Wall clock time and date at job start Tue Mar 31 2020 16:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50699 * 109.47330 * 2 1 4 4 C 1.38229 * 120.00230 * 270.27821 * 3 2 1 5 5 C 1.38238 * 120.00124 * 180.28369 * 4 3 2 6 6 C 1.38234 * 119.99675 * 359.45911 * 5 4 3 7 7 C 1.50703 * 120.00257 * 180.27927 * 6 5 4 8 8 C 1.50706 * 109.46982 * 90.00130 * 7 6 5 9 9 O 1.21279 * 119.99882 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00014 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99738 * 180.02562 * 10 8 7 12 12 H 1.09001 * 110.88786 * 325.69983 * 11 10 8 13 13 C 1.54910 * 111.00675 * 89.58378 * 11 10 8 14 14 N 1.47523 * 104.78207 * 81.08256 * 13 11 10 15 15 C 1.36943 * 125.63779 * 204.08488 * 14 13 11 16 16 H 1.07992 * 119.99972 * 180.02562 * 15 14 13 17 17 C 1.38813 * 119.99629 * 0.04739 * 15 14 13 18 18 N 1.31612 * 120.00178 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99771 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46907 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47260 * 119.99917 * 19 17 15 22 22 H 1.48500 * 109.47066 * 239.99992 * 19 17 15 23 23 C 1.47019 * 108.71633 * 24.12295 * 14 13 11 24 24 C 1.54326 * 107.27253 * 358.94251 * 23 14 13 25 25 C 1.52994 * 110.71828 * 219.44301 * 24 23 14 26 26 C 1.53000 * 110.87458 * 96.23551 * 24 23 14 27 27 C 1.38234 * 120.00240 * 0.26327 * 6 5 4 28 28 C 1.38234 * 119.99755 * 90.00186 * 3 2 1 29 29 H 1.09000 * 109.47063 * 299.99607 * 1 2 3 30 30 H 1.09007 * 109.47367 * 59.99406 * 1 2 3 31 31 H 1.08998 * 109.47365 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46769 * 240.00134 * 2 1 3 33 33 H 1.08998 * 109.47623 * 120.00616 * 2 1 3 34 34 H 1.08004 * 120.00244 * 0.02562 * 4 3 2 35 35 H 1.08002 * 120.00519 * 179.74530 * 5 4 3 36 36 H 1.08988 * 109.47584 * 210.00457 * 7 6 5 37 37 H 1.09000 * 109.47013 * 330.00974 * 7 6 5 38 38 H 0.96998 * 119.99975 * 0.02562 * 10 8 7 39 39 H 1.08993 * 110.37176 * 199.90365 * 13 11 10 40 40 H 1.09008 * 110.36355 * 322.22743 * 13 11 10 41 41 H 0.97007 * 120.00113 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.88543 * 239.52024 * 23 14 13 43 43 H 1.09012 * 109.88091 * 118.35619 * 23 14 13 44 44 H 1.09003 * 109.47085 * 173.51980 * 25 24 23 45 45 H 1.08994 * 109.47368 * 293.51678 * 25 24 23 46 46 H 1.09005 * 109.47295 * 53.52108 * 25 24 23 47 47 H 1.09004 * 109.47286 * 306.39652 * 26 24 23 48 48 H 1.09005 * 109.46804 * 66.38865 * 26 24 23 49 49 H 1.08993 * 109.47349 * 186.38945 * 26 24 23 50 50 H 1.07997 * 120.00460 * 180.02562 * 27 6 5 51 51 H 1.08001 * 120.00274 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2572 2.0744 -1.1971 5 6 2.7237 3.3757 -1.1971 6 6 2.9545 4.0271 0.0001 7 6 3.4570 5.4479 0.0002 8 6 2.2849 6.3953 0.0008 9 8 1.1531 5.9596 0.0015 10 7 2.4945 7.7266 0.0005 11 6 1.3551 8.6474 0.0016 12 1 0.5234 8.2374 -0.5714 13 6 0.9180 8.9884 1.4481 14 7 1.8579 10.0371 1.8879 15 6 2.1799 10.3260 3.1872 16 1 2.8820 11.1167 3.4064 17 6 1.6041 9.6022 4.2223 18 7 0.7484 8.6386 3.9551 19 14 2.0439 9.9959 5.9947 20 1 3.0217 11.1131 6.0256 21 1 0.8174 10.3903 6.7332 22 1 2.6426 8.7968 6.6341 23 6 2.3908 10.7211 0.7007 24 6 1.7672 10.0428 -0.5374 25 6 2.8002 9.9069 -1.6578 26 6 0.5418 10.8185 -1.0247 27 6 2.7241 3.3755 1.1973 28 6 2.2627 2.0724 1.1972 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.0726 1.5670 -2.1324 35 1 2.9034 3.8850 -2.1323 36 1 4.0628 5.6190 0.8899 37 1 4.0621 5.6193 -0.8900 38 1 3.3997 8.0750 -0.0005 39 1 -0.1040 9.3671 1.4564 40 1 1.0031 8.1095 2.0872 41 1 0.3463 8.1325 4.6785 42 1 3.4757 10.6212 0.6711 43 1 2.1140 11.7752 0.7247 44 1 2.3747 9.3253 -2.4757 45 1 3.0749 10.8972 -2.0209 46 1 3.6868 9.4013 -1.2753 47 1 -0.1559 10.9524 -0.1979 48 1 0.8540 11.7938 -1.3982 49 1 0.0542 10.2620 -1.8250 50 1 2.9040 3.8845 2.1326 51 1 2.0831 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975082021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:17 Heat of formation + Delta-G solvation = -2.493134 kcal Electronic energy + Delta-G solvation = -28853.088994 eV Core-core repulsion = 25138.242206 eV Total energy + Delta-G solvation = -3714.846787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.93721 -39.15128 -37.73249 -34.56034 -33.78472 -32.94668 -31.20600 -30.79209 -30.68291 -28.31931 -27.27066 -26.38147 -25.58843 -23.65269 -22.93068 -22.62124 -20.89390 -20.24618 -19.64283 -18.61628 -16.79138 -16.54171 -16.26026 -15.75735 -15.62420 -14.98103 -14.67867 -14.29985 -13.95387 -13.83858 -13.74628 -13.63918 -13.42372 -13.22699 -13.14949 -12.96870 -12.65141 -12.25632 -11.96017 -11.87968 -11.81094 -11.71629 -11.65618 -11.28261 -11.20433 -11.15701 -10.97044 -10.81613 -10.77595 -10.75146 -10.37854 -10.17405 -9.92034 -9.77910 -9.67964 -9.35051 -8.75679 -8.67496 -8.37176 -8.27941 -6.79656 -5.61750 -3.05002 1.43763 1.56930 3.18935 3.39569 3.44908 3.47802 3.62978 4.03958 4.49309 4.70408 4.80508 4.91113 5.00377 5.07301 5.12483 5.25108 5.27421 5.29660 5.37796 5.41639 5.47328 5.53369 5.55613 5.64535 5.66067 5.71891 5.77429 5.82475 5.89286 5.91309 6.04459 6.08832 6.11744 6.17786 6.20995 6.21334 6.28228 6.43973 6.50062 6.53436 6.63603 6.70901 6.71694 6.76138 6.80198 7.04313 7.14350 7.52946 7.64287 7.90498 8.11118 8.40773 8.81591 9.23195 9.84901 10.49259 11.40601 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011144 B = 0.003398 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.867438 B = 8237.879819 C = 9921.249955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.089 4.089 4 C -0.120 4.120 5 C -0.104 4.104 6 C -0.061 4.061 7 C -0.104 4.104 8 C 0.515 3.485 9 O -0.536 6.536 10 N -0.704 5.704 11 C 0.126 3.874 12 H 0.084 0.916 13 C 0.146 3.854 14 N -0.601 5.601 15 C -0.224 4.224 16 H 0.076 0.924 17 C -0.009 4.009 18 N -0.916 5.916 19 Si 0.911 3.089 20 H -0.281 1.281 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.144 3.856 24 C -0.088 4.088 25 C -0.130 4.130 26 C -0.128 4.128 27 C -0.098 4.098 28 C -0.116 4.116 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.395 0.605 39 H 0.019 0.981 40 H 0.113 0.887 41 H 0.251 0.749 42 H 0.021 0.979 43 H 0.023 0.977 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.063 0.937 48 H 0.053 0.947 49 H 0.050 0.950 50 H 0.122 0.878 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.554 -10.630 -12.677 17.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.089 4.089 4 C -0.138 4.138 5 C -0.122 4.122 6 C -0.061 4.061 7 C -0.144 4.144 8 C 0.300 3.700 9 O -0.413 6.413 10 N -0.355 5.355 11 C 0.020 3.980 12 H 0.102 0.898 13 C 0.021 3.979 14 N -0.327 5.327 15 C -0.352 4.352 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.564 5.564 19 Si 0.742 3.258 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.018 3.982 24 C -0.089 4.089 25 C -0.188 4.188 26 C -0.186 4.186 27 C -0.116 4.116 28 C -0.134 4.134 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.230 0.770 39 H 0.036 0.964 40 H 0.130 0.870 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.040 0.960 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.140 0.860 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.675 -10.994 -12.453 17.257 hybrid contribution 0.576 0.620 1.058 1.355 sum 5.251 -10.374 -11.394 16.280 Atomic orbital electron populations 1.21754 0.94794 1.01369 1.02571 1.20508 0.96189 0.92843 1.02409 1.19831 0.99608 0.96181 0.93306 1.20881 1.00678 0.94968 0.97262 1.20907 0.99388 0.94681 0.97248 1.19274 0.99429 0.93928 0.93465 1.20687 0.97396 0.91484 1.04857 1.20274 0.90447 0.82731 0.76549 1.90706 1.24114 1.77191 1.49250 1.45791 1.09957 1.05297 1.74409 1.22472 0.88060 0.87098 1.00370 0.89773 1.22317 0.90928 0.95096 0.89584 1.44498 1.49838 1.37891 1.00499 1.19068 1.21019 1.14278 0.80875 0.90574 1.24788 0.99224 0.98575 0.97920 1.69827 1.32649 1.24051 1.29882 0.86059 0.77499 0.77344 0.84935 1.20606 1.21793 1.21836 1.21399 0.95521 0.95024 0.86306 1.21839 0.96129 0.95627 0.95278 1.21711 0.98261 1.01125 0.97666 1.21686 0.97065 0.98950 1.00904 1.21037 0.98333 0.94529 0.97717 1.20946 1.00165 0.94948 0.97384 0.92369 0.92520 0.92655 0.91359 0.91273 0.86507 0.86474 0.88062 0.88559 0.77049 0.96363 0.86966 0.93781 0.96103 0.95956 0.92893 0.92815 0.92907 0.91796 0.92757 0.93106 0.86005 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.89 37.15 0.37 -1.02 16 2 C -0.08 -0.78 6.06 -27.89 -0.17 -0.95 16 3 C -0.09 -1.09 5.13 -104.63 -0.54 -1.63 16 4 C -0.12 -1.47 9.70 -39.58 -0.38 -1.85 16 5 C -0.10 -1.37 9.70 -39.58 -0.38 -1.76 16 6 C -0.06 -0.87 4.37 -104.62 -0.46 -1.33 16 7 C -0.10 -1.41 5.83 -29.03 -0.17 -1.58 16 8 C 0.51 9.15 7.82 -10.98 -0.09 9.07 16 9 O -0.54 -11.78 15.73 5.56 0.09 -11.69 16 10 N -0.70 -12.12 4.62 -51.73 -0.24 -12.36 16 11 C 0.13 2.42 2.61 -65.78 -0.17 2.25 16 12 H 0.08 1.69 7.53 -51.93 -0.39 1.30 16 13 C 0.15 3.60 5.28 -2.47 -0.01 3.59 16 14 N -0.60 -14.94 3.40 -169.99 -0.58 -15.52 16 15 C -0.22 -6.15 10.27 -15.06 -0.15 -6.31 16 16 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 17 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 18 N -0.92 -27.11 10.09 55.49 0.56 -26.55 16 19 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C 0.14 2.86 6.41 -3.06 -0.02 2.84 16 24 C -0.09 -1.44 0.80 -152.67 -0.12 -1.57 16 25 C -0.13 -1.68 8.07 37.15 0.30 -1.38 16 26 C -0.13 -1.96 8.41 37.16 0.31 -1.65 16 27 C -0.10 -1.45 9.70 -39.58 -0.38 -1.83 16 28 C -0.12 -1.55 9.70 -39.58 -0.38 -1.93 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 34 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.10 1.27 8.08 -51.94 -0.42 0.86 16 37 H 0.10 0.99 8.09 -51.93 -0.42 0.57 16 38 H 0.40 5.99 7.03 -40.82 -0.29 5.70 16 39 H 0.02 0.49 7.81 -51.93 -0.41 0.09 16 40 H 0.11 3.22 5.88 -51.92 -0.31 2.92 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 42 H 0.02 0.41 7.76 -51.93 -0.40 0.00 16 43 H 0.02 0.45 7.85 -51.92 -0.41 0.05 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.05 0.65 6.42 -51.93 -0.33 0.31 16 47 H 0.06 1.11 7.59 -51.93 -0.39 0.72 16 48 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 51 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 405.55 15.07 6.11 6.11 Total: -1.00 -32.88 405.55 -10.44 -43.32 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -8.80 Total: 6.97 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -2.55 Total: -7.39 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.26 Total: -54.43 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.88 -10.44 -43.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975082021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.823 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds