Wall clock time and date at job start Tue Mar 31 2020 16:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50695 * 109.47123 * 2 1 4 4 C 1.38244 * 119.99811 * 90.00652 * 3 2 1 5 5 C 1.38228 * 120.00037 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.00163 * 359.95197 * 5 4 3 7 7 C 1.50698 * 120.00393 * 180.02562 * 6 5 4 8 8 C 1.50706 * 109.47294 * 89.99654 * 7 6 5 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 12 12 H 1.08998 * 110.64911 * 31.86167 * 11 10 8 13 13 C 1.54326 * 110.71938 * 268.51708 * 11 10 8 14 14 N 1.47019 * 107.27739 * 263.83295 * 13 11 10 15 15 C 1.36935 * 125.65193 * 181.01432 * 14 13 11 16 16 H 1.08005 * 120.00043 * 180.02562 * 15 14 13 17 17 C 1.38815 * 120.00029 * 0.05159 * 15 14 13 18 18 N 1.31623 * 119.99766 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99980 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47413 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46971 * 120.00336 * 19 17 15 22 22 H 1.48503 * 109.47249 * 240.00031 * 19 17 15 23 23 C 1.47428 * 108.69974 * 1.05813 * 14 13 11 24 24 C 1.54902 * 104.83456 * 335.87074 * 23 14 13 25 25 C 1.52997 * 111.00681 * 278.93441 * 24 23 14 26 26 C 1.53002 * 111.00746 * 155.07836 * 24 23 14 27 27 C 1.38237 * 119.99938 * 0.27676 * 6 5 4 28 28 C 1.38232 * 120.00475 * 269.97881 * 3 2 1 29 29 H 1.08996 * 109.46548 * 299.99937 * 1 2 3 30 30 H 1.09000 * 109.47037 * 59.99156 * 1 2 3 31 31 H 1.08997 * 109.46851 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46865 * 240.00623 * 2 1 3 33 33 H 1.08992 * 109.47191 * 120.00561 * 2 1 3 34 34 H 1.07996 * 119.99692 * 359.96894 * 4 3 2 35 35 H 1.07995 * 120.00359 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.46665 * 330.00035 * 7 6 5 37 37 H 1.09000 * 109.47722 * 210.00366 * 7 6 5 38 38 H 0.96994 * 119.99756 * 0.02562 * 10 8 7 39 39 H 1.09000 * 109.88086 * 23.25312 * 13 11 10 40 40 H 1.09008 * 109.88139 * 144.41694 * 13 11 10 41 41 H 0.96994 * 119.99604 * 180.02562 * 18 17 15 42 42 H 1.09001 * 110.36613 * 217.02847 * 23 14 13 43 43 H 1.09005 * 110.45681 * 94.75354 * 23 14 13 44 44 H 1.08996 * 109.47429 * 172.19303 * 25 24 23 45 45 H 1.08997 * 109.46954 * 292.19340 * 25 24 23 46 46 H 1.09001 * 109.47019 * 52.19798 * 25 24 23 47 47 H 1.08995 * 109.47054 * 307.80891 * 26 24 23 48 48 H 1.09003 * 109.46727 * 67.80274 * 26 24 23 49 49 H 1.08997 * 109.47539 * 187.80497 * 26 24 23 50 50 H 1.08000 * 119.99953 * 179.73050 * 27 6 5 51 51 H 1.08004 * 120.00066 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2629 2.0724 1.1973 5 6 2.7232 3.3758 1.1973 6 6 2.9539 4.0274 0.0002 7 6 3.4562 5.4482 0.0002 8 6 4.9633 5.4482 0.0007 9 8 5.5696 4.3979 0.0005 10 7 5.6371 6.6154 0.0013 11 6 7.1021 6.6154 0.0012 12 1 7.4864 5.7494 -0.5377 13 6 7.6482 6.6519 1.4441 14 7 7.9438 8.0561 1.7637 15 6 8.4653 8.5132 2.9445 16 1 8.6465 9.5691 3.0820 17 6 8.7615 7.6196 3.9645 18 7 8.5416 6.3328 3.7966 19 14 9.4723 8.2432 5.5755 20 1 9.6226 9.7193 5.5118 21 1 8.5585 7.8868 6.6905 22 1 10.8002 7.6194 5.8051 23 6 7.5848 8.8908 0.6027 24 6 7.6511 7.9311 -0.6114 25 6 9.0928 7.7527 -1.0914 26 6 6.7535 8.4226 -1.7488 27 6 2.7189 3.3775 -1.1970 28 6 2.2632 2.0723 -1.1971 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.0825 1.5633 2.1325 35 1 2.9029 3.8850 2.1326 36 1 3.0926 5.9620 0.8901 37 1 3.0931 5.9621 -0.8899 38 1 5.1521 7.4554 0.0018 39 1 6.8985 6.2646 2.1341 40 1 8.5591 6.0568 1.5109 41 1 8.7483 5.7084 4.5095 42 1 8.3015 9.7034 0.4835 43 1 6.5765 9.2889 0.7169 44 1 9.1289 6.9718 -1.8510 45 1 9.4528 8.6897 -1.5163 46 1 9.7238 7.4695 -0.2490 47 1 5.7500 8.6076 -1.3657 48 1 7.1612 9.3460 -2.1602 49 1 6.7099 7.6646 -2.5308 50 1 2.8950 3.8880 -2.1323 51 1 2.0832 1.5633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000975082022.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:19 Heat of formation + Delta-G solvation = -22.280661 kcal Electronic energy + Delta-G solvation = -28586.575395 eV Core-core repulsion = 24870.870556 eV Total energy + Delta-G solvation = -3715.704839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.34023 -40.35376 -39.21935 -35.69577 -35.47322 -34.44560 -32.60637 -32.21059 -31.79164 -29.89021 -28.35144 -27.75449 -27.30777 -25.18522 -24.06232 -23.62809 -22.34516 -21.61628 -21.12585 -20.09479 -18.68864 -18.03519 -17.52090 -16.88042 -16.82075 -16.50891 -16.01503 -15.75057 -15.62605 -15.36918 -15.03128 -14.72304 -14.59424 -14.53807 -14.21105 -13.99803 -13.79368 -13.70847 -13.44105 -13.15883 -13.02566 -13.00439 -12.87043 -12.76782 -12.67592 -12.57152 -12.51518 -12.07218 -12.04375 -11.85673 -11.74131 -11.68695 -11.64226 -11.50802 -11.29946 -10.90986 -10.72735 -9.92413 -9.77693 -9.39253 -8.89074 -7.83804 -5.20481 0.41631 0.54637 1.43131 1.44238 1.54676 1.74537 2.29754 2.48541 2.92595 3.34448 3.51872 3.71243 3.73865 3.89991 3.95504 3.98521 4.09055 4.13499 4.16565 4.22432 4.42003 4.47985 4.51616 4.55340 4.59556 4.62028 4.72959 4.75494 4.78887 4.85805 4.90209 4.96896 5.06392 5.07443 5.09244 5.14674 5.17993 5.19862 5.24366 5.34410 5.37400 5.39554 5.46290 5.53479 5.57811 5.71088 5.72920 5.74766 5.78817 6.15911 6.17452 6.67950 7.08073 7.39139 7.78056 8.42254 9.25280 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013297 B = 0.002924 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.242385 B = 9573.054074 C =11126.257710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 C -0.092 4.092 4 C -0.132 4.132 5 C -0.124 4.124 6 C -0.082 4.082 7 C -0.093 4.093 8 C 0.509 3.491 9 O -0.584 6.584 10 N -0.701 5.701 11 C 0.138 3.862 12 H 0.073 0.927 13 C 0.194 3.806 14 N -0.620 5.620 15 C -0.233 4.233 16 H 0.088 0.912 17 C -0.072 4.072 18 N -0.953 5.953 19 Si 0.977 3.023 20 H -0.260 1.260 21 H -0.296 1.296 22 H -0.296 1.296 23 C 0.138 3.862 24 C -0.075 4.075 25 C -0.124 4.124 26 C -0.122 4.122 27 C -0.112 4.112 28 C -0.126 4.126 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.128 0.872 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.138 0.862 38 H 0.411 0.589 39 H -0.001 1.001 40 H 0.001 0.999 41 H 0.242 0.758 42 H 0.047 0.953 43 H 0.034 0.966 44 H 0.063 0.937 45 H 0.078 0.922 46 H 0.027 0.973 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.063 0.937 50 H 0.137 0.863 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.362 -2.994 -14.735 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.150 4.150 5 C -0.142 4.142 6 C -0.083 4.083 7 C -0.132 4.132 8 C 0.297 3.703 9 O -0.464 6.464 10 N -0.353 5.353 11 C 0.032 3.968 12 H 0.091 0.909 13 C 0.068 3.932 14 N -0.347 5.347 15 C -0.362 4.362 16 H 0.105 0.895 17 C -0.265 4.265 18 N -0.603 5.603 19 Si 0.805 3.195 20 H -0.184 1.184 21 H -0.223 1.223 22 H -0.223 1.223 23 C 0.013 3.987 24 C -0.077 4.077 25 C -0.182 4.182 26 C -0.179 4.179 27 C -0.130 4.130 28 C -0.144 4.144 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.146 0.854 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.156 0.844 38 H 0.248 0.752 39 H 0.017 0.983 40 H 0.019 0.981 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.047 0.953 47 H 0.086 0.914 48 H 0.095 0.905 49 H 0.082 0.918 50 H 0.155 0.845 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.869 -3.772 -14.550 21.858 hybrid contribution 0.772 0.215 1.764 1.938 sum -15.098 -3.557 -12.785 20.101 Atomic orbital electron populations 1.21713 0.93716 1.02439 1.01996 1.20585 0.96938 0.91288 1.03342 1.20190 0.98820 0.97248 0.92957 1.21180 1.00581 0.94649 0.98551 1.21175 0.99443 0.95789 0.97807 1.19475 0.99372 0.95637 0.93798 1.20711 0.89409 0.95628 1.07447 1.21192 0.91095 0.83155 0.74892 1.90701 1.71541 1.32995 1.51134 1.45838 1.06320 1.08857 1.74258 1.22010 0.80323 0.98501 0.95973 0.90881 1.21069 0.95477 0.85568 0.91132 1.44702 1.74302 1.02814 1.12844 1.19512 1.33296 0.92952 0.90454 0.89464 1.25687 1.03001 0.95692 1.02079 1.70257 1.55186 1.01927 1.32931 0.85025 0.76962 0.78111 0.79354 1.18421 1.22316 1.22345 1.21901 0.97849 0.93291 0.85618 1.21990 0.96958 0.93177 0.95528 1.21595 0.94084 1.02526 0.99989 1.21634 0.98641 1.01722 0.95950 1.21225 0.98720 0.95396 0.97615 1.21259 1.00078 0.94740 0.98307 0.93094 0.92454 0.91049 0.90172 0.90996 0.85381 0.86890 0.86772 0.84375 0.75202 0.98253 0.98128 0.94889 0.93492 0.94808 0.91795 0.90302 0.95343 0.91429 0.90507 0.91814 0.84521 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.90 71.98 0.71 -1.21 16 2 C -0.08 -1.41 6.06 29.85 0.18 -1.23 16 3 C -0.09 -2.08 5.13 -19.87 -0.10 -2.19 16 4 C -0.13 -3.37 9.70 22.27 0.22 -3.16 16 5 C -0.12 -3.53 9.70 22.27 0.22 -3.32 16 6 C -0.08 -2.20 4.37 -19.87 -0.09 -2.28 16 7 C -0.09 -2.15 5.83 29.10 0.17 -1.98 16 8 C 0.51 17.02 7.82 87.66 0.69 17.71 16 9 O -0.58 -25.72 15.68 -3.02 -0.05 -25.76 16 10 N -0.70 -22.22 4.45 -436.90 -1.95 -24.17 16 11 C 0.14 5.34 2.59 46.19 0.12 5.46 16 12 H 0.07 3.07 7.45 -2.39 -0.02 3.05 16 13 C 0.19 10.12 4.79 86.73 0.42 10.53 16 14 N -0.62 -31.53 3.38 -691.97 -2.34 -33.87 16 15 C -0.23 -13.07 10.28 84.03 0.86 -12.21 16 16 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 17 C -0.07 -4.22 5.49 84.86 0.47 -3.76 16 18 N -0.95 -60.50 10.31 21.65 0.22 -60.28 16 19 Si 0.98 47.04 29.55 68.60 2.03 49.07 16 20 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 22 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 23 C 0.14 5.20 6.12 86.85 0.53 5.73 16 24 C -0.07 -2.34 0.83 -50.79 -0.04 -2.38 16 25 C -0.12 -3.84 8.57 71.98 0.62 -3.23 16 26 C -0.12 -2.56 8.22 71.98 0.59 -1.97 16 27 C -0.11 -2.65 9.70 22.27 0.22 -2.43 16 28 C -0.13 -2.77 9.70 22.27 0.22 -2.56 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 1.17 8.09 -2.38 -0.02 1.15 16 33 H 0.07 1.17 8.08 -2.39 -0.02 1.16 16 34 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 35 H 0.11 3.23 8.06 -2.91 -0.02 3.21 16 36 H 0.11 2.36 8.09 -2.39 -0.02 2.34 16 37 H 0.14 2.08 8.08 -2.39 -0.02 2.06 16 38 H 0.41 10.32 7.11 -92.71 -0.66 9.66 16 39 H 0.00 -0.04 7.41 -2.39 -0.02 -0.06 16 40 H 0.00 0.03 7.38 -2.38 -0.02 0.02 16 41 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 42 H 0.05 1.72 8.05 -2.39 -0.02 1.70 16 43 H 0.03 1.18 7.98 -2.38 -0.02 1.16 16 44 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.03 1.09 7.91 -2.39 -0.02 1.07 16 47 H 0.07 1.22 6.48 -2.39 -0.02 1.21 16 48 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 51 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -78.88 407.00 4.14 -74.74 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.24 Total: 24.74 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 5.99 Total: -4.46 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -4.06 Total: -118.32 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.05 Total: -25.76 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -78.88 4.14 -74.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975082022.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.463 kcal (2) G-P(sol) polarization free energy of solvation -78.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds