 H 0.101 0.899 9 C -0.147 4.147 10 C 0.528 3.472 11 O -0.538 6.538 12 N -0.611 5.611 13 C 0.098 3.902 14 C -0.152 4.152 15 C 0.174 3.826 16 H 0.078 0.922 17 N -0.590 5.590 18 C 0.163 3.837 19 C -0.260 4.260 20 H 0.070 0.930 21 C 0.007 3.993 22 N -0.907 5.907 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.086 3.914 28 C -0.080 4.080 29 C -0.120 4.120 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.026 0.974 45 H -0.005 1.005 46 H 0.054 0.946 47 H 0.253 0.747 48 H 0.059 0.941 49 H 0.073 0.927 50 H 0.118 0.882 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.916 -11.639 2.791 24.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.139 4.139 5 C -0.128 4.128 6 C -0.067 4.067 7 C -0.089 4.089 8 H 0.119 0.881 9 C -0.204 4.204 10 C 0.316 3.684 11 O -0.415 6.415 12 N -0.344 5.344 13 C -0.025 4.025 14 C -0.193 4.193 15 C 0.063 3.937 16 H 0.096 0.904 17 N -0.311 5.311 18 C 0.019 3.981 19 C -0.389 4.389 20 H 0.088 0.912 21 C -0.192 4.192 22 N -0.552 5.552 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.205 1.205 27 C -0.038 4.038 28 C -0.098 4.098 29 C -0.138 4.138 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.045 0.955 45 H 0.013 0.987 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.077 0.923 49 H 0.091 0.909 50 H 0.136 0.864 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -21.465 -12.190 2.631 24.824 hybrid contribution 0.712 0.779 -0.383 1.123 sum -20.752 -11.411 2.247 23.789 Atomic orbital electron populations 1.21742 0.94847 1.01517 1.02178 1.20532 0.96042 0.92885 1.02756 1.19850 0.99390 0.96049 0.93271 1.20897 1.00914 0.94763 0.97376 1.20975 0.99696 0.94913 0.97179 1.19303 0.99397 0.94410 0.93595 1.20229 0.93203 0.94063 1.01386 0.88101 1.21936 0.98276 0.99519 1.00703 1.20075 0.85998 0.82080 0.80290 1.90713 1.67896 1.33680 1.49175 1.48479 1.22218 1.07129 1.56619 1.22462 0.97818 0.83881 0.98328 1.23402 0.94675 0.99167 1.02043 1.21293 0.85662 0.90883 0.95840 0.90380 1.43870 1.01494 1.53958 1.31776 1.20885 0.95798 0.91710 0.89663 1.19228 1.05139 1.21757 0.92755 0.91204 1.25160 0.99260 0.98669 0.96076 1.70103 1.24187 1.44867 1.16046 0.86221 0.79006 0.81415 0.79706 1.21339 1.21680 1.20484 1.22761 0.83793 1.00608 0.96631 1.20879 0.96749 0.94544 0.97596 1.20952 1.00589 0.94831 0.97403 0.92602 0.92585 0.92556 0.91133 0.91168 0.86331 0.86217 0.91434 0.90865 0.91992 0.91333 0.91411 0.90634 0.90382 0.95517 0.98663 0.92741 0.93647 0.92267 0.90896 0.86389 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.90 37.16 0.37 -0.61 16 2 C -0.08 -0.67 6.06 -27.88 -0.17 -0.84 16 3 C -0.09 -0.90 5.13 -104.62 -0.54 -1.43 16 4 C -0.12 -1.27 9.70 -39.58 -0.38 -1.66 16 5 C -0.11 -1.23 9.67 -39.58 -0.38 -1.62 16 6 C -0.07 -0.83 4.39 -104.63 -0.46 -1.29 16 7 C -0.07 -0.80 2.25 -92.92 -0.21 -1.01 16 8 H 0.10 1.05 7.58 -51.93 -0.39 0.65 16 9 C -0.15 -1.38 8.81 37.16 0.33 -1.06 16 10 C 0.53 8.43 7.09 -10.99 -0.08 8.35 16 11 O -0.54 -10.65 15.45 5.55 0.09 -10.56 16 12 N -0.61 -9.64 3.32 -170.52 -0.57 -10.20 16 13 C 0.10 1.26 5.13 -2.53 -0.01 1.25 16 14 C -0.15 -2.47 6.65 -24.59 -0.16 -2.64 16 15 C 0.17 3.38 3.44 -66.10 -0.23 3.15 16 16 H 0.08 1.49 7.94 -51.93 -0.41 1.07 16 17 N -0.59 -14.35 2.94 -171.38 -0.50 -14.86 16 18 C 0.16 4.02 7.63 59.85 0.46 4.48 16 19 C -0.26 -6.93 9.61 -15.06 -0.14 -7.07 16 20 H 0.07 1.81 7.82 -52.48 -0.41 1.40 16 21 C 0.01 0.18 5.38 -17.43 -0.09 0.09 16 22 N -0.91 -25.89 10.11 55.49 0.56 -25.33 16 23 Si 0.91 21.43 29.56 -169.99 -5.02 16.41 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.09 1.61 6.39 -3.07 -0.02 1.59 16 28 C -0.08 -1.02 7.94 -39.58 -0.31 -1.33 16 29 C -0.12 -1.36 9.70 -39.58 -0.38 -1.75 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.12 1.12 7.95 -52.48 -0.42 0.70 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.64 4.99 -51.93 -0.26 0.38 16 39 H 0.06 0.61 7.37 -51.93 -0.38 0.23 16 40 H 0.07 0.73 7.36 -51.93 -0.38 0.35 16 41 H 0.07 0.74 7.07 -51.93 -0.37 0.38 16 42 H 0.07 1.35 7.28 -51.92 -0.38 0.98 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.03 0.70 7.45 -51.93 -0.39 0.31 16 45 H 0.00 -0.11 6.27 -51.93 -0.33 -0.44 16 46 H 0.05 1.47 7.01 -51.93 -0.36 1.11 16 47 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.07 1.54 6.11 -51.93 -0.32 1.22 16 50 H 0.12 1.52 7.52 -52.49 -0.39 1.13 16 51 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 396.80 15.07 5.98 5.98 Total: -1.00 -31.46 396.80 -10.45 -41.91 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -8.55 Total: 0.05 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.43 Total: -3.40 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.51 Total: -50.39 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.46 -10.45 -41.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972555981.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.127 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds