Wall clock time and date at job start Tue Mar 31 2020 16:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46929 * 2 1 4 4 C 1.50699 * 109.46831 * 119.99780 * 2 1 3 5 5 O 1.21284 * 119.99500 * 115.55480 * 4 2 1 6 6 N 1.34774 * 120.00173 * 295.55152 * 4 2 1 7 7 C 1.46504 * 119.99890 * 180.02562 * 6 4 2 8 8 H 1.08998 * 110.91536 * 328.90874 * 7 6 4 9 9 C 1.54910 * 111.00092 * 92.80520 * 7 6 4 10 10 N 1.47424 * 104.83233 * 81.06620 * 9 7 6 11 11 C 1.36932 * 125.65136 * 204.08915 * 10 9 7 12 12 H 1.07998 * 120.00553 * 180.02562 * 11 10 9 13 13 C 1.38819 * 119.99775 * 0.04224 * 11 10 9 14 14 N 1.31611 * 119.99762 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 119.99772 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47085 * 90.00353 * 15 13 11 17 17 H 1.48506 * 109.47180 * 209.99768 * 15 13 11 18 18 H 1.48501 * 109.47749 * 330.00337 * 15 13 11 19 19 C 1.47023 * 108.70234 * 24.12613 * 10 9 7 20 20 C 1.54322 * 107.27300 * 358.94197 * 19 10 9 21 21 C 1.52998 * 110.72183 * 96.16975 * 20 19 10 22 22 C 1.53002 * 110.72117 * 219.44428 * 20 19 10 23 23 C 1.50696 * 109.47066 * 239.99930 * 2 1 3 24 24 C 1.38230 * 119.99930 * 125.65877 * 23 2 1 25 25 C 1.38237 * 120.00229 * 179.76847 * 24 23 2 26 26 C 1.38243 * 119.99552 * 0.50326 * 25 24 23 27 27 C 1.38233 * 119.99873 * 359.75009 * 26 25 24 28 28 C 1.38231 * 120.00014 * 305.93458 * 23 2 1 29 29 H 1.09003 * 109.47189 * 300.00034 * 1 2 3 30 30 H 1.09002 * 109.47545 * 59.99915 * 1 2 3 31 31 H 1.09001 * 109.47246 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46808 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47116 * 299.99858 * 3 2 1 34 34 H 1.09003 * 109.47213 * 59.99980 * 3 2 1 35 35 H 0.96998 * 120.00172 * 0.02562 * 6 4 2 36 36 H 1.08992 * 110.36920 * 322.22707 * 9 7 6 37 37 H 1.09007 * 110.36395 * 199.90000 * 9 7 6 38 38 H 0.97005 * 120.00070 * 180.02562 * 14 13 11 39 39 H 1.08998 * 109.88244 * 239.52376 * 19 10 9 40 40 H 1.09004 * 110.01332 * 118.43254 * 19 10 9 41 41 H 1.09001 * 109.47257 * 61.45315 * 21 20 19 42 42 H 1.09001 * 109.47271 * 181.45592 * 21 20 19 43 43 H 1.09005 * 109.47174 * 301.45273 * 21 20 19 44 44 H 1.08995 * 109.47186 * 58.54752 * 22 20 19 45 45 H 1.09002 * 109.47170 * 178.54306 * 22 20 19 46 46 H 1.08995 * 109.47190 * 298.54414 * 22 20 19 47 47 H 1.07998 * 120.00319 * 359.97438 * 24 23 2 48 48 H 1.07995 * 120.00295 * 180.23619 * 25 24 23 49 49 H 1.08003 * 119.99641 * 179.72623 * 26 25 24 50 50 H 1.08002 * 119.99639 * 179.97438 * 27 26 25 51 51 H 1.08003 * 120.00553 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.6616 -1.7414 1.1210 6 7 1.7823 -0.2000 2.4525 7 6 2.2710 -0.8903 3.6487 8 1 2.3085 -1.9678 3.4882 9 6 3.6558 -0.3445 4.0778 10 7 3.3594 0.8914 4.8248 11 6 4.2176 1.9442 4.9986 12 1 3.9043 2.8084 5.5656 13 6 5.4902 1.9009 4.4458 14 7 5.8716 0.8481 3.7541 15 14 6.6606 3.3373 4.6823 16 1 7.4595 3.1269 5.9162 17 1 7.5713 3.4315 3.5130 18 1 5.8816 4.5956 4.8056 19 6 1.9900 0.8060 5.3531 20 6 1.4019 -0.5421 4.8860 21 6 1.5577 -1.6067 5.9738 22 6 -0.0669 -0.3833 4.4883 23 6 2.0323 -0.7104 -1.2304 24 6 2.9207 -0.0776 -2.0796 25 6 3.3852 -0.7310 -3.2058 26 6 2.9532 -2.0134 -3.4882 27 6 2.0608 -2.6443 -2.6418 28 6 1.6004 -1.9927 -1.5129 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.2787 0.6244 2.5401 36 1 4.2639 -0.1213 3.2012 37 1 4.1644 -1.0633 4.7204 38 1 6.7610 0.8176 3.3681 39 1 1.3899 1.6276 4.9620 40 1 2.0072 0.8455 6.4423 41 1 1.0109 -1.2983 6.8649 42 1 1.1598 -2.5553 5.6134 43 1 2.6134 -1.7249 6.2180 44 1 -0.1497 0.3558 3.6915 45 1 -0.4540 -1.3401 4.1378 46 1 -0.6435 -0.0525 5.3521 47 1 3.2544 0.9261 -1.8616 48 1 4.0822 -0.2380 -3.8672 49 1 3.3127 -2.5223 -4.3704 50 1 1.7231 -3.6461 -2.8627 51 1 0.9032 -2.4858 -0.8516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977562863.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:24 Heat of formation + Delta-G solvation = 9.374902 kcal Electronic energy + Delta-G solvation = -30142.678075 eV Core-core repulsion = 26428.345924 eV Total energy + Delta-G solvation = -3714.332151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.43339 -39.02124 -37.69993 -35.04001 -33.78633 -32.89501 -30.90841 -30.69209 -29.61180 -28.02743 -27.36444 -26.76336 -25.60282 -24.07043 -23.24788 -22.14229 -21.56610 -20.12206 -19.22866 -18.50807 -17.08048 -16.72829 -16.41754 -15.79745 -15.01679 -14.82952 -14.51259 -14.34009 -14.02644 -13.92374 -13.68671 -13.65891 -13.35028 -13.19128 -12.85072 -12.58798 -12.30782 -12.18507 -12.07862 -11.99725 -11.90008 -11.74779 -11.61292 -11.43327 -11.27918 -11.15298 -10.98154 -10.79433 -10.71327 -10.57455 -10.37463 -10.17641 -9.93699 -9.78669 -9.66976 -9.21020 -8.72941 -8.67193 -8.54461 -8.27367 -6.79955 -5.61888 -3.05096 1.49611 1.58747 3.16313 3.39626 3.44550 3.47013 3.63513 4.05218 4.49228 4.57763 4.84222 4.98518 5.03208 5.11448 5.17164 5.24012 5.25242 5.27805 5.31274 5.53236 5.55751 5.56804 5.63960 5.69401 5.77087 5.83149 5.86371 5.87878 5.89305 6.04275 6.06247 6.11470 6.15021 6.18575 6.22102 6.28048 6.30443 6.44309 6.49892 6.62144 6.63276 6.64789 6.71414 6.79081 6.80208 7.03906 7.15128 7.52401 7.63686 7.90159 8.10401 8.40611 8.79415 9.23138 9.84815 10.49201 11.40432 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010985 B = 0.004449 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.418830 B = 6291.524444 C = 7857.135978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.044 4.044 3 C -0.143 4.143 4 C 0.524 3.476 5 O -0.536 6.536 6 N -0.698 5.698 7 C 0.124 3.876 8 H 0.086 0.914 9 C 0.147 3.853 10 N -0.600 5.600 11 C -0.225 4.225 12 H 0.076 0.924 13 C -0.008 4.008 14 N -0.916 5.916 15 Si 0.910 3.090 16 H -0.290 1.290 17 H -0.291 1.291 18 H -0.282 1.282 19 C 0.144 3.856 20 C -0.088 4.088 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.052 4.052 24 C -0.114 4.114 25 C -0.124 4.124 26 C -0.125 4.125 27 C -0.125 4.125 28 C -0.088 4.088 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.395 0.605 36 H 0.113 0.887 37 H 0.018 0.982 38 H 0.252 0.748 39 H 0.020 0.980 40 H 0.022 0.978 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.126 0.874 48 H 0.118 0.882 49 H 0.116 0.884 50 H 0.118 0.882 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.359 -3.094 -9.469 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.047 4.047 3 C -0.200 4.200 4 C 0.309 3.691 5 O -0.413 6.413 6 N -0.348 5.348 7 C 0.018 3.982 8 H 0.104 0.896 9 C 0.021 3.979 10 N -0.326 5.326 11 C -0.353 4.353 12 H 0.094 0.906 13 C -0.204 4.204 14 N -0.564 5.564 15 Si 0.741 3.259 16 H -0.217 1.217 17 H -0.217 1.217 18 H -0.208 1.208 19 C 0.017 3.983 20 C -0.089 4.089 21 C -0.186 4.186 22 C -0.187 4.187 23 C -0.052 4.052 24 C -0.132 4.132 25 C -0.142 4.142 26 C -0.143 4.143 27 C -0.143 4.143 28 C -0.106 4.106 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.230 0.770 36 H 0.130 0.870 37 H 0.036 0.964 38 H 0.063 0.937 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.144 0.856 48 H 0.137 0.863 49 H 0.134 0.866 50 H 0.136 0.864 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.680 -3.766 -9.584 16.335 hybrid contribution 0.600 1.123 0.363 1.324 sum -12.080 -2.643 -9.221 15.425 Atomic orbital electron populations 1.21857 0.92072 1.02627 1.02686 1.19721 0.96914 0.96344 0.91708 1.21944 1.02595 0.92922 1.02562 1.20106 0.79762 0.85090 0.84126 1.90694 1.39813 1.24343 1.86432 1.45747 1.56365 1.27483 1.05223 1.22493 0.96757 0.96397 0.82515 0.89567 1.22300 0.90854 0.86552 0.98186 1.44452 1.09889 1.17442 1.60843 1.19017 0.93244 0.94937 1.28141 0.90635 1.24772 0.97416 0.97769 1.00405 1.69809 1.19047 1.28220 1.39343 0.86144 0.80979 0.81598 0.77170 1.21686 1.21733 1.20776 1.21392 0.87628 0.92887 0.96343 1.21843 0.94501 0.97018 0.95542 1.21683 1.02534 0.97124 0.97228 1.21703 0.95166 1.01151 1.00696 1.19307 0.97131 0.94489 0.94317 1.21175 0.96879 1.00497 0.94603 1.21070 1.00179 0.95298 0.97669 1.21081 0.98216 0.95368 0.99673 1.21053 0.98375 0.99610 0.95226 1.20880 0.99543 0.93976 0.96178 0.91768 0.91442 0.92000 0.91154 0.91523 0.91536 0.76985 0.86982 0.96376 0.93721 0.96185 0.95969 0.92740 0.93157 0.91808 0.92962 0.92910 0.92829 0.85630 0.86348 0.86556 0.86445 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 8.16 37.16 0.30 -1.16 16 2 C -0.04 -0.61 0.72 -156.81 -0.11 -0.72 16 3 C -0.14 -1.91 7.01 37.16 0.26 -1.65 16 4 C 0.52 9.36 6.40 -10.99 -0.07 9.29 16 5 O -0.54 -11.65 14.97 5.55 0.08 -11.56 16 6 N -0.70 -12.05 4.33 -51.73 -0.22 -12.27 16 7 C 0.12 2.38 2.67 -65.78 -0.18 2.20 16 8 H 0.09 1.72 7.44 -51.93 -0.39 1.34 16 9 C 0.15 3.59 5.26 -2.53 -0.01 3.57 16 10 N -0.60 -14.80 3.39 -170.07 -0.58 -15.38 16 11 C -0.23 -6.14 10.27 -15.06 -0.15 -6.29 16 12 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 13 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 14 N -0.92 -27.00 10.09 55.49 0.56 -26.44 16 15 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C 0.14 2.84 6.41 -3.06 -0.02 2.82 16 20 C -0.09 -1.44 0.80 -152.67 -0.12 -1.57 16 21 C -0.13 -1.95 8.44 37.16 0.31 -1.63 16 22 C -0.13 -1.68 8.16 37.16 0.30 -1.38 16 23 C -0.05 -0.76 4.33 -104.63 -0.45 -1.22 16 24 C -0.11 -1.59 8.99 -39.58 -0.36 -1.95 16 25 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 26 C -0.13 -1.53 10.05 -39.58 -0.40 -1.92 16 27 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 28 C -0.09 -1.25 8.15 -39.58 -0.32 -1.57 16 29 H 0.06 0.62 7.88 -51.93 -0.41 0.21 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.66 7.08 -51.93 -0.37 0.29 16 32 H 0.07 1.10 7.25 -51.93 -0.38 0.72 16 33 H 0.07 0.72 7.78 -51.93 -0.40 0.32 16 34 H 0.07 0.87 7.33 -51.93 -0.38 0.49 16 35 H 0.40 6.17 6.02 -40.82 -0.25 5.93 16 36 H 0.11 3.20 5.87 -51.93 -0.30 2.90 16 37 H 0.02 0.49 7.71 -51.93 -0.40 0.09 16 38 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.02 0.39 7.82 -51.93 -0.41 -0.02 16 40 H 0.02 0.45 7.84 -51.93 -0.41 0.04 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 1.10 7.44 -51.93 -0.39 0.72 16 44 H 0.05 0.65 6.34 -51.93 -0.33 0.32 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.13 1.63 5.91 -52.49 -0.31 1.31 16 48 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 49 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 50 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 51 H 0.12 1.60 7.23 -52.48 -0.38 1.22 16 LS Contribution 393.02 15.07 5.92 5.92 Total: -1.00 -32.24 393.02 -9.59 -41.83 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -8.42 Total: 8.31 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -1.91 Total: -7.45 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -0.24 Total: -54.09 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.24 -9.59 -41.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977562863.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.202 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds