Wall clock time and date at job start Tue Mar 31 2020 16:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50699 * 109.47330 * 2 1 4 4 C 1.38229 * 120.00230 * 270.27821 * 3 2 1 5 5 C 1.38238 * 120.00124 * 180.28369 * 4 3 2 6 6 C 1.38234 * 119.99675 * 359.45911 * 5 4 3 7 7 C 1.50703 * 120.00257 * 180.27927 * 6 5 4 8 8 C 1.50706 * 109.46982 * 90.00130 * 7 6 5 9 9 O 1.21279 * 119.99882 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00014 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99738 * 180.02562 * 10 8 7 12 12 H 1.09001 * 110.88786 * 325.69983 * 11 10 8 13 13 C 1.54910 * 111.00675 * 89.58378 * 11 10 8 14 14 N 1.47523 * 104.78207 * 81.08256 * 13 11 10 15 15 C 1.36943 * 125.63779 * 204.08488 * 14 13 11 16 16 H 1.07992 * 119.99972 * 180.02562 * 15 14 13 17 17 C 1.38813 * 119.99629 * 0.04739 * 15 14 13 18 18 N 1.31612 * 120.00178 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99771 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46907 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47260 * 119.99917 * 19 17 15 22 22 H 1.48500 * 109.47066 * 239.99992 * 19 17 15 23 23 C 1.47019 * 108.71633 * 24.12295 * 14 13 11 24 24 C 1.54326 * 107.27253 * 358.94251 * 23 14 13 25 25 C 1.52994 * 110.71828 * 219.44301 * 24 23 14 26 26 C 1.53000 * 110.87458 * 96.23551 * 24 23 14 27 27 C 1.38234 * 120.00240 * 0.26327 * 6 5 4 28 28 C 1.38234 * 119.99755 * 90.00186 * 3 2 1 29 29 H 1.09000 * 109.47063 * 299.99607 * 1 2 3 30 30 H 1.09007 * 109.47367 * 59.99406 * 1 2 3 31 31 H 1.08998 * 109.47365 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46769 * 240.00134 * 2 1 3 33 33 H 1.08998 * 109.47623 * 120.00616 * 2 1 3 34 34 H 1.08004 * 120.00244 * 0.02562 * 4 3 2 35 35 H 1.08002 * 120.00519 * 179.74530 * 5 4 3 36 36 H 1.08988 * 109.47584 * 210.00457 * 7 6 5 37 37 H 1.09000 * 109.47013 * 330.00974 * 7 6 5 38 38 H 0.96998 * 119.99975 * 0.02562 * 10 8 7 39 39 H 1.08993 * 110.37176 * 199.90365 * 13 11 10 40 40 H 1.09008 * 110.36355 * 322.22743 * 13 11 10 41 41 H 0.97007 * 120.00113 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.88543 * 239.52024 * 23 14 13 43 43 H 1.09012 * 109.88091 * 118.35619 * 23 14 13 44 44 H 1.09003 * 109.47085 * 173.51980 * 25 24 23 45 45 H 1.08994 * 109.47368 * 293.51678 * 25 24 23 46 46 H 1.09005 * 109.47295 * 53.52108 * 25 24 23 47 47 H 1.09004 * 109.47286 * 306.39652 * 26 24 23 48 48 H 1.09005 * 109.46804 * 66.38865 * 26 24 23 49 49 H 1.08993 * 109.47349 * 186.38945 * 26 24 23 50 50 H 1.07997 * 120.00460 * 180.02562 * 27 6 5 51 51 H 1.08001 * 120.00274 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2572 2.0744 -1.1971 5 6 2.7237 3.3757 -1.1971 6 6 2.9545 4.0271 0.0001 7 6 3.4570 5.4479 0.0002 8 6 2.2849 6.3953 0.0008 9 8 1.1531 5.9596 0.0015 10 7 2.4945 7.7266 0.0005 11 6 1.3551 8.6474 0.0016 12 1 0.5234 8.2374 -0.5714 13 6 0.9180 8.9884 1.4481 14 7 1.8579 10.0371 1.8879 15 6 2.1799 10.3260 3.1872 16 1 2.8820 11.1167 3.4064 17 6 1.6041 9.6022 4.2223 18 7 0.7484 8.6386 3.9551 19 14 2.0439 9.9959 5.9947 20 1 3.0217 11.1131 6.0256 21 1 0.8174 10.3903 6.7332 22 1 2.6426 8.7968 6.6341 23 6 2.3908 10.7211 0.7007 24 6 1.7672 10.0428 -0.5374 25 6 2.8002 9.9069 -1.6578 26 6 0.5418 10.8185 -1.0247 27 6 2.7241 3.3755 1.1973 28 6 2.2627 2.0724 1.1972 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.0726 1.5670 -2.1324 35 1 2.9034 3.8850 -2.1323 36 1 4.0628 5.6190 0.8899 37 1 4.0621 5.6193 -0.8900 38 1 3.3997 8.0750 -0.0005 39 1 -0.1040 9.3671 1.4564 40 1 1.0031 8.1095 2.0872 41 1 0.3463 8.1325 4.6785 42 1 3.4757 10.6212 0.6711 43 1 2.1140 11.7752 0.7247 44 1 2.3747 9.3253 -2.4757 45 1 3.0749 10.8972 -2.0209 46 1 3.6868 9.4013 -1.2753 47 1 -0.1559 10.9524 -0.1979 48 1 0.8540 11.7938 -1.3982 49 1 0.0542 10.2620 -1.8250 50 1 2.9040 3.8845 2.1326 51 1 2.0831 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000975082021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:16 Heat of formation + Delta-G solvation = -20.929179 kcal Electronic energy + Delta-G solvation = -28853.888441 eV Core-core repulsion = 25138.242206 eV Total energy + Delta-G solvation = -3715.646234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.29916 -40.34605 -39.19371 -35.67395 -35.47163 -34.44756 -32.60386 -32.20375 -31.78867 -29.89862 -28.38674 -27.72099 -27.29477 -25.13094 -24.06917 -23.62418 -22.39559 -21.56254 -21.07948 -20.04642 -18.70315 -18.00336 -17.56998 -16.90995 -16.80829 -16.47738 -16.02907 -15.72227 -15.57716 -15.27442 -15.04242 -14.66117 -14.56031 -14.45419 -14.24651 -14.08121 -13.88539 -13.73394 -13.63864 -13.05449 -13.01900 -12.98481 -12.80736 -12.76248 -12.64219 -12.59587 -12.54937 -12.06745 -12.04456 -11.78533 -11.75857 -11.69463 -11.63945 -11.42302 -11.34155 -10.88183 -10.73177 -9.88597 -9.77385 -9.38886 -8.84475 -7.75527 -5.20895 0.42008 0.54843 1.43768 1.44538 1.54975 1.78100 2.35127 2.48231 2.93363 3.34019 3.59091 3.69591 3.72731 3.90369 3.96786 3.98923 4.09251 4.13292 4.16947 4.22661 4.43477 4.47255 4.52190 4.55008 4.57878 4.61744 4.74774 4.77593 4.78643 4.84243 4.89687 4.93453 5.05117 5.05460 5.06606 5.11653 5.19541 5.21748 5.24276 5.33368 5.34731 5.38529 5.49204 5.53555 5.54832 5.72101 5.73849 5.74910 5.85278 6.16354 6.31269 6.71873 7.09170 7.42694 7.79332 8.43204 9.24763 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011144 B = 0.003398 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.867438 B = 8237.879819 C = 9921.249955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.093 4.093 4 C -0.125 4.125 5 C -0.111 4.111 6 C -0.080 4.080 7 C -0.094 4.094 8 C 0.510 3.490 9 O -0.584 6.584 10 N -0.696 5.696 11 C 0.139 3.861 12 H 0.075 0.925 13 C 0.154 3.846 14 N -0.617 5.617 15 C -0.230 4.230 16 H 0.085 0.915 17 C -0.069 4.069 18 N -0.949 5.949 19 Si 0.976 3.024 20 H -0.262 1.262 21 H -0.297 1.297 22 H -0.294 1.294 23 C 0.138 3.862 24 C -0.073 4.073 25 C -0.123 4.123 26 C -0.127 4.127 27 C -0.125 4.125 28 C -0.131 4.131 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.108 0.892 37 H 0.137 0.863 38 H 0.408 0.592 39 H -0.020 1.020 40 H 0.068 0.932 41 H 0.241 0.759 42 H 0.038 0.962 43 H 0.024 0.976 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.030 0.970 48 H 0.080 0.920 49 H 0.068 0.932 50 H 0.108 0.892 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.712 -10.662 -15.105 20.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.093 4.093 4 C -0.142 4.142 5 C -0.129 4.129 6 C -0.081 4.081 7 C -0.133 4.133 8 C 0.298 3.702 9 O -0.464 6.464 10 N -0.347 5.347 11 C 0.032 3.968 12 H 0.093 0.907 13 C 0.028 3.972 14 N -0.343 5.343 15 C -0.359 4.359 16 H 0.102 0.898 17 C -0.261 4.261 18 N -0.599 5.599 19 Si 0.805 3.195 20 H -0.186 1.186 21 H -0.225 1.225 22 H -0.222 1.222 23 C 0.013 3.987 24 C -0.075 4.075 25 C -0.181 4.181 26 C -0.185 4.185 27 C -0.143 4.143 28 C -0.149 4.149 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.161 0.839 35 H 0.155 0.845 36 H 0.126 0.874 37 H 0.155 0.845 38 H 0.245 0.755 39 H -0.003 1.003 40 H 0.086 0.914 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.042 0.958 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.081 0.919 47 H 0.050 0.950 48 H 0.098 0.902 49 H 0.087 0.913 50 H 0.126 0.874 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.893 -10.988 -14.909 19.762 hybrid contribution -0.144 0.639 1.813 1.927 sum 6.749 -10.349 -13.096 18.005 Atomic orbital electron populations 1.21750 0.94822 1.02380 1.01472 1.20565 0.96009 0.91240 1.03869 1.20201 0.98650 0.97540 0.92865 1.21266 0.99763 0.94856 0.98353 1.21215 0.98983 0.95230 0.97500 1.19453 1.00369 0.94431 0.93826 1.20695 0.95725 0.89817 1.07080 1.21087 0.91036 0.83132 0.74981 1.90682 1.26447 1.77944 1.51325 1.45705 1.09957 1.05098 1.73906 1.22093 0.88865 0.89296 0.96549 0.90731 1.21954 0.89516 0.93266 0.92459 1.44722 1.49788 1.38528 1.01298 1.19478 1.20336 1.13787 0.82306 0.89753 1.25617 0.99715 0.98881 1.01926 1.70141 1.34159 1.25341 1.30244 0.85038 0.77117 0.77345 0.80026 1.18613 1.22479 1.22170 1.21652 0.96370 0.94853 0.85805 1.21820 0.97592 0.92793 0.95256 1.21683 0.97157 1.02966 0.96246 1.21695 0.96028 1.00481 1.00259 1.21154 0.99884 0.95558 0.97708 1.21170 1.00351 0.94726 0.98619 0.93995 0.93100 0.90603 0.89391 0.90340 0.83908 0.84491 0.87368 0.84512 0.75503 1.00253 0.91411 0.94898 0.94430 0.95839 0.91557 0.90542 0.91917 0.95040 0.90157 0.91343 0.87366 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.89 71.98 0.71 -1.87 16 2 C -0.08 -1.36 6.06 29.85 0.18 -1.18 16 3 C -0.09 -2.18 5.13 -19.87 -0.10 -2.28 16 4 C -0.12 -2.84 9.70 22.27 0.22 -2.63 16 5 C -0.11 -2.78 9.70 22.27 0.22 -2.56 16 6 C -0.08 -2.30 4.37 -19.87 -0.09 -2.39 16 7 C -0.09 -2.43 5.83 29.10 0.17 -2.26 16 8 C 0.51 18.18 7.82 87.66 0.69 18.87 16 9 O -0.58 -26.57 15.73 -3.03 -0.05 -26.62 16 10 N -0.70 -23.54 4.62 -435.95 -2.01 -25.55 16 11 C 0.14 5.39 2.61 46.39 0.12 5.51 16 12 H 0.07 3.07 7.53 -2.39 -0.02 3.05 16 13 C 0.15 8.01 5.28 86.84 0.46 8.47 16 14 N -0.62 -31.27 3.40 -691.73 -2.35 -33.62 16 15 C -0.23 -12.80 10.27 84.03 0.86 -11.94 16 16 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 17 C -0.07 -3.99 5.49 84.86 0.47 -3.53 16 18 N -0.95 -59.24 10.09 21.65 0.22 -59.02 16 19 Si 0.98 46.61 29.55 68.60 2.03 48.63 16 20 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 22 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 23 C 0.14 5.31 6.41 86.73 0.56 5.86 16 24 C -0.07 -2.30 0.80 -50.99 -0.04 -2.34 16 25 C -0.12 -2.68 8.07 71.98 0.58 -2.10 16 26 C -0.13 -3.68 8.41 71.98 0.61 -3.07 16 27 C -0.12 -3.84 9.70 22.27 0.22 -3.62 16 28 C -0.13 -3.55 9.70 22.27 0.22 -3.33 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 1.18 8.09 -2.38 -0.02 1.16 16 33 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 34 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 35 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.11 2.65 8.08 -2.39 -0.02 2.64 16 37 H 0.14 2.39 8.09 -2.39 -0.02 2.37 16 38 H 0.41 11.56 7.03 -92.71 -0.65 10.91 16 39 H -0.02 -1.18 7.81 -2.39 -0.02 -1.20 16 40 H 0.07 4.16 5.88 -2.38 -0.01 4.15 16 41 H 0.24 14.85 8.31 -92.70 -0.77 14.08 16 42 H 0.04 1.34 7.76 -2.39 -0.02 1.33 16 43 H 0.02 0.91 7.85 -2.38 -0.02 0.89 16 44 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.06 1.26 6.42 -2.38 -0.02 1.24 16 47 H 0.03 1.10 7.59 -2.38 -0.02 1.08 16 48 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 49 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.11 3.45 8.06 -2.91 -0.02 3.43 16 51 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -76.67 405.55 4.12 -72.55 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: 0.25 Total: 30.01 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 6.03 Total: -6.39 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -4.15 Total: -118.19 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.05 Total: -26.62 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -76.67 4.12 -72.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975082021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.624 kcal (2) G-P(sol) polarization free energy of solvation -76.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds