Wall clock time and date at job start Tue Mar 31 2020 16:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47035 * 2 1 4 4 C 1.38245 * 119.99897 * 90.00005 * 3 2 1 5 5 C 1.38234 * 119.99673 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00346 * 359.95775 * 5 4 3 7 7 C 1.50703 * 120.00075 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47029 * 359.97438 * 7 6 5 9 9 C 1.53004 * 109.46646 * 239.99960 * 7 6 5 10 10 C 1.50693 * 109.47019 * 119.99956 * 7 6 5 11 11 O 1.21283 * 120.00637 * 26.83882 * 10 7 6 12 12 N 1.34780 * 119.99892 * 206.83189 * 10 7 6 13 13 C 1.47422 * 125.64851 * 174.37292 * 12 10 7 14 14 C 1.54911 * 104.83036 * 204.16834 * 13 12 10 15 15 C 1.55157 * 101.58241 * 322.99182 * 14 13 12 16 16 H 1.09000 * 110.87103 * 277.06851 * 15 14 13 17 17 N 1.46502 * 110.71953 * 153.86963 * 15 14 13 18 18 C 1.46497 * 119.99575 * 306.47398 * 17 15 14 19 19 C 1.36929 * 120.00117 * 126.47657 * 17 15 14 20 20 H 1.07998 * 120.00505 * 324.92701 * 19 17 15 21 21 C 1.38820 * 120.00042 * 145.19907 * 19 17 15 22 22 N 1.31612 * 120.00094 * 159.17792 * 21 19 17 23 23 Si 1.86794 * 119.99719 * 339.18374 * 21 19 17 24 24 H 1.48502 * 109.47641 * 90.58703 * 23 21 19 25 25 H 1.48501 * 109.47318 * 210.58899 * 23 21 19 26 26 H 1.48509 * 109.47275 * 330.58413 * 23 21 19 27 27 C 1.47030 * 125.64503 * 354.42173 * 12 10 7 28 28 C 1.38240 * 119.99921 * 0.27556 * 6 5 4 29 29 C 1.38233 * 119.99830 * 359.51076 * 28 6 5 30 30 H 1.09006 * 109.47452 * 299.99596 * 1 2 3 31 31 H 1.09003 * 109.47586 * 59.99966 * 1 2 3 32 32 H 1.08999 * 109.47003 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47439 * 239.99946 * 2 1 3 34 34 H 1.09003 * 109.47586 * 120.00033 * 2 1 3 35 35 H 1.08000 * 120.00019 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.99615 * 179.97438 * 5 4 3 37 37 H 1.08993 * 109.47384 * 302.43567 * 9 7 6 38 38 H 1.08998 * 109.47114 * 62.43724 * 9 7 6 39 39 H 1.09003 * 109.46555 * 182.43683 * 9 7 6 40 40 H 1.09000 * 110.36857 * 323.00893 * 13 12 10 41 41 H 1.09001 * 110.36639 * 85.33446 * 13 12 10 42 42 H 1.09004 * 111.00270 * 204.91423 * 14 13 12 43 43 H 1.08994 * 111.00629 * 81.06648 * 14 13 12 44 44 H 1.09003 * 109.47374 * 273.08599 * 18 17 15 45 45 H 1.09003 * 109.47313 * 33.08878 * 18 17 15 46 46 H 1.09005 * 109.47166 * 153.08573 * 18 17 15 47 47 H 0.96999 * 119.99852 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.88280 * 59.48341 * 27 12 10 49 49 H 1.08993 * 110.00645 * 298.38537 * 27 12 10 50 50 H 1.08002 * 120.00154 * 179.72950 * 28 6 5 51 51 H 1.08001 * 119.99850 * 180.25083 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2626 2.0725 1.1973 5 6 2.7239 3.3756 1.1972 6 6 2.9556 4.0268 0.0001 7 6 3.4590 5.4473 0.0001 8 1 3.5793 5.7901 1.0278 9 6 2.4523 6.3450 -0.7221 10 6 4.7871 5.5095 -0.7094 11 8 5.0583 4.6905 -1.5617 12 7 5.6734 6.4755 -0.3968 13 6 7.0461 6.5852 -0.9232 14 6 7.8147 7.4067 0.1416 15 6 6.7321 8.4225 0.5927 16 1 6.6849 9.2694 -0.0919 17 7 6.9872 8.8784 1.9614 18 6 7.1586 7.9008 3.0390 19 6 7.0653 10.2181 2.2334 20 1 7.4963 10.8922 1.5081 21 6 6.5957 10.7091 3.4440 22 7 7.0177 11.8732 3.8902 23 14 5.3650 9.7175 4.4397 24 1 6.0917 8.8277 5.3806 25 1 4.4905 10.6406 5.2068 26 1 4.5341 8.8959 3.5232 27 6 5.4318 7.5940 0.5266 28 6 2.7206 3.3768 -1.1971 29 6 2.2636 2.0722 -1.1971 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0822 1.5635 2.1325 36 1 2.9035 3.8849 2.1325 37 1 2.2991 5.9765 -1.7363 38 1 1.5043 6.3338 -0.1843 39 1 2.8365 7.3644 -0.7601 40 1 7.4905 5.5960 -1.0328 41 1 7.0451 7.1095 -1.8788 42 1 8.6696 7.9177 -0.3014 43 1 8.1273 6.7742 0.9724 44 1 6.1839 7.6394 3.4509 45 1 7.6383 7.0052 2.6442 46 1 7.7813 8.3305 3.8237 47 1 6.6892 12.2164 4.7359 48 1 5.1857 7.2106 1.5168 49 1 4.6157 8.2139 0.1558 50 1 2.8975 3.8870 -2.1324 51 1 2.0839 1.5630 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972555982.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:00 Heat of formation + Delta-G solvation = 4.993461 kcal Electronic energy + Delta-G solvation = -28737.785755 eV Core-core repulsion = 25023.263611 eV Total energy + Delta-G solvation = -3714.522144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.44757 -39.24992 -37.65164 -35.19316 -34.89231 -32.85949 -31.80139 -30.96766 -30.28987 -28.62845 -28.20966 -26.25669 -25.21893 -24.05061 -23.07963 -22.78088 -21.91468 -20.63177 -19.57250 -18.88157 -17.23598 -17.03724 -16.39851 -16.02053 -15.58641 -15.46096 -15.08725 -14.75431 -14.34720 -14.00833 -13.90169 -13.71666 -13.62958 -13.47247 -13.21626 -12.99869 -12.81710 -12.60827 -12.56560 -12.35697 -12.20374 -11.92391 -11.85637 -11.73464 -11.57457 -11.47512 -11.32223 -11.02749 -10.90046 -10.87522 -10.82384 -10.53167 -10.35643 -10.06065 -9.71981 -9.58026 -8.89448 -8.66292 -8.59405 -8.39939 -7.02582 -6.09476 -3.53745 1.24502 1.41186 2.74795 3.13151 3.27564 3.40102 3.42555 3.74021 4.43285 4.48091 4.51398 4.63827 4.70372 4.88639 4.94342 4.97059 5.04217 5.08996 5.12674 5.15352 5.20481 5.31371 5.31892 5.42741 5.45997 5.47022 5.58725 5.63134 5.64744 5.70702 5.72354 5.78642 5.87203 5.90264 5.98316 6.01214 6.05899 6.08749 6.10597 6.26841 6.32072 6.37663 6.45697 6.53592 6.55485 6.61253 6.62967 6.75324 6.97067 7.70058 7.90267 8.24490 8.29847 8.82697 9.58569 9.94954 11.05994 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016669 B = 0.002922 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.368305 B = 9580.481161 C =10508.242603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.085 4.085 4 C -0.124 4.124 5 C -0.109 4.109 6 C -0.076 4.076 7 C -0.069 4.069 8 H 0.098 0.902 9 C -0.137 4.137 10 C 0.535 3.465 11 O -0.544 6.544 12 N -0.613 5.613 13 C 0.110 3.890 14 C -0.152 4.152 15 C 0.172 3.828 16 H 0.090 0.910 17 N -0.594 5.594 18 C 0.105 3.895 19 C -0.275 4.275 20 H 0.083 0.917 21 C 0.037 3.963 22 N -0.899 5.899 23 Si 0.885 3.115 24 H -0.286 1.286 25 H -0.302 1.302 26 H -0.273 1.273 27 C 0.073 3.927 28 C -0.075 4.075 29 C -0.124 4.124 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.006 0.994 45 H 0.036 0.964 46 H 0.059 0.941 47 H 0.265 0.735 48 H 0.068 0.932 49 H 0.066 0.934 50 H 0.126 0.874 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.215 -18.668 -8.137 22.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.142 4.142 5 C -0.127 4.127 6 C -0.076 4.076 7 C -0.091 4.091 8 H 0.116 0.884 9 C -0.194 4.194 10 C 0.323 3.677 11 O -0.422 6.422 12 N -0.346 5.346 13 C -0.013 4.013 14 C -0.192 4.192 15 C 0.063 3.937 16 H 0.108 0.892 17 N -0.315 5.315 18 C -0.040 4.040 19 C -0.403 4.403 20 H 0.101 0.899 21 C -0.164 4.164 22 N -0.540 5.540 23 Si 0.715 3.285 24 H -0.213 1.213 25 H -0.229 1.229 26 H -0.199 1.199 27 C -0.052 4.052 28 C -0.093 4.093 29 C -0.142 4.142 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.023 0.977 45 H 0.054 0.946 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.086 0.914 49 H 0.084 0.916 50 H 0.143 0.857 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.112 -18.985 -8.441 23.107 hybrid contribution -0.713 -0.348 0.890 1.192 sum -10.825 -19.333 -7.552 23.409 Atomic orbital electron populations 1.21743 0.94812 1.01525 1.02244 1.20530 0.96095 0.92861 1.02694 1.19876 0.99242 0.96068 0.93291 1.20907 1.01056 0.94778 0.97417 1.21034 0.99437 0.94885 0.97329 1.19376 1.00224 0.94376 0.93623 1.20218 0.93145 0.94119 1.01578 0.88419 1.21728 0.98152 0.98913 1.00610 1.20063 0.85062 0.79812 0.82745 1.90661 1.78111 1.40405 1.33041 1.48546 1.14074 1.26417 1.45590 1.22192 0.81486 1.00467 0.97143 1.23301 0.99071 0.98706 0.98119 1.21499 0.89372 0.94373 0.88464 0.89239 1.44084 1.81897 1.03293 1.02262 1.21334 0.97724 0.92844 0.92074 1.18828 1.35686 0.81988 1.03774 0.89903 1.25456 0.97778 0.95388 0.97784 1.69842 1.43226 1.20213 1.20734 0.86862 0.82817 0.79031 0.79821 1.21310 1.22941 1.19852 1.23022 1.01678 0.87637 0.92837 1.21014 0.95992 0.94392 0.97938 1.20983 1.00860 0.94991 0.97340 0.92570 0.92555 0.92544 0.91160 0.91187 0.86297 0.86142 0.91804 0.91216 0.91498 0.91120 0.91668 0.89970 0.90548 0.97662 0.94576 0.92277 0.92537 0.91400 0.91562 0.85655 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.15 0.37 -0.67 16 2 C -0.08 -0.68 6.06 -27.89 -0.17 -0.85 16 3 C -0.08 -0.91 5.13 -104.62 -0.54 -1.44 16 4 C -0.12 -1.36 9.70 -39.58 -0.38 -1.75 16 5 C -0.11 -1.32 9.67 -39.59 -0.38 -1.70 16 6 C -0.08 -1.00 4.66 -104.62 -0.49 -1.48 16 7 C -0.07 -0.92 2.39 -92.92 -0.22 -1.14 16 8 H 0.10 1.27 6.94 -51.93 -0.36 0.91 16 9 C -0.14 -1.55 9.02 37.16 0.34 -1.22 16 10 C 0.54 8.39 6.92 -10.99 -0.08 8.31 16 11 O -0.54 -9.81 14.88 5.55 0.08 -9.73 16 12 N -0.61 -9.42 3.33 -170.52 -0.57 -9.99 16 13 C 0.11 1.57 6.89 -2.53 -0.02 1.55 16 14 C -0.15 -2.29 6.61 -24.58 -0.16 -2.45 16 15 C 0.17 3.05 3.45 -66.10 -0.23 2.82 16 16 H 0.09 1.60 7.95 -51.93 -0.41 1.19 16 17 N -0.59 -12.93 2.55 -171.39 -0.44 -13.36 16 18 C 0.10 2.14 7.58 59.85 0.45 2.59 16 19 C -0.27 -7.17 9.86 -15.06 -0.15 -7.32 16 20 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 21 C 0.04 1.01 5.21 -17.43 -0.09 0.92 16 22 N -0.90 -26.38 13.97 55.49 0.78 -25.60 16 23 Si 0.89 21.32 24.33 -169.99 -4.14 17.18 16 24 H -0.29 -6.75 7.08 56.52 0.40 -6.35 16 25 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 26 H -0.27 -6.34 6.92 56.52 0.39 -5.95 16 27 C 0.07 1.18 5.95 -3.06 -0.02 1.17 16 28 C -0.08 -0.98 7.88 -39.58 -0.31 -1.29 16 29 C -0.12 -1.42 9.70 -39.58 -0.38 -1.80 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.12 1.31 7.95 -52.49 -0.42 0.89 16 37 H 0.06 0.71 7.29 -51.93 -0.38 0.33 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.76 7.29 -51.93 -0.38 0.38 16 40 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.08 1.19 6.00 -51.93 -0.31 0.88 16 44 H 0.01 0.11 5.13 -51.93 -0.27 -0.15 16 45 H 0.04 0.64 5.99 -51.93 -0.31 0.33 16 46 H 0.06 1.29 7.20 -51.93 -0.37 0.91 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.07 1.17 6.45 -51.93 -0.34 0.84 16 49 H 0.07 1.02 7.29 -51.93 -0.38 0.64 16 50 H 0.13 1.67 6.83 -52.49 -0.36 1.31 16 51 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 394.65 15.07 5.95 5.95 Total: -1.00 -30.44 394.65 -9.29 -39.73 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -8.49 Total: 1.56 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -2.46 Total: -5.74 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.23 Total: -48.95 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.14 Total: 17.18 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.44 -9.29 -39.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972555982.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.723 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds