Wall clock time and date at job start Tue Mar 31 2020 16:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50700 * 109.46656 * 2 1 4 4 C 1.38234 * 119.99763 * 90.00410 * 3 2 1 5 5 C 1.38236 * 119.99548 * 179.97438 * 4 3 2 6 6 C 1.38236 * 120.00614 * 359.95395 * 5 4 3 7 7 C 1.50696 * 120.00410 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.47268 * 359.97438 * 7 6 5 9 9 C 1.53004 * 109.47131 * 240.00051 * 7 6 5 10 10 C 1.50699 * 109.47369 * 119.99621 * 7 6 5 11 11 O 1.21286 * 119.99946 * 0.02562 * 10 7 6 12 12 N 1.34771 * 120.00046 * 179.97438 * 10 7 6 13 13 C 1.47429 * 125.65105 * 359.97438 * 12 10 7 14 14 C 1.54904 * 104.83127 * 155.90936 * 13 12 10 15 15 C 1.55151 * 101.58514 * 37.00955 * 14 13 12 16 16 H 1.09003 * 110.72012 * 83.03731 * 15 14 13 17 17 N 1.46504 * 110.72379 * 206.13390 * 15 14 13 18 18 C 1.46499 * 119.99742 * 58.54562 * 17 15 14 19 19 C 1.36934 * 120.00106 * 238.55090 * 17 15 14 20 20 H 1.08003 * 119.99909 * 334.75414 * 19 17 15 21 21 C 1.38815 * 120.00151 * 154.75801 * 19 17 15 22 22 N 1.31622 * 119.99508 * 4.33835 * 21 19 17 23 23 Si 1.86797 * 120.00036 * 184.33550 * 21 19 17 24 24 H 1.48506 * 109.47095 * 90.00165 * 23 21 19 25 25 H 1.48502 * 109.47024 * 209.99822 * 23 21 19 26 26 H 1.48499 * 109.47257 * 330.00226 * 23 21 19 27 27 C 1.47023 * 125.64963 * 180.02562 * 12 10 7 28 28 C 1.38232 * 119.99482 * 0.27464 * 6 5 4 29 29 C 1.38235 * 120.00179 * 269.97302 * 3 2 1 30 30 H 1.08998 * 109.46937 * 299.99585 * 1 2 3 31 31 H 1.08994 * 109.46915 * 60.00256 * 1 2 3 32 32 H 1.08995 * 109.46745 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46937 * 240.00415 * 2 1 3 34 34 H 1.08994 * 109.46915 * 119.99744 * 2 1 3 35 35 H 1.07997 * 120.00401 * 359.97438 * 4 3 2 36 36 H 1.08010 * 119.99700 * 179.97438 * 5 4 3 37 37 H 1.09004 * 109.47012 * 59.99694 * 9 7 6 38 38 H 1.08998 * 109.46839 * 179.97438 * 9 7 6 39 39 H 1.09004 * 109.46775 * 299.99972 * 9 7 6 40 40 H 1.09003 * 110.36199 * 37.06991 * 13 12 10 41 41 H 1.09001 * 110.36631 * 274.74973 * 13 12 10 42 42 H 1.09010 * 111.00163 * 278.93395 * 14 13 12 43 43 H 1.09001 * 111.00301 * 155.09263 * 14 13 12 44 44 H 1.09003 * 109.47237 * 264.51879 * 18 17 15 45 45 H 1.09002 * 109.47168 * 24.51821 * 18 17 15 46 46 H 1.09005 * 109.46989 * 144.51729 * 18 17 15 47 47 H 0.97005 * 119.99235 * 180.02562 * 22 21 19 48 48 H 1.09006 * 109.87856 * 61.60726 * 27 12 10 49 49 H 1.08996 * 109.88160 * 300.44316 * 27 12 10 50 50 H 1.08000 * 120.00201 * 179.72746 * 28 6 5 51 51 H 1.07996 * 119.99766 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7239 3.3756 1.1971 6 6 2.9556 4.0269 0.0000 7 6 3.4589 5.4473 0.0000 8 1 3.5791 5.7902 1.0277 9 6 2.4522 6.3451 -0.7222 10 6 4.7870 5.5097 -0.7094 11 8 5.2764 4.5001 -1.1701 12 7 5.4304 6.6875 -0.8328 13 6 4.9514 7.9857 -0.3241 14 6 6.2317 8.8401 -0.1499 15 6 7.0764 8.3881 -1.3703 16 1 6.7815 8.9337 -2.2667 17 7 8.5063 8.5649 -1.1052 18 6 9.1292 7.8872 0.0345 19 6 9.2606 9.3636 -1.9226 20 1 8.9555 9.5313 -2.9450 21 6 10.4176 9.9577 -1.4373 22 7 10.8357 9.6859 -0.2192 23 14 11.3809 11.1428 -2.5129 24 1 10.8792 12.5242 -2.2999 25 1 12.8205 11.0782 -2.1542 26 1 11.2088 10.7681 -3.9395 27 6 6.7257 6.8907 -1.4980 28 6 2.7207 3.3768 -1.1971 29 6 2.2632 2.0724 -1.1971 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0824 1.5635 2.1325 36 1 2.9035 3.8849 2.1325 37 1 1.4916 6.2999 -0.2090 38 1 2.8161 7.3725 -0.7217 39 1 2.3316 6.0023 -1.7499 40 1 4.4489 7.8554 0.6344 41 1 4.2798 8.4513 -1.0453 42 1 6.7373 8.6001 0.7856 43 1 6.0020 9.9041 -0.2061 44 1 9.1605 8.5651 0.8876 45 1 8.5468 7.0031 0.2942 46 1 10.1438 7.5892 -0.2301 47 1 11.6439 10.1014 0.1201 48 1 6.6491 6.6163 -2.5501 49 1 7.4915 6.2878 -1.0102 50 1 2.8975 3.8870 -2.1324 51 1 2.0833 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972555981.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:56 Heat of formation + Delta-G solvation = -6.754983 kcal Electronic energy + Delta-G solvation = -28330.052428 eV Core-core repulsion = 24615.020833 eV Total energy + Delta-G solvation = -3715.031595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.54780 -40.22110 -38.84341 -36.57312 -36.02464 -33.88185 -33.07487 -31.80632 -31.23286 -29.79921 -28.91823 -28.10409 -26.22525 -25.16053 -24.05020 -23.68519 -23.13169 -21.61963 -20.85689 -20.12054 -18.98542 -18.11502 -17.46612 -17.22473 -16.79838 -16.46276 -16.18328 -15.72751 -15.49293 -15.11394 -14.98640 -14.69405 -14.59332 -14.46342 -14.31533 -14.21281 -14.01170 -13.76148 -13.40304 -13.25750 -13.21294 -13.06192 -12.85352 -12.72364 -12.52649 -12.50196 -12.38364 -12.23301 -12.15235 -12.05405 -12.00255 -11.81266 -11.63478 -11.61816 -11.46774 -10.78647 -10.61706 -9.76379 -9.63310 -9.40154 -8.79830 -7.85289 -5.34588 0.41330 0.55533 1.48116 1.48431 1.57424 1.62313 1.98468 2.50215 2.87487 3.28841 3.50571 3.57137 3.65872 3.83536 3.91884 3.95320 4.09335 4.13453 4.19434 4.25930 4.29240 4.34444 4.41405 4.44542 4.53358 4.59365 4.65527 4.69822 4.73875 4.76528 4.87250 4.90459 4.94036 5.02005 5.06944 5.09914 5.16050 5.20340 5.24083 5.26943 5.27772 5.38833 5.39991 5.41959 5.54697 5.63421 5.72366 5.74036 5.75355 6.14787 6.32202 6.58205 7.13043 7.16399 7.82967 8.28807 9.18525 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.030742 B = 0.002177 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.588667 B =12860.940611 C =13052.881608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.089 4.089 4 C -0.127 4.127 5 C -0.117 4.117 6 C -0.085 4.085 7 C -0.058 4.058 8 H 0.123 0.877 9 C -0.142 4.142 10 C 0.523 3.477 11 O -0.584 6.584 12 N -0.611 5.611 13 C 0.105 3.895 14 C -0.143 4.143 15 C 0.167 3.833 16 H 0.084 0.916 17 N -0.607 5.607 18 C 0.186 3.814 19 C -0.267 4.267 20 H 0.075 0.925 21 C -0.050 4.050 22 N -0.938 5.938 23 Si 0.972 3.028 24 H -0.281 1.281 25 H -0.297 1.297 26 H -0.270 1.270 27 C 0.098 3.902 28 C -0.099 4.099 29 C -0.134 4.134 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.051 0.949 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.056 0.944 43 H 0.091 0.909 44 H 0.006 0.994 45 H 0.011 0.989 46 H 0.020 0.980 47 H 0.248 0.752 48 H 0.051 0.949 49 H 0.041 0.959 50 H 0.105 0.895 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.641 -11.336 3.347 27.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.145 4.145 5 C -0.135 4.135 6 C -0.086 4.086 7 C -0.079 4.079 8 H 0.141 0.859 9 C -0.199 4.199 10 C 0.313 3.687 11 O -0.464 6.464 12 N -0.344 5.344 13 C -0.016 4.016 14 C -0.183 4.183 15 C 0.058 3.942 16 H 0.102 0.898 17 N -0.329 5.329 18 C 0.042 3.958 19 C -0.396 4.396 20 H 0.093 0.907 21 C -0.245 4.245 22 N -0.585 5.585 23 Si 0.800 3.200 24 H -0.208 1.208 25 H -0.224 1.224 26 H -0.195 1.195 27 C -0.028 4.028 28 C -0.117 4.117 29 C -0.152 4.152 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.075 0.925 43 H 0.110 0.890 44 H 0.025 0.975 45 H 0.029 0.971 46 H 0.039 0.961 47 H 0.057 0.943 48 H 0.069 0.931 49 H 0.060 0.940 50 H 0.123 0.877 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -24.252 -11.873 3.179 27.189 hybrid contribution 1.523 0.572 -0.592 1.731 sum -22.729 -11.301 2.587 25.515 Atomic orbital electron populations 1.21714 0.93811 1.02408 1.01982 1.20587 0.96865 0.91363 1.03359 1.20180 0.98609 0.97190 0.92950 1.21238 1.00248 0.94720 0.98313 1.21272 0.99344 0.95358 0.97514 1.19473 1.00169 0.95000 0.93926 1.20262 0.90925 0.94607 1.02060 0.85877 1.21943 0.98531 0.99336 1.00099 1.20929 0.87039 0.81125 0.79571 1.90689 1.69317 1.35315 1.51122 1.48550 1.21062 1.08496 1.56317 1.22660 0.96453 0.81589 1.00923 1.23241 0.95425 1.00628 0.99053 1.21477 0.83565 0.91389 0.97720 0.89762 1.44038 1.03643 1.53932 1.31281 1.20482 0.94372 0.91725 0.89247 1.19576 1.05475 1.21206 0.93370 0.90709 1.25917 1.00597 1.00495 0.97448 1.70278 1.24515 1.46009 1.17691 0.85192 0.77026 0.79315 0.78424 1.20782 1.22393 1.19510 1.22372 0.84863 0.99388 0.96150 1.20937 0.97884 0.95349 0.97508 1.21164 1.00834 0.94669 0.98487 0.92514 0.93063 0.91134 0.90931 0.90193 0.84118 0.84257 0.89342 0.89592 0.92993 0.87903 0.88328 0.92539 0.89030 0.97523 0.97050 0.96080 0.94251 0.93092 0.94037 0.87656 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.90 71.99 0.71 -0.92 16 2 C -0.08 -1.19 6.06 29.85 0.18 -1.01 16 3 C -0.09 -1.75 5.13 -19.87 -0.10 -1.85 16 4 C -0.13 -2.42 9.70 22.27 0.22 -2.20 16 5 C -0.12 -2.40 9.67 22.27 0.22 -2.19 16 6 C -0.09 -2.02 4.39 -19.87 -0.09 -2.11 16 7 C -0.06 -1.23 2.25 -12.29 -0.03 -1.26 16 8 H 0.12 2.09 7.58 -2.38 -0.02 2.07 16 9 C -0.14 -2.23 8.81 71.98 0.63 -1.60 16 10 C 0.52 16.24 7.09 87.66 0.62 16.86 16 11 O -0.58 -23.57 15.45 -3.05 -0.05 -23.62 16 12 N -0.61 -18.43 3.32 -811.79 -2.70 -21.13 16 13 C 0.11 2.34 5.13 86.85 0.45 2.79 16 14 C -0.14 -4.38 6.65 31.98 0.21 -4.17 16 15 C 0.17 6.42 3.44 46.18 0.16 6.58 16 16 H 0.08 3.12 7.94 -2.39 -0.02 3.10 16 17 N -0.61 -30.00 2.94 -696.14 -2.05 -32.05 16 18 C 0.19 9.51 7.63 127.77 0.98 10.48 16 19 C -0.27 -14.35 9.61 84.03 0.81 -13.55 16 20 H 0.08 3.87 7.82 -2.91 -0.02 3.85 16 21 C -0.05 -2.75 5.38 84.86 0.46 -2.29 16 22 N -0.94 -55.00 10.11 21.65 0.22 -54.78 16 23 Si 0.97 44.47 29.56 68.60 2.03 46.50 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 27 C 0.10 3.66 6.39 86.73 0.55 4.22 16 28 C -0.10 -2.52 7.94 22.27 0.18 -2.34 16 29 C -0.13 -3.01 9.70 22.27 0.22 -2.79 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 34 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 35 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.14 2.20 7.95 -2.91 -0.02 2.18 16 37 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.09 1.11 4.99 -2.39 -0.01 1.10 16 39 H 0.05 0.93 7.37 -2.38 -0.02 0.91 16 40 H 0.10 1.69 7.36 -2.39 -0.02 1.67 16 41 H 0.10 1.69 7.07 -2.39 -0.02 1.67 16 42 H 0.06 1.96 7.28 -2.38 -0.02 1.94 16 43 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.01 0.35 7.45 -2.39 -0.02 0.33 16 45 H 0.01 0.52 6.27 -2.39 -0.01 0.51 16 46 H 0.02 1.17 7.01 -2.38 -0.02 1.16 16 47 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 48 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 49 H 0.04 1.81 6.11 -2.39 -0.01 1.80 16 50 H 0.11 2.83 7.52 -2.91 -0.02 2.81 16 51 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -71.03 396.80 4.72 -66.31 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.90 Total: 16.13 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 6.37 Total: 2.64 kcal Atomic # 7 Polarization: -103.44 SS G_CDS: -4.53 Total: -107.96 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.05 Total: -23.62 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -71.03 4.72 -66.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972555981.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.557 kcal (2) G-P(sol) polarization free energy of solvation -71.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds