Wall clock time and date at job start Tue Mar 31 2020 16:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50697 * 109.47161 * 2 1 4 4 C 1.38253 * 120.00283 * 89.99913 * 3 2 1 5 5 C 1.38220 * 120.00188 * 179.97438 * 4 3 2 6 6 C 1.38257 * 119.99778 * 0.02562 * 5 4 3 7 7 C 1.38208 * 120.00036 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00060 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46910 * 90.00113 * 8 7 6 10 10 O 1.21282 * 120.00098 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00299 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00258 * 180.02562 * 11 9 8 13 13 H 1.09005 * 110.77979 * 323.20973 * 12 11 9 14 14 C 1.54319 * 110.72094 * 86.45113 * 12 11 9 15 15 N 1.47023 * 107.40260 * 96.25062 * 14 12 11 16 16 C 1.36937 * 125.64986 * 178.90274 * 15 14 12 17 17 H 1.07997 * 120.00208 * 174.82861 * 16 15 14 18 18 C 1.38813 * 119.99793 * 354.82399 * 16 15 14 19 19 N 1.31616 * 120.00159 * 7.07449 * 18 16 15 20 20 Si 1.86806 * 119.99591 * 187.06666 * 18 16 15 21 21 H 1.48498 * 109.47072 * 94.99524 * 20 18 16 22 22 H 1.48511 * 109.46756 * 214.98714 * 20 18 16 23 23 H 1.48492 * 109.47457 * 334.99038 * 20 18 16 24 24 C 1.47424 * 108.70421 * 358.85973 * 15 14 12 25 25 C 1.54910 * 104.82982 * 24.13280 * 24 15 14 26 26 C 1.52993 * 111.00667 * 81.06212 * 25 24 15 27 27 C 1.53003 * 111.00497 * 204.88042 * 25 24 15 28 28 C 1.38221 * 119.99842 * 270.27527 * 3 2 1 29 29 H 1.09008 * 109.46885 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47338 * 299.99942 * 1 2 3 31 31 H 1.09004 * 109.47547 * 60.00688 * 1 2 3 32 32 H 1.09007 * 109.47496 * 239.99702 * 2 1 3 33 33 H 1.09000 * 109.47215 * 119.99988 * 2 1 3 34 34 H 1.08002 * 119.99847 * 0.02562 * 4 3 2 35 35 H 1.07997 * 120.00155 * 179.97438 * 5 4 3 36 36 H 1.08005 * 119.99643 * 179.97438 * 6 5 4 37 37 H 1.09002 * 109.47060 * 330.01069 * 8 7 6 38 38 H 1.08994 * 109.47672 * 210.00300 * 8 7 6 39 39 H 0.97005 * 119.99160 * 0.02562 * 11 9 8 40 40 H 1.09002 * 109.88635 * 336.75428 * 14 12 11 41 41 H 1.08996 * 109.88539 * 215.74315 * 14 12 11 42 42 H 0.96998 * 119.99800 * 179.97438 * 19 18 16 43 43 H 1.08996 * 110.36906 * 142.96528 * 24 15 14 44 44 H 1.09004 * 110.36971 * 265.29648 * 24 15 14 45 45 H 1.08999 * 109.47294 * 61.45492 * 26 25 24 46 46 H 1.08999 * 109.47508 * 181.45541 * 26 25 24 47 47 H 1.09007 * 109.47263 * 301.45516 * 26 25 24 48 48 H 1.08999 * 109.47278 * 58.54154 * 27 25 24 49 49 H 1.09001 * 109.46997 * 178.54683 * 27 25 24 50 50 H 1.09002 * 109.46483 * 298.54407 * 27 25 24 51 51 H 1.07994 * 120.00266 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0726 1.1973 5 6 2.7239 3.3755 1.1972 6 6 2.9544 4.0272 -0.0001 7 6 2.7230 3.3760 -1.1970 8 6 2.9736 4.0865 -2.5022 9 6 4.3965 3.8492 -2.9382 10 8 5.1343 3.1696 -2.2564 11 7 4.8493 4.3921 -4.0856 12 6 6.2324 4.1609 -4.5097 13 1 6.9026 4.1438 -3.6502 14 6 6.3444 2.8497 -5.3157 15 7 6.2825 3.2033 -6.7414 16 6 6.3694 2.3228 -7.7866 17 1 6.2292 2.6711 -8.7992 18 6 6.6377 0.9826 -7.5445 19 7 6.6706 0.5308 -6.3087 20 14 6.9519 -0.1798 -8.9727 21 1 8.4141 -0.2946 -9.2050 22 1 6.3949 -1.5188 -8.6528 23 1 6.2965 0.3498 -10.1954 24 6 6.1103 4.6627 -6.8595 25 6 6.6787 5.2373 -5.5380 26 6 8.2043 5.3378 -5.5950 27 6 6.0540 6.5967 -5.2174 28 6 2.2572 2.0743 -1.1970 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0831 1.5633 2.1326 35 1 2.9035 3.8848 2.1325 36 1 3.3144 5.0455 -0.0001 37 1 2.8073 5.1558 -2.3715 38 1 2.2922 3.7029 -3.2615 39 1 4.2593 4.9360 -4.6306 40 1 5.5172 2.1867 -5.0619 41 1 7.2928 2.3595 -5.0962 42 1 6.8578 -0.4058 -6.1396 43 1 6.6731 5.0434 -7.7117 44 1 5.0541 4.9133 -6.9588 45 1 8.4940 6.0147 -6.3986 46 1 8.5791 5.7197 -4.6454 47 1 8.6268 4.3504 -5.7816 48 1 4.9720 6.4902 -5.1399 49 1 6.4516 6.9653 -4.2718 50 1 6.2936 7.3030 -6.0123 51 1 2.0726 1.5668 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974743902.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:10 Heat of formation + Delta-G solvation = -21.332297 kcal Electronic energy + Delta-G solvation = -28814.095272 eV Core-core repulsion = 25098.431557 eV Total energy + Delta-G solvation = -3715.663715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.34761 -40.35642 -39.19893 -35.69108 -35.31731 -34.44929 -33.27739 -32.61817 -30.49003 -29.98410 -28.55835 -27.82032 -27.32342 -25.11566 -24.80003 -23.15823 -22.34185 -21.59865 -20.95060 -20.04019 -18.68180 -18.04196 -17.51998 -17.15114 -16.83265 -16.57002 -15.96849 -15.74978 -15.61523 -15.37269 -15.07574 -14.72374 -14.61814 -14.53210 -14.08830 -13.97000 -13.78143 -13.72214 -13.42202 -13.15962 -13.05837 -12.95648 -12.86532 -12.76642 -12.71203 -12.59444 -12.56614 -12.15173 -12.10468 -11.86200 -11.74169 -11.69412 -11.63038 -11.49068 -11.29856 -10.90355 -10.71181 -9.93685 -9.66490 -9.47318 -8.89086 -7.85248 -5.20807 0.44623 0.52773 1.42536 1.44910 1.53738 1.74393 2.29645 2.48352 2.93174 3.33021 3.51032 3.69052 3.73272 3.82820 3.97338 3.99326 4.07574 4.13193 4.23373 4.28359 4.39587 4.41248 4.48749 4.54531 4.58060 4.60939 4.69696 4.72531 4.78975 4.86286 4.89682 4.96509 5.01200 5.06501 5.06741 5.15066 5.17954 5.21074 5.22938 5.33754 5.36026 5.38084 5.46553 5.57827 5.58817 5.68538 5.72840 5.74985 5.78444 6.16640 6.17370 6.67383 7.07539 7.39231 7.77884 8.42533 9.24313 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010973 B = 0.003414 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.034752 B = 8200.501550 C =10170.640623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 C -0.093 4.093 4 C -0.129 4.129 5 C -0.122 4.122 6 C -0.122 4.122 7 C -0.073 4.073 8 C -0.093 4.093 9 C 0.508 3.492 10 O -0.583 6.583 11 N -0.702 5.702 12 C 0.140 3.860 13 H 0.072 0.928 14 C 0.194 3.806 15 N -0.620 5.620 16 C -0.237 4.237 17 H 0.087 0.913 18 C -0.068 4.068 19 N -0.953 5.953 20 Si 0.975 3.025 21 H -0.289 1.289 22 H -0.300 1.300 23 H -0.262 1.262 24 C 0.137 3.863 25 C -0.073 4.073 26 C -0.124 4.124 27 C -0.123 4.123 28 C -0.128 4.128 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.113 0.887 39 H 0.411 0.589 40 H -0.005 1.005 41 H 0.002 0.998 42 H 0.242 0.758 43 H 0.048 0.952 44 H 0.033 0.967 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.026 0.974 48 H 0.066 0.934 49 H 0.066 0.934 50 H 0.077 0.923 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.387 12.671 12.119 20.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 C -0.093 4.093 4 C -0.146 4.146 5 C -0.140 4.140 6 C -0.140 4.140 7 C -0.074 4.074 8 C -0.133 4.133 9 C 0.296 3.704 10 O -0.463 6.463 11 N -0.354 5.354 12 C 0.033 3.967 13 H 0.090 0.910 14 C 0.068 3.932 15 N -0.346 5.346 16 C -0.366 4.366 17 H 0.105 0.895 18 C -0.261 4.261 19 N -0.602 5.602 20 Si 0.803 3.197 21 H -0.216 1.216 22 H -0.227 1.227 23 H -0.187 1.187 24 C 0.013 3.987 25 C -0.075 4.075 26 C -0.182 4.182 27 C -0.181 4.181 28 C -0.146 4.146 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.131 0.869 39 H 0.249 0.751 40 H 0.013 0.987 41 H 0.020 0.980 42 H 0.052 0.948 43 H 0.066 0.934 44 H 0.051 0.949 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.045 0.955 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.096 0.904 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.850 11.997 12.532 20.462 hybrid contribution 0.348 -1.417 -1.107 1.832 sum -10.502 10.581 11.424 18.781 Atomic orbital electron populations 1.21695 0.93407 1.02416 1.02113 1.20588 0.97262 0.91827 1.02841 1.20108 0.99122 0.96912 0.93175 1.21279 1.00248 0.95361 0.97750 1.21416 0.98874 0.95068 0.98628 1.21227 0.99932 1.00949 0.91925 1.19476 0.98774 0.94448 0.94693 1.20721 0.92010 1.04528 0.96008 1.21181 0.90461 0.78366 0.80402 1.90710 1.59783 1.39955 1.55809 1.45882 1.13104 1.52959 1.23471 1.22022 0.83148 0.95491 0.95995 0.91020 1.21057 0.96751 0.92115 0.83316 1.44687 1.85782 1.02526 1.01643 1.19481 1.40287 0.89212 0.87653 0.89489 1.25685 1.02697 0.98959 0.98759 1.70263 1.56622 1.13728 1.19563 0.85107 0.77631 0.77923 0.79011 1.21569 1.22684 1.18657 1.21912 0.97565 0.83092 0.96159 1.22018 0.96836 0.95035 0.93593 1.21597 0.93175 1.00947 1.02467 1.21657 1.00615 0.93294 1.02533 1.21032 1.00900 0.94751 0.97949 0.91258 0.91857 0.93230 0.92315 0.89997 0.84213 0.83629 0.84594 0.84266 0.86860 0.75110 0.98660 0.98030 0.94827 0.93376 0.94937 0.90525 0.91392 0.95498 0.91486 0.91494 0.90434 0.87488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.89 71.98 0.71 -1.71 16 2 C -0.09 -1.91 6.06 29.84 0.18 -1.73 16 3 C -0.09 -2.40 5.13 -19.87 -0.10 -2.51 16 4 C -0.13 -2.89 9.70 22.27 0.22 -2.68 16 5 C -0.12 -2.65 10.05 22.27 0.22 -2.43 16 6 C -0.12 -2.93 9.70 22.27 0.22 -2.71 16 7 C -0.07 -2.00 4.37 -19.87 -0.09 -2.08 16 8 C -0.09 -2.21 5.83 29.10 0.17 -2.04 16 9 C 0.51 17.27 7.82 87.66 0.69 17.95 16 10 O -0.58 -26.15 15.76 -3.04 -0.05 -26.20 16 11 N -0.70 -22.33 4.55 -436.51 -1.99 -24.32 16 12 C 0.14 5.41 2.52 46.27 0.12 5.53 16 13 H 0.07 3.00 7.61 -2.38 -0.02 2.98 16 14 C 0.19 10.20 4.73 86.73 0.41 10.61 16 15 N -0.62 -31.74 3.38 -692.00 -2.34 -34.08 16 16 C -0.24 -13.41 10.27 84.03 0.86 -12.54 16 17 H 0.09 4.63 7.84 -2.91 -0.02 4.60 16 18 C -0.07 -4.01 5.48 84.86 0.46 -3.55 16 19 N -0.95 -60.90 10.36 21.65 0.22 -60.68 16 20 Si 0.97 47.14 29.56 68.60 2.03 49.17 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 23 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 24 C 0.14 5.20 6.15 86.86 0.53 5.73 16 25 C -0.07 -2.29 0.83 -50.70 -0.04 -2.33 16 26 C -0.12 -3.83 8.60 71.98 0.62 -3.21 16 27 C -0.12 -2.55 8.35 71.98 0.60 -1.95 16 28 C -0.13 -3.75 9.36 22.27 0.21 -3.54 16 29 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 1.42 8.09 -2.38 -0.02 1.40 16 33 H 0.08 1.55 8.09 -2.39 -0.02 1.53 16 34 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 36 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.14 2.12 8.09 -2.39 -0.02 2.10 16 38 H 0.11 2.40 8.08 -2.39 -0.02 2.38 16 39 H 0.41 10.21 6.82 -92.70 -0.63 9.58 16 40 H 0.00 -0.30 7.51 -2.39 -0.02 -0.31 16 41 H 0.00 0.09 7.29 -2.39 -0.02 0.08 16 42 H 0.24 15.26 8.31 -92.71 -0.77 14.49 16 43 H 0.05 1.77 8.05 -2.39 -0.02 1.75 16 44 H 0.03 1.14 8.04 -2.39 -0.02 1.13 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.03 1.03 7.81 -2.38 -0.02 1.02 16 48 H 0.07 1.19 6.18 -2.39 -0.01 1.18 16 49 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.11 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -80.05 406.82 4.13 -75.92 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.26 Total: 25.36 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 5.99 Total: -5.18 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -4.10 Total: -119.08 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.05 Total: -26.20 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -80.05 4.13 -75.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974743902.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.589 kcal (2) G-P(sol) polarization free energy of solvation -80.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds