Wall clock time and date at job start Tue Mar 31 2020 16:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47174 * 2 1 4 4 C 1.38252 * 119.99908 * 269.97473 * 3 2 1 5 5 C 1.38212 * 119.99874 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.00284 * 0.02562 * 5 4 3 7 7 C 1.38218 * 119.99721 * 0.04312 * 6 5 4 8 8 C 1.50706 * 119.99800 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46977 * 269.93177 * 8 7 6 10 10 O 1.21285 * 119.99654 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00030 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00008 * 179.97438 * 11 9 8 13 13 H 1.09004 * 110.64024 * 31.85796 * 12 11 9 14 14 C 1.54328 * 110.72144 * 268.52403 * 12 11 9 15 15 N 1.47020 * 107.26892 * 263.83043 * 14 12 11 16 16 C 1.36938 * 125.64778 * 181.10515 * 15 14 12 17 17 H 1.08002 * 120.00197 * 179.97438 * 16 15 14 18 18 C 1.38815 * 119.99951 * 359.94260 * 16 15 14 19 19 N 1.31616 * 120.00071 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00023 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47310 * 60.00299 * 20 18 16 22 22 H 1.48494 * 109.47165 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47215 * 299.99976 * 20 18 16 24 24 C 1.47422 * 108.70414 * 1.05950 * 15 14 12 25 25 C 1.54909 * 104.83435 * 335.86841 * 24 15 14 26 26 C 1.53003 * 111.00646 * 278.94255 * 25 24 15 27 27 C 1.52993 * 111.00516 * 155.08515 * 25 24 15 28 28 C 1.38215 * 119.99797 * 89.99744 * 3 2 1 29 29 H 1.09001 * 109.47008 * 59.99990 * 1 2 3 30 30 H 1.08997 * 109.47513 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47321 * 300.00573 * 1 2 3 32 32 H 1.08993 * 109.47576 * 239.99422 * 2 1 3 33 33 H 1.09001 * 109.46567 * 119.99376 * 2 1 3 34 34 H 1.08001 * 120.00328 * 0.02562 * 4 3 2 35 35 H 1.07999 * 119.99975 * 179.97438 * 5 4 3 36 36 H 1.07997 * 120.00467 * 179.97438 * 6 5 4 37 37 H 1.08994 * 109.46953 * 29.92994 * 8 7 6 38 38 H 1.08996 * 109.46834 * 149.93419 * 8 7 6 39 39 H 0.96993 * 119.99915 * 359.97438 * 11 9 8 40 40 H 1.08997 * 109.87981 * 23.24672 * 14 12 11 41 41 H 1.09001 * 109.88626 * 144.40852 * 14 12 11 42 42 H 0.97002 * 120.00169 * 180.02562 * 19 18 16 43 43 H 1.09006 * 110.36795 * 217.03449 * 24 15 14 44 44 H 1.08995 * 110.46478 * 94.75935 * 24 15 14 45 45 H 1.09000 * 109.46853 * 172.19333 * 26 25 24 46 46 H 1.09003 * 109.46795 * 292.19377 * 26 25 24 47 47 H 1.09004 * 109.47251 * 52.19197 * 26 25 24 48 48 H 1.09002 * 109.47071 * 307.80573 * 27 25 24 49 49 H 1.08999 * 109.47477 * 67.80996 * 27 25 24 50 50 H 1.09002 * 109.46898 * 187.80637 * 27 25 24 51 51 H 1.07995 * 120.00164 * 359.70322 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2632 2.0723 -1.1973 5 6 2.7235 3.3756 -1.1973 6 6 2.9534 4.0276 0.0000 7 6 2.7239 3.3757 1.1970 8 6 2.9751 4.0862 2.5021 9 6 4.3982 3.8488 2.9374 10 8 5.1359 3.1700 2.2548 11 7 4.8511 4.3909 4.0852 12 6 6.2344 4.1597 4.5087 13 1 6.8891 4.0573 3.6432 14 6 6.3265 2.9161 5.4180 15 7 6.2926 3.3895 6.8095 16 6 6.3732 2.5978 7.9239 17 1 6.3394 3.0440 8.9069 18 6 6.4976 1.2217 7.7903 19 7 6.5386 0.6779 6.5924 20 14 6.6067 0.1418 9.3105 21 1 5.3794 0.3131 10.1286 22 1 6.7339 -1.2796 8.8998 23 1 7.7943 0.5332 10.1115 24 6 6.1587 4.8576 6.8063 25 6 6.7236 5.3044 5.4348 26 6 8.2519 5.3694 5.4659 27 6 6.1283 6.6476 5.0078 28 6 2.2626 2.0723 1.1970 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8898 33 1 1.8932 -0.5138 0.8901 34 1 2.0832 1.5633 -2.1327 35 1 2.9042 3.8844 -2.1326 36 1 3.3134 5.0458 0.0000 37 1 2.8086 5.1554 2.3716 38 1 2.2940 3.7023 3.2616 39 1 4.2612 4.9340 4.6309 40 1 5.4796 2.2561 5.2302 41 1 7.2605 2.3870 5.2289 42 1 6.6252 -0.2837 6.4990 43 1 6.7425 5.2936 7.6171 44 1 5.1113 5.1449 6.8970 45 1 8.6284 5.5494 4.4590 46 1 8.5678 6.1802 6.1224 47 1 8.6482 4.4248 5.8386 48 1 5.0408 6.5961 5.0603 49 1 6.4875 7.4323 5.6736 50 1 6.4326 6.8712 3.9853 51 1 2.0780 1.5649 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974743907.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:13 Heat of formation + Delta-G solvation = -22.046134 kcal Electronic energy + Delta-G solvation = -28787.079039 eV Core-core repulsion = 25071.384370 eV Total energy + Delta-G solvation = -3715.694669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.34784 -40.35870 -39.20765 -35.67863 -35.31432 -34.45446 -33.27648 -32.60497 -30.48953 -29.97986 -28.54686 -27.82738 -27.32262 -25.10972 -24.79775 -23.14890 -22.31681 -21.62666 -20.94970 -20.04224 -18.68518 -18.04169 -17.52092 -17.14883 -16.81573 -16.55188 -15.95861 -15.74793 -15.62645 -15.37294 -15.06320 -14.72699 -14.61862 -14.52963 -14.08450 -13.94317 -13.79346 -13.75224 -13.44455 -13.15272 -13.03596 -12.93734 -12.85175 -12.75436 -12.64746 -12.59358 -12.57011 -12.17097 -12.14956 -11.85001 -11.74281 -11.69708 -11.62847 -11.51328 -11.29939 -10.91395 -10.71213 -9.92866 -9.66432 -9.47255 -8.88993 -7.83460 -5.20263 0.44696 0.52944 1.43168 1.46694 1.53181 1.73772 2.29693 2.49110 2.93300 3.34633 3.51733 3.69204 3.73650 3.83013 3.97953 3.99768 4.08394 4.12555 4.23577 4.28555 4.39736 4.41850 4.48889 4.54784 4.58251 4.61249 4.69925 4.72908 4.79131 4.85569 4.89970 4.96693 5.01378 5.06853 5.07503 5.14997 5.17878 5.21246 5.23061 5.34168 5.36222 5.37260 5.45854 5.57646 5.59011 5.68688 5.72670 5.75113 5.78597 6.16728 6.17594 6.67261 7.08214 7.38406 7.78394 8.42656 9.25420 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011092 B = 0.003369 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.760626 B = 8310.210858 C =10273.572818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 C -0.093 4.093 4 C -0.128 4.128 5 C -0.122 4.122 6 C -0.122 4.122 7 C -0.073 4.073 8 C -0.094 4.094 9 C 0.509 3.491 10 O -0.584 6.584 11 N -0.701 5.701 12 C 0.139 3.861 13 H 0.073 0.927 14 C 0.194 3.806 15 N -0.620 5.620 16 C -0.238 4.238 17 H 0.087 0.913 18 C -0.069 4.069 19 N -0.954 5.954 20 Si 0.977 3.023 21 H -0.274 1.274 22 H -0.300 1.300 23 H -0.275 1.275 24 C 0.138 3.862 25 C -0.075 4.075 26 C -0.124 4.124 27 C -0.122 4.122 28 C -0.128 4.128 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.113 0.887 39 H 0.410 0.590 40 H -0.001 1.001 41 H 0.000 1.000 42 H 0.243 0.757 43 H 0.047 0.953 44 H 0.034 0.966 45 H 0.063 0.937 46 H 0.078 0.922 47 H 0.027 0.973 48 H 0.067 0.933 49 H 0.076 0.924 50 H 0.063 0.937 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.058 11.962 -13.184 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 C -0.093 4.093 4 C -0.146 4.146 5 C -0.140 4.140 6 C -0.140 4.140 7 C -0.074 4.074 8 C -0.133 4.133 9 C 0.297 3.703 10 O -0.463 6.463 11 N -0.353 5.353 12 C 0.032 3.968 13 H 0.091 0.909 14 C 0.068 3.932 15 N -0.346 5.346 16 C -0.367 4.367 17 H 0.105 0.895 18 C -0.262 4.262 19 N -0.604 5.604 20 Si 0.805 3.195 21 H -0.200 1.200 22 H -0.227 1.227 23 H -0.201 1.201 24 C 0.013 3.987 25 C -0.076 4.076 26 C -0.182 4.182 27 C -0.180 4.180 28 C -0.146 4.146 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.131 0.869 39 H 0.248 0.752 40 H 0.017 0.983 41 H 0.019 0.981 42 H 0.052 0.948 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.082 0.918 46 H 0.097 0.903 47 H 0.047 0.953 48 H 0.086 0.914 49 H 0.095 0.905 50 H 0.082 0.918 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.524 11.283 -13.589 20.560 hybrid contribution 0.235 -1.333 1.240 1.836 sum -10.289 9.950 -12.349 18.904 Atomic orbital electron populations 1.21696 0.93454 1.02410 1.02099 1.20588 0.97225 0.91814 1.02873 1.20107 0.99103 0.96950 0.93161 1.21277 1.00228 0.95350 0.97762 1.21412 0.98899 0.95067 0.98619 1.21226 0.99920 1.00945 0.91930 1.19477 0.98838 0.94418 0.94660 1.20720 0.92026 1.04521 0.96026 1.21168 0.90447 0.78339 0.80348 1.90703 1.59781 1.40088 1.55754 1.45837 1.13077 1.52958 1.23398 1.22009 0.83135 0.95643 0.95987 0.90888 1.21066 0.96836 0.91956 0.83363 1.44670 1.86135 1.02162 1.01619 1.19452 1.42082 0.88668 0.86478 0.89512 1.25670 1.02882 0.98236 0.99387 1.70240 1.58173 1.09710 1.22237 0.85172 0.78376 0.77238 0.78694 1.20031 1.22667 1.20111 1.21904 0.97673 0.83335 0.95798 1.21984 0.96665 0.94884 0.94076 1.21599 0.93184 1.01352 1.02069 1.21634 1.00902 0.93614 1.01806 1.21032 1.00871 0.94736 0.97969 0.91890 0.91256 0.93244 0.89987 0.92246 0.84219 0.83654 0.84624 0.84320 0.86872 0.75214 0.98280 0.98137 0.94828 0.93501 0.94833 0.91782 0.90304 0.95349 0.91440 0.90502 0.91808 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.89 71.98 0.71 -1.68 16 2 C -0.09 -1.86 6.06 29.85 0.18 -1.68 16 3 C -0.09 -2.36 5.13 -19.87 -0.10 -2.47 16 4 C -0.13 -2.84 9.70 22.27 0.22 -2.63 16 5 C -0.12 -2.62 10.05 22.27 0.22 -2.40 16 6 C -0.12 -2.89 9.70 22.27 0.22 -2.67 16 7 C -0.07 -1.97 4.37 -19.86 -0.09 -2.06 16 8 C -0.09 -2.20 5.83 29.10 0.17 -2.03 16 9 C 0.51 17.12 7.82 87.66 0.69 17.81 16 10 O -0.58 -25.77 15.68 -3.05 -0.05 -25.82 16 11 N -0.70 -22.33 4.45 -436.91 -1.95 -24.28 16 12 C 0.14 5.37 2.59 46.18 0.12 5.49 16 13 H 0.07 3.07 7.45 -2.38 -0.02 3.05 16 14 C 0.19 10.15 4.79 86.73 0.42 10.57 16 15 N -0.62 -31.56 3.38 -691.99 -2.34 -33.90 16 16 C -0.24 -13.37 10.28 84.03 0.86 -12.51 16 17 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 18 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 19 N -0.95 -60.60 10.31 21.65 0.22 -60.38 16 20 Si 0.98 46.93 29.55 68.60 2.03 48.96 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 C 0.14 5.20 6.12 86.86 0.53 5.73 16 25 C -0.07 -2.33 0.83 -50.79 -0.04 -2.38 16 26 C -0.12 -3.86 8.57 71.98 0.62 -3.24 16 27 C -0.12 -2.58 8.22 71.98 0.59 -1.98 16 28 C -0.13 -3.69 9.36 22.27 0.21 -3.48 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 33 H 0.06 1.40 8.09 -2.39 -0.02 1.38 16 34 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 35 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 37 H 0.14 2.11 8.08 -2.39 -0.02 2.09 16 38 H 0.11 2.38 8.09 -2.39 -0.02 2.37 16 39 H 0.41 10.39 7.11 -92.71 -0.66 9.74 16 40 H 0.00 -0.06 7.41 -2.39 -0.02 -0.08 16 41 H 0.00 0.03 7.38 -2.39 -0.02 0.01 16 42 H 0.24 15.20 8.31 -92.71 -0.77 14.43 16 43 H 0.05 1.72 8.05 -2.38 -0.02 1.70 16 44 H 0.03 1.18 7.98 -2.39 -0.02 1.16 16 45 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.03 1.09 7.91 -2.38 -0.02 1.07 16 48 H 0.07 1.23 6.48 -2.39 -0.02 1.21 16 49 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.11 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -78.94 407.00 4.14 -74.80 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.23 Total: 25.79 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 5.99 Total: -5.19 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -4.06 Total: -118.55 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.05 Total: -25.82 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -78.94 4.14 -74.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974743907.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.753 kcal (2) G-P(sol) polarization free energy of solvation -78.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds