Wall clock time and date at job start Tue Mar 31 2020 16:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50697 * 109.47161 * 2 1 4 4 C 1.38253 * 120.00283 * 89.99913 * 3 2 1 5 5 C 1.38220 * 120.00188 * 179.97438 * 4 3 2 6 6 C 1.38257 * 119.99778 * 0.02562 * 5 4 3 7 7 C 1.38208 * 120.00036 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00060 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46910 * 90.00113 * 8 7 6 10 10 O 1.21282 * 120.00098 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00299 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00258 * 180.02562 * 11 9 8 13 13 H 1.09005 * 110.77979 * 323.20973 * 12 11 9 14 14 C 1.54319 * 110.72094 * 86.45113 * 12 11 9 15 15 N 1.47023 * 107.40260 * 96.25062 * 14 12 11 16 16 C 1.36937 * 125.64986 * 178.90274 * 15 14 12 17 17 H 1.07997 * 120.00208 * 174.82861 * 16 15 14 18 18 C 1.38813 * 119.99793 * 354.82399 * 16 15 14 19 19 N 1.31616 * 120.00159 * 7.07449 * 18 16 15 20 20 Si 1.86806 * 119.99591 * 187.06666 * 18 16 15 21 21 H 1.48498 * 109.47072 * 94.99524 * 20 18 16 22 22 H 1.48511 * 109.46756 * 214.98714 * 20 18 16 23 23 H 1.48492 * 109.47457 * 334.99038 * 20 18 16 24 24 C 1.47424 * 108.70421 * 358.85973 * 15 14 12 25 25 C 1.54910 * 104.82982 * 24.13280 * 24 15 14 26 26 C 1.52993 * 111.00667 * 81.06212 * 25 24 15 27 27 C 1.53003 * 111.00497 * 204.88042 * 25 24 15 28 28 C 1.38221 * 119.99842 * 270.27527 * 3 2 1 29 29 H 1.09008 * 109.46885 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47338 * 299.99942 * 1 2 3 31 31 H 1.09004 * 109.47547 * 60.00688 * 1 2 3 32 32 H 1.09007 * 109.47496 * 239.99702 * 2 1 3 33 33 H 1.09000 * 109.47215 * 119.99988 * 2 1 3 34 34 H 1.08002 * 119.99847 * 0.02562 * 4 3 2 35 35 H 1.07997 * 120.00155 * 179.97438 * 5 4 3 36 36 H 1.08005 * 119.99643 * 179.97438 * 6 5 4 37 37 H 1.09002 * 109.47060 * 330.01069 * 8 7 6 38 38 H 1.08994 * 109.47672 * 210.00300 * 8 7 6 39 39 H 0.97005 * 119.99160 * 0.02562 * 11 9 8 40 40 H 1.09002 * 109.88635 * 336.75428 * 14 12 11 41 41 H 1.08996 * 109.88539 * 215.74315 * 14 12 11 42 42 H 0.96998 * 119.99800 * 179.97438 * 19 18 16 43 43 H 1.08996 * 110.36906 * 142.96528 * 24 15 14 44 44 H 1.09004 * 110.36971 * 265.29648 * 24 15 14 45 45 H 1.08999 * 109.47294 * 61.45492 * 26 25 24 46 46 H 1.08999 * 109.47508 * 181.45541 * 26 25 24 47 47 H 1.09007 * 109.47263 * 301.45516 * 26 25 24 48 48 H 1.08999 * 109.47278 * 58.54154 * 27 25 24 49 49 H 1.09001 * 109.46997 * 178.54683 * 27 25 24 50 50 H 1.09002 * 109.46483 * 298.54407 * 27 25 24 51 51 H 1.07994 * 120.00266 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0726 1.1973 5 6 2.7239 3.3755 1.1972 6 6 2.9544 4.0272 -0.0001 7 6 2.7230 3.3760 -1.1970 8 6 2.9736 4.0865 -2.5022 9 6 4.3965 3.8492 -2.9382 10 8 5.1343 3.1696 -2.2564 11 7 4.8493 4.3921 -4.0856 12 6 6.2324 4.1609 -4.5097 13 1 6.9026 4.1438 -3.6502 14 6 6.3444 2.8497 -5.3157 15 7 6.2825 3.2033 -6.7414 16 6 6.3694 2.3228 -7.7866 17 1 6.2292 2.6711 -8.7992 18 6 6.6377 0.9826 -7.5445 19 7 6.6706 0.5308 -6.3087 20 14 6.9519 -0.1798 -8.9727 21 1 8.4141 -0.2946 -9.2050 22 1 6.3949 -1.5188 -8.6528 23 1 6.2965 0.3498 -10.1954 24 6 6.1103 4.6627 -6.8595 25 6 6.6787 5.2373 -5.5380 26 6 8.2043 5.3378 -5.5950 27 6 6.0540 6.5967 -5.2174 28 6 2.2572 2.0743 -1.1970 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0831 1.5633 2.1326 35 1 2.9035 3.8848 2.1325 36 1 3.3144 5.0455 -0.0001 37 1 2.8073 5.1558 -2.3715 38 1 2.2922 3.7029 -3.2615 39 1 4.2593 4.9360 -4.6306 40 1 5.5172 2.1867 -5.0619 41 1 7.2928 2.3595 -5.0962 42 1 6.8578 -0.4058 -6.1396 43 1 6.6731 5.0434 -7.7117 44 1 5.0541 4.9133 -6.9588 45 1 8.4940 6.0147 -6.3986 46 1 8.5791 5.7197 -4.6454 47 1 8.6268 4.3504 -5.7816 48 1 4.9720 6.4902 -5.1399 49 1 6.4516 6.9653 -4.2718 50 1 6.2936 7.3030 -6.0123 51 1 2.0726 1.5668 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974743902.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:11 Heat of formation + Delta-G solvation = -1.893413 kcal Electronic energy + Delta-G solvation = -28813.252338 eV Core-core repulsion = 25098.431557 eV Total energy + Delta-G solvation = -3714.820782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.01900 -39.18801 -37.74596 -34.41671 -33.82837 -32.94944 -32.28961 -30.69074 -29.53771 -28.49999 -27.36143 -26.44647 -25.60690 -23.95936 -23.41804 -22.06651 -20.93437 -20.11733 -19.65687 -18.62857 -16.81974 -16.60241 -16.42643 -15.77919 -15.73242 -14.95964 -14.77545 -14.32745 -14.01615 -13.91017 -13.77044 -13.66729 -13.49103 -13.26138 -13.09706 -12.83157 -12.46772 -12.22660 -12.04506 -11.99068 -11.78723 -11.74250 -11.63412 -11.34585 -11.27802 -11.06087 -10.98584 -10.83372 -10.77410 -10.74641 -10.35354 -10.20689 -9.96974 -9.85805 -9.64178 -9.44052 -8.68638 -8.58592 -8.50866 -8.37613 -6.79968 -5.67937 -3.01758 1.41531 1.49486 3.09395 3.41431 3.46434 3.49013 3.55080 3.96919 4.51923 4.68172 4.72031 4.87358 4.95747 5.09900 5.16180 5.23133 5.28036 5.28896 5.30301 5.33292 5.44263 5.50540 5.55285 5.60213 5.64981 5.65959 5.82371 5.83029 5.84695 5.91545 6.04507 6.05423 6.15061 6.17340 6.18764 6.22473 6.26430 6.41956 6.51989 6.60627 6.62510 6.64735 6.69546 6.71022 6.79701 6.99142 7.09344 7.60082 7.67690 7.86048 8.01109 8.28484 8.71737 9.24108 9.85147 10.51201 11.42825 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010973 B = 0.003414 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.034752 B = 8200.501550 C =10170.640623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.081 4.081 4 C -0.122 4.122 5 C -0.119 4.119 6 C -0.111 4.111 7 C -0.055 4.055 8 C -0.104 4.104 9 C 0.512 3.488 10 O -0.531 6.531 11 N -0.713 5.713 12 C 0.126 3.874 13 H 0.085 0.915 14 C 0.175 3.825 15 N -0.602 5.602 16 C -0.231 4.231 17 H 0.077 0.923 18 C -0.005 4.005 19 N -0.915 5.915 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.282 1.282 24 C 0.144 3.856 25 C -0.089 4.089 26 C -0.126 4.126 27 C -0.131 4.131 28 C -0.100 4.100 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.394 0.606 40 H 0.045 0.955 41 H 0.053 0.947 42 H 0.252 0.748 43 H 0.041 0.959 44 H 0.014 0.986 45 H 0.052 0.948 46 H 0.047 0.953 47 H 0.068 0.932 48 H 0.051 0.949 49 H 0.052 0.948 50 H 0.054 0.946 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.116 9.587 11.989 18.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 C -0.081 4.081 4 C -0.140 4.140 5 C -0.137 4.137 6 C -0.130 4.130 7 C -0.055 4.055 8 C -0.144 4.144 9 C 0.297 3.703 10 O -0.407 6.407 11 N -0.365 5.365 12 C 0.021 3.979 13 H 0.103 0.897 14 C 0.050 3.950 15 N -0.329 5.329 16 C -0.360 4.360 17 H 0.095 0.905 18 C -0.202 4.202 19 N -0.562 5.562 20 Si 0.738 3.262 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.018 3.982 25 C -0.091 4.091 26 C -0.183 4.183 27 C -0.189 4.189 28 C -0.118 4.118 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.229 0.771 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.032 0.968 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.073 0.927 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.541 8.839 12.445 18.001 hybrid contribution -0.057 -0.452 -1.077 1.170 sum -9.599 8.387 11.368 17.079 Atomic orbital electron populations 1.21738 0.94875 1.01556 1.02042 1.20548 0.95977 0.92838 1.03042 1.19820 0.99171 0.96026 0.93077 1.20946 1.00805 0.95010 0.97271 1.21016 0.99967 0.95025 0.97695 1.20913 1.00093 0.99934 0.92014 1.19257 0.98290 0.94365 0.93636 1.20700 0.95532 1.01988 0.96213 1.20323 0.89035 0.79837 0.81069 1.90731 1.57952 1.37798 1.54191 1.46046 1.14026 1.53048 1.23344 1.22460 0.81439 0.97297 0.96697 0.89682 1.21504 1.01449 0.90069 0.82007 1.44438 1.86092 1.00127 1.02232 1.19016 1.41929 0.88567 0.86457 0.90513 1.24823 1.01921 0.97005 0.96430 1.69987 1.54758 1.14220 1.17259 0.86168 0.77993 0.80586 0.81432 1.21636 1.21835 1.20706 1.21623 0.96314 0.86212 0.94080 1.22047 0.96424 0.93667 0.96930 1.21594 0.93562 1.02734 1.00432 1.21679 0.99964 0.96196 1.01016 1.20898 0.99217 0.93927 0.97746 0.92519 0.92757 0.92526 0.90791 0.91155 0.86523 0.86352 0.86484 0.88394 0.88135 0.77100 0.93644 0.92859 0.93708 0.94115 0.96799 0.92853 0.93440 0.91283 0.93043 0.92886 0.92665 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.89 37.15 0.37 -0.93 16 2 C -0.09 -0.93 6.06 -27.89 -0.17 -1.10 16 3 C -0.08 -1.03 5.13 -104.62 -0.54 -1.57 16 4 C -0.12 -1.45 9.70 -39.58 -0.38 -1.83 16 5 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 6 C -0.11 -1.42 9.70 -39.59 -0.38 -1.80 16 7 C -0.06 -0.76 4.37 -104.62 -0.46 -1.22 16 8 C -0.10 -1.31 5.83 -29.03 -0.17 -1.48 16 9 C 0.51 8.69 7.82 -10.99 -0.09 8.61 16 10 O -0.53 -11.43 15.76 5.56 0.09 -11.35 16 11 N -0.71 -11.62 4.55 -51.90 -0.24 -11.85 16 12 C 0.13 2.40 2.52 -65.96 -0.17 2.24 16 13 H 0.09 1.72 7.61 -51.93 -0.40 1.32 16 14 C 0.18 4.33 4.73 -3.07 -0.01 4.32 16 15 N -0.60 -15.04 3.38 -170.08 -0.58 -15.62 16 16 C -0.23 -6.41 10.27 -15.06 -0.15 -6.57 16 17 H 0.08 2.06 7.84 -52.49 -0.41 1.64 16 18 C 0.00 -0.14 5.48 -17.43 -0.10 -0.24 16 19 N -0.92 -27.50 10.36 55.49 0.57 -26.92 16 20 Si 0.91 22.28 29.56 -169.99 -5.02 17.26 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.14 2.84 6.15 -2.53 -0.02 2.82 16 25 C -0.09 -1.47 0.83 -152.22 -0.13 -1.60 16 26 C -0.13 -2.02 8.60 37.15 0.32 -1.70 16 27 C -0.13 -1.65 8.35 37.16 0.31 -1.34 16 28 C -0.10 -1.41 9.36 -39.58 -0.37 -1.78 16 29 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 34 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 37 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 38 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 39 H 0.39 5.40 6.82 -40.82 -0.28 5.12 16 40 H 0.05 1.30 7.51 -51.93 -0.39 0.91 16 41 H 0.05 1.50 7.29 -51.93 -0.38 1.13 16 42 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.04 0.79 8.05 -51.93 -0.42 0.38 16 44 H 0.01 0.27 8.04 -51.93 -0.42 -0.15 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.07 1.32 7.81 -51.93 -0.41 0.91 16 48 H 0.05 0.59 6.18 -51.93 -0.32 0.27 16 49 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 406.82 15.07 6.13 6.13 Total: -1.00 -33.57 406.82 -10.46 -44.03 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -8.88 Total: 5.27 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.53 Total: -6.95 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.24 Total: -54.40 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.57 -10.46 -44.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974743902.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.135 kcal (2) G-P(sol) polarization free energy of solvation -33.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds