Wall clock time and date at job start Tue Mar 31 2020 16:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47174 * 2 1 4 4 C 1.38252 * 119.99908 * 269.97473 * 3 2 1 5 5 C 1.38212 * 119.99874 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.00284 * 0.02562 * 5 4 3 7 7 C 1.38218 * 119.99721 * 0.04312 * 6 5 4 8 8 C 1.50706 * 119.99800 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46977 * 269.93177 * 8 7 6 10 10 O 1.21285 * 119.99654 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00030 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00008 * 179.97438 * 11 9 8 13 13 H 1.09004 * 110.64024 * 31.85796 * 12 11 9 14 14 C 1.54328 * 110.72144 * 268.52403 * 12 11 9 15 15 N 1.47020 * 107.26892 * 263.83043 * 14 12 11 16 16 C 1.36938 * 125.64778 * 181.10515 * 15 14 12 17 17 H 1.08002 * 120.00197 * 179.97438 * 16 15 14 18 18 C 1.38815 * 119.99951 * 359.94260 * 16 15 14 19 19 N 1.31616 * 120.00071 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00023 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47310 * 60.00299 * 20 18 16 22 22 H 1.48494 * 109.47165 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47215 * 299.99976 * 20 18 16 24 24 C 1.47422 * 108.70414 * 1.05950 * 15 14 12 25 25 C 1.54909 * 104.83435 * 335.86841 * 24 15 14 26 26 C 1.53003 * 111.00646 * 278.94255 * 25 24 15 27 27 C 1.52993 * 111.00516 * 155.08515 * 25 24 15 28 28 C 1.38215 * 119.99797 * 89.99744 * 3 2 1 29 29 H 1.09001 * 109.47008 * 59.99990 * 1 2 3 30 30 H 1.08997 * 109.47513 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47321 * 300.00573 * 1 2 3 32 32 H 1.08993 * 109.47576 * 239.99422 * 2 1 3 33 33 H 1.09001 * 109.46567 * 119.99376 * 2 1 3 34 34 H 1.08001 * 120.00328 * 0.02562 * 4 3 2 35 35 H 1.07999 * 119.99975 * 179.97438 * 5 4 3 36 36 H 1.07997 * 120.00467 * 179.97438 * 6 5 4 37 37 H 1.08994 * 109.46953 * 29.92994 * 8 7 6 38 38 H 1.08996 * 109.46834 * 149.93419 * 8 7 6 39 39 H 0.96993 * 119.99915 * 359.97438 * 11 9 8 40 40 H 1.08997 * 109.87981 * 23.24672 * 14 12 11 41 41 H 1.09001 * 109.88626 * 144.40852 * 14 12 11 42 42 H 0.97002 * 120.00169 * 180.02562 * 19 18 16 43 43 H 1.09006 * 110.36795 * 217.03449 * 24 15 14 44 44 H 1.08995 * 110.46478 * 94.75935 * 24 15 14 45 45 H 1.09000 * 109.46853 * 172.19333 * 26 25 24 46 46 H 1.09003 * 109.46795 * 292.19377 * 26 25 24 47 47 H 1.09004 * 109.47251 * 52.19197 * 26 25 24 48 48 H 1.09002 * 109.47071 * 307.80573 * 27 25 24 49 49 H 1.08999 * 109.47477 * 67.80996 * 27 25 24 50 50 H 1.09002 * 109.46898 * 187.80637 * 27 25 24 51 51 H 1.07995 * 120.00164 * 359.70322 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2632 2.0723 -1.1973 5 6 2.7235 3.3756 -1.1973 6 6 2.9534 4.0276 0.0000 7 6 2.7239 3.3757 1.1970 8 6 2.9751 4.0862 2.5021 9 6 4.3982 3.8488 2.9374 10 8 5.1359 3.1700 2.2548 11 7 4.8511 4.3909 4.0852 12 6 6.2344 4.1597 4.5087 13 1 6.8891 4.0573 3.6432 14 6 6.3265 2.9161 5.4180 15 7 6.2926 3.3895 6.8095 16 6 6.3732 2.5978 7.9239 17 1 6.3394 3.0440 8.9069 18 6 6.4976 1.2217 7.7903 19 7 6.5386 0.6779 6.5924 20 14 6.6067 0.1418 9.3105 21 1 5.3794 0.3131 10.1286 22 1 6.7339 -1.2796 8.8998 23 1 7.7943 0.5332 10.1115 24 6 6.1587 4.8576 6.8063 25 6 6.7236 5.3044 5.4348 26 6 8.2519 5.3694 5.4659 27 6 6.1283 6.6476 5.0078 28 6 2.2626 2.0723 1.1970 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8898 33 1 1.8932 -0.5138 0.8901 34 1 2.0832 1.5633 -2.1327 35 1 2.9042 3.8844 -2.1326 36 1 3.3134 5.0458 0.0000 37 1 2.8086 5.1554 2.3716 38 1 2.2940 3.7023 3.2616 39 1 4.2612 4.9340 4.6309 40 1 5.4796 2.2561 5.2302 41 1 7.2605 2.3870 5.2289 42 1 6.6252 -0.2837 6.4990 43 1 6.7425 5.2936 7.6171 44 1 5.1113 5.1449 6.8970 45 1 8.6284 5.5494 4.4590 46 1 8.5678 6.1802 6.1224 47 1 8.6482 4.4248 5.8386 48 1 5.0408 6.5961 5.0603 49 1 6.4875 7.4323 5.6736 50 1 6.4326 6.8712 3.9853 51 1 2.0780 1.5649 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974743907.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:14 Heat of formation + Delta-G solvation = -3.015392 kcal Electronic energy + Delta-G solvation = -28786.253805 eV Core-core repulsion = 25071.384370 eV Total energy + Delta-G solvation = -3714.869434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.02763 -39.19674 -37.76235 -34.42754 -33.82050 -32.96296 -32.29842 -30.68272 -29.54988 -28.50342 -27.34764 -26.46024 -25.60553 -23.97024 -23.41638 -22.07495 -20.92418 -20.11758 -19.69421 -18.62807 -16.81500 -16.61721 -16.44259 -15.77869 -15.74071 -14.96830 -14.76590 -14.34052 -14.02279 -13.90958 -13.76210 -13.67794 -13.49272 -13.25950 -13.10992 -12.84202 -12.52097 -12.20943 -12.05420 -11.96085 -11.79519 -11.74746 -11.64653 -11.34094 -11.28857 -11.05106 -10.96874 -10.84289 -10.75700 -10.75365 -10.37833 -10.23543 -9.99033 -9.86427 -9.61877 -9.46206 -8.70012 -8.61374 -8.52039 -8.37445 -6.80908 -5.67132 -3.02155 1.40419 1.48423 3.07850 3.41404 3.45694 3.47685 3.54497 3.96169 4.51558 4.67116 4.71019 4.86395 4.96755 5.08885 5.15153 5.22728 5.27423 5.28514 5.31361 5.34417 5.43419 5.49948 5.55177 5.59275 5.63935 5.66378 5.81867 5.83558 5.83783 5.93884 6.03875 6.04986 6.13971 6.17401 6.18282 6.22729 6.26816 6.41816 6.51005 6.60322 6.62857 6.63809 6.69661 6.69896 6.79492 6.99445 7.08250 7.57816 7.67657 7.85058 8.00525 8.27986 8.70483 9.24000 9.84785 10.50420 11.43258 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011092 B = 0.003369 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.760626 B = 8310.210858 C =10273.572818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.081 4.081 4 C -0.122 4.122 5 C -0.119 4.119 6 C -0.111 4.111 7 C -0.055 4.055 8 C -0.105 4.105 9 C 0.513 3.487 10 O -0.533 6.533 11 N -0.712 5.712 12 C 0.125 3.875 13 H 0.088 0.912 14 C 0.176 3.824 15 N -0.602 5.602 16 C -0.231 4.231 17 H 0.076 0.924 18 C -0.006 4.006 19 N -0.918 5.918 20 Si 0.910 3.090 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.144 3.856 25 C -0.090 4.090 26 C -0.126 4.126 27 C -0.129 4.129 28 C -0.100 4.100 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.395 0.605 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.253 0.747 43 H 0.040 0.960 44 H 0.015 0.985 45 H 0.047 0.953 46 H 0.052 0.948 47 H 0.069 0.931 48 H 0.051 0.949 49 H 0.053 0.947 50 H 0.051 0.949 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.807 8.936 -12.855 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 C -0.081 4.081 4 C -0.140 4.140 5 C -0.137 4.137 6 C -0.129 4.129 7 C -0.056 4.056 8 C -0.145 4.145 9 C 0.298 3.702 10 O -0.409 6.409 11 N -0.363 5.363 12 C 0.020 3.980 13 H 0.106 0.894 14 C 0.050 3.950 15 N -0.329 5.329 16 C -0.359 4.359 17 H 0.094 0.906 18 C -0.203 4.203 19 N -0.565 5.565 20 Si 0.741 3.259 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.017 3.983 25 C -0.092 4.092 26 C -0.184 4.184 27 C -0.187 4.187 28 C -0.118 4.118 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.229 0.771 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.032 0.968 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.088 0.912 48 H 0.070 0.930 49 H 0.072 0.928 50 H 0.071 0.929 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.239 8.183 -13.296 18.142 hybrid contribution -0.177 -0.389 1.151 1.228 sum -9.416 7.794 -12.145 17.231 Atomic orbital electron populations 1.21738 0.94869 1.01560 1.02055 1.20547 0.95990 0.92831 1.03024 1.19819 0.99176 0.96058 0.93080 1.20944 1.00794 0.95010 0.97271 1.21016 0.99972 0.95013 0.97703 1.20917 1.00065 0.99946 0.92011 1.19264 0.98324 0.94325 0.93645 1.20700 0.95517 1.02023 0.96210 1.20327 0.89038 0.79804 0.81041 1.90724 1.57999 1.38009 1.54196 1.45998 1.14015 1.53020 1.23229 1.22454 0.81397 0.96889 0.97294 0.89447 1.21508 1.01469 0.90283 0.81695 1.44428 1.86446 0.99681 1.02317 1.18975 1.43785 0.88042 0.85133 0.90575 1.24802 1.02170 0.96626 0.96672 1.69957 1.56255 1.10385 1.19945 0.86234 0.77847 0.79825 0.82031 1.21263 1.21640 1.21205 1.21623 0.96396 0.86549 0.93686 1.22014 0.96357 0.93697 0.97088 1.21600 0.93495 1.02615 1.00651 1.21662 1.00083 0.96257 1.00731 1.20894 0.99224 0.93932 0.97738 0.92751 0.92514 0.92523 0.91155 0.90810 0.86519 0.86346 0.86474 0.88366 0.88111 0.77088 0.93474 0.92980 0.93659 0.94195 0.96757 0.93388 0.92941 0.91224 0.93042 0.92760 0.92944 0.86196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.89 37.16 0.37 -0.92 16 2 C -0.09 -0.91 6.06 -27.88 -0.17 -1.08 16 3 C -0.08 -1.03 5.13 -104.62 -0.54 -1.56 16 4 C -0.12 -1.43 9.70 -39.59 -0.38 -1.81 16 5 C -0.12 -1.39 10.05 -39.58 -0.40 -1.78 16 6 C -0.11 -1.40 9.70 -39.58 -0.38 -1.79 16 7 C -0.06 -0.75 4.37 -104.62 -0.46 -1.21 16 8 C -0.10 -1.30 5.83 -29.03 -0.17 -1.47 16 9 C 0.51 8.63 7.82 -10.99 -0.09 8.55 16 10 O -0.53 -11.35 15.68 5.55 0.09 -11.26 16 11 N -0.71 -11.59 4.45 -52.03 -0.23 -11.83 16 12 C 0.12 2.38 2.59 -66.09 -0.17 2.21 16 13 H 0.09 1.77 7.45 -51.93 -0.39 1.39 16 14 C 0.18 4.33 4.79 -3.06 -0.01 4.32 16 15 N -0.60 -14.98 3.38 -170.07 -0.57 -15.55 16 16 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 17 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 18 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 19 N -0.92 -27.45 10.31 55.49 0.57 -26.88 16 20 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.14 2.82 6.12 -2.53 -0.02 2.81 16 25 C -0.09 -1.49 0.83 -152.36 -0.13 -1.61 16 26 C -0.13 -2.03 8.57 37.16 0.32 -1.71 16 27 C -0.13 -1.65 8.22 37.15 0.31 -1.35 16 28 C -0.10 -1.39 9.36 -39.58 -0.37 -1.76 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 38 H 0.10 1.12 8.09 -51.93 -0.42 0.70 16 39 H 0.39 5.47 7.11 -40.82 -0.29 5.18 16 40 H 0.05 1.33 7.41 -51.93 -0.38 0.95 16 41 H 0.05 1.46 7.38 -51.93 -0.38 1.08 16 42 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 44 H 0.01 0.28 7.98 -51.93 -0.41 -0.14 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.07 1.33 7.91 -51.93 -0.41 0.92 16 48 H 0.05 0.60 6.48 -51.93 -0.34 0.26 16 49 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 407.00 15.07 6.13 6.13 Total: -1.00 -33.29 407.00 -10.48 -43.77 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -8.90 Total: 5.38 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -2.54 Total: -6.97 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.23 Total: -54.26 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.29 -10.48 -43.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974743907.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.754 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds