Wall clock time and date at job start Tue Mar 31 2020 16:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46929 * 2 1 4 4 C 1.50699 * 109.46831 * 119.99780 * 2 1 3 5 5 O 1.21284 * 119.99500 * 115.55480 * 4 2 1 6 6 N 1.34774 * 120.00173 * 295.55152 * 4 2 1 7 7 C 1.46504 * 119.99890 * 180.02562 * 6 4 2 8 8 H 1.08998 * 110.91536 * 328.90874 * 7 6 4 9 9 C 1.54910 * 111.00092 * 92.80520 * 7 6 4 10 10 N 1.47424 * 104.83233 * 81.06620 * 9 7 6 11 11 C 1.36932 * 125.65136 * 204.08915 * 10 9 7 12 12 H 1.07998 * 120.00553 * 180.02562 * 11 10 9 13 13 C 1.38819 * 119.99775 * 0.04224 * 11 10 9 14 14 N 1.31611 * 119.99762 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 119.99772 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47085 * 90.00353 * 15 13 11 17 17 H 1.48506 * 109.47180 * 209.99768 * 15 13 11 18 18 H 1.48501 * 109.47749 * 330.00337 * 15 13 11 19 19 C 1.47023 * 108.70234 * 24.12613 * 10 9 7 20 20 C 1.54322 * 107.27300 * 358.94197 * 19 10 9 21 21 C 1.52998 * 110.72183 * 96.16975 * 20 19 10 22 22 C 1.53002 * 110.72117 * 219.44428 * 20 19 10 23 23 C 1.50696 * 109.47066 * 239.99930 * 2 1 3 24 24 C 1.38230 * 119.99930 * 125.65877 * 23 2 1 25 25 C 1.38237 * 120.00229 * 179.76847 * 24 23 2 26 26 C 1.38243 * 119.99552 * 0.50326 * 25 24 23 27 27 C 1.38233 * 119.99873 * 359.75009 * 26 25 24 28 28 C 1.38231 * 120.00014 * 305.93458 * 23 2 1 29 29 H 1.09003 * 109.47189 * 300.00034 * 1 2 3 30 30 H 1.09002 * 109.47545 * 59.99915 * 1 2 3 31 31 H 1.09001 * 109.47246 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46808 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47116 * 299.99858 * 3 2 1 34 34 H 1.09003 * 109.47213 * 59.99980 * 3 2 1 35 35 H 0.96998 * 120.00172 * 0.02562 * 6 4 2 36 36 H 1.08992 * 110.36920 * 322.22707 * 9 7 6 37 37 H 1.09007 * 110.36395 * 199.90000 * 9 7 6 38 38 H 0.97005 * 120.00070 * 180.02562 * 14 13 11 39 39 H 1.08998 * 109.88244 * 239.52376 * 19 10 9 40 40 H 1.09004 * 110.01332 * 118.43254 * 19 10 9 41 41 H 1.09001 * 109.47257 * 61.45315 * 21 20 19 42 42 H 1.09001 * 109.47271 * 181.45592 * 21 20 19 43 43 H 1.09005 * 109.47174 * 301.45273 * 21 20 19 44 44 H 1.08995 * 109.47186 * 58.54752 * 22 20 19 45 45 H 1.09002 * 109.47170 * 178.54306 * 22 20 19 46 46 H 1.08995 * 109.47190 * 298.54414 * 22 20 19 47 47 H 1.07998 * 120.00319 * 359.97438 * 24 23 2 48 48 H 1.07995 * 120.00295 * 180.23619 * 25 24 23 49 49 H 1.08003 * 119.99641 * 179.72623 * 26 25 24 50 50 H 1.08002 * 119.99639 * 179.97438 * 27 26 25 51 51 H 1.08003 * 120.00553 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.6616 -1.7414 1.1210 6 7 1.7823 -0.2000 2.4525 7 6 2.2710 -0.8903 3.6487 8 1 2.3085 -1.9678 3.4882 9 6 3.6558 -0.3445 4.0778 10 7 3.3594 0.8914 4.8248 11 6 4.2176 1.9442 4.9986 12 1 3.9043 2.8084 5.5656 13 6 5.4902 1.9009 4.4458 14 7 5.8716 0.8481 3.7541 15 14 6.6606 3.3373 4.6823 16 1 7.4595 3.1269 5.9162 17 1 7.5713 3.4315 3.5130 18 1 5.8816 4.5956 4.8056 19 6 1.9900 0.8060 5.3531 20 6 1.4019 -0.5421 4.8860 21 6 1.5577 -1.6067 5.9738 22 6 -0.0669 -0.3833 4.4883 23 6 2.0323 -0.7104 -1.2304 24 6 2.9207 -0.0776 -2.0796 25 6 3.3852 -0.7310 -3.2058 26 6 2.9532 -2.0134 -3.4882 27 6 2.0608 -2.6443 -2.6418 28 6 1.6004 -1.9927 -1.5129 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.2787 0.6244 2.5401 36 1 4.2639 -0.1213 3.2012 37 1 4.1644 -1.0633 4.7204 38 1 6.7610 0.8176 3.3681 39 1 1.3899 1.6276 4.9620 40 1 2.0072 0.8455 6.4423 41 1 1.0109 -1.2983 6.8649 42 1 1.1598 -2.5553 5.6134 43 1 2.6134 -1.7249 6.2180 44 1 -0.1497 0.3558 3.6915 45 1 -0.4540 -1.3401 4.1378 46 1 -0.6435 -0.0525 5.3521 47 1 3.2544 0.9261 -1.8616 48 1 4.0822 -0.2380 -3.8672 49 1 3.3127 -2.5223 -4.3704 50 1 1.7231 -3.6461 -2.8627 51 1 0.9032 -2.4858 -0.8516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977562863.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:23 Heat of formation + Delta-G solvation = -8.839105 kcal Electronic energy + Delta-G solvation = -30143.467893 eV Core-core repulsion = 26428.345924 eV Total energy + Delta-G solvation = -3715.121969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.73083 -40.35561 -39.07153 -36.22973 -35.64014 -34.34511 -32.59722 -31.90755 -30.69804 -29.63675 -28.33346 -28.02024 -27.39759 -25.47242 -24.63810 -23.19458 -22.90648 -21.83611 -20.64048 -19.83720 -18.70012 -18.24356 -17.64226 -17.28680 -16.64607 -16.08334 -15.90611 -15.63991 -15.59032 -15.27586 -15.03030 -14.88414 -14.65107 -14.32888 -14.22606 -13.73763 -13.67347 -13.59596 -13.31314 -13.18512 -13.05544 -13.02568 -12.98840 -12.81099 -12.65166 -12.62176 -12.55322 -12.43356 -12.09145 -11.77775 -11.77171 -11.70420 -11.59499 -11.42578 -11.34268 -10.80202 -10.59186 -9.88835 -9.73826 -9.58101 -8.83835 -7.74771 -5.19968 0.47364 0.56890 1.44168 1.45694 1.54473 1.75148 2.31273 2.48922 2.98058 3.34917 3.51123 3.59461 3.69428 3.78340 3.94570 3.99791 4.07596 4.09233 4.19579 4.23229 4.30368 4.43511 4.52799 4.60124 4.67800 4.72311 4.76056 4.81628 4.83644 4.86589 4.89516 4.91896 4.93748 5.04673 5.11376 5.12597 5.19414 5.20738 5.21873 5.26231 5.32990 5.34178 5.49682 5.54480 5.62392 5.65527 5.73255 5.75340 5.85154 6.16801 6.31726 6.69095 7.09911 7.38597 7.80169 8.44054 9.25461 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010985 B = 0.004449 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.418830 B = 6291.524444 C = 7857.135978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.036 4.036 3 C -0.138 4.138 4 C 0.519 3.481 5 O -0.581 6.581 6 N -0.689 5.689 7 C 0.136 3.864 8 H 0.076 0.924 9 C 0.156 3.844 10 N -0.616 5.616 11 C -0.231 4.231 12 H 0.085 0.915 13 C -0.066 4.066 14 N -0.949 5.949 15 Si 0.974 3.026 16 H -0.290 1.290 17 H -0.299 1.299 18 H -0.264 1.264 19 C 0.138 3.862 20 C -0.074 4.074 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.072 4.072 24 C -0.133 4.133 25 C -0.132 4.132 26 C -0.128 4.128 27 C -0.132 4.132 28 C -0.105 4.105 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.406 0.594 36 H 0.068 0.932 37 H -0.020 1.020 38 H 0.241 0.759 39 H 0.036 0.964 40 H 0.024 0.976 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.031 0.969 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.129 0.871 48 H 0.140 0.860 49 H 0.145 0.855 50 H 0.139 0.861 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.163 -2.159 -9.974 19.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.039 4.039 3 C -0.196 4.196 4 C 0.306 3.694 5 O -0.461 6.461 6 N -0.340 5.340 7 C 0.030 3.970 8 H 0.094 0.906 9 C 0.030 3.970 10 N -0.342 5.342 11 C -0.360 4.360 12 H 0.102 0.898 13 C -0.259 4.259 14 N -0.599 5.599 15 Si 0.803 3.197 16 H -0.217 1.217 17 H -0.226 1.226 18 H -0.188 1.188 19 C 0.014 3.986 20 C -0.075 4.075 21 C -0.184 4.184 22 C -0.180 4.180 23 C -0.072 4.072 24 C -0.151 4.151 25 C -0.150 4.150 26 C -0.146 4.146 27 C -0.150 4.150 28 C -0.123 4.123 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.243 0.757 36 H 0.086 0.914 37 H -0.002 1.002 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.042 0.958 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.050 0.950 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.146 0.854 48 H 0.157 0.843 49 H 0.162 0.838 50 H 0.157 0.843 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.546 -2.794 -10.067 18.730 hybrid contribution 1.517 0.793 0.539 1.794 sum -14.029 -2.001 -9.528 17.076 Atomic orbital electron populations 1.21868 0.89140 1.03275 1.04414 1.19722 0.99141 0.95742 0.89339 1.21925 1.00557 0.92953 1.04129 1.20918 0.78687 0.84611 0.85200 1.90665 1.41759 1.26544 1.87118 1.45647 1.55967 1.27700 1.04646 1.22126 0.94668 0.95642 0.84588 0.90564 1.21921 0.93266 0.86152 0.95688 1.44666 1.11634 1.16699 1.61179 1.19438 0.93753 0.95696 1.27137 0.89754 1.25582 0.99256 1.00191 1.00828 1.70125 1.18656 1.30285 1.40806 0.85132 0.78787 0.79399 0.76363 1.21740 1.22624 1.18848 1.21638 0.85360 0.95350 0.96297 1.21826 0.96339 0.95376 0.93969 1.21690 1.00977 0.97861 0.97873 1.21679 0.91992 1.02394 1.01986 1.19487 0.97903 0.95088 0.94740 1.21383 0.97246 1.01072 0.95400 1.21411 1.00254 0.95752 0.97536 1.21454 0.97543 0.95208 1.00363 1.21394 0.98215 1.00587 0.94763 1.21030 1.00169 0.94125 0.96949 0.90245 0.89471 0.91929 0.94302 0.88618 0.91222 0.75737 0.91436 1.00200 0.94898 0.94559 0.95784 0.90344 0.91205 0.95004 0.92145 0.91529 0.90523 0.85367 0.84255 0.83772 0.84276 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.16 71.98 0.59 -1.93 16 2 C -0.04 -1.00 0.72 -53.67 -0.04 -1.04 16 3 C -0.14 -3.63 7.01 71.98 0.50 -3.12 16 4 C 0.52 18.84 6.40 87.66 0.56 19.40 16 5 O -0.58 -26.33 14.97 -3.04 -0.05 -26.37 16 6 N -0.69 -23.72 4.33 -435.96 -1.89 -25.61 16 7 C 0.14 5.33 2.67 46.38 0.12 5.45 16 8 H 0.08 3.15 7.44 -2.39 -0.02 3.13 16 9 C 0.16 8.06 5.26 86.86 0.46 8.51 16 10 N -0.62 -30.98 3.39 -691.98 -2.35 -33.33 16 11 C -0.23 -12.79 10.27 84.04 0.86 -11.92 16 12 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 13 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 14 N -0.95 -58.94 10.09 21.65 0.22 -58.72 16 15 Si 0.97 46.33 29.55 68.60 2.03 48.35 16 16 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 17 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 19 C 0.14 5.30 6.41 86.73 0.56 5.86 16 20 C -0.07 -2.32 0.80 -50.99 -0.04 -2.36 16 21 C -0.13 -3.67 8.44 71.98 0.61 -3.06 16 22 C -0.12 -2.72 8.16 71.98 0.59 -2.14 16 23 C -0.07 -2.10 4.33 -19.87 -0.09 -2.19 16 24 C -0.13 -3.72 8.99 22.27 0.20 -3.52 16 25 C -0.13 -3.22 10.05 22.27 0.22 -3.00 16 26 C -0.13 -2.92 10.05 22.27 0.22 -2.69 16 27 C -0.13 -3.23 10.05 22.27 0.22 -3.00 16 28 C -0.10 -2.95 8.15 22.27 0.18 -2.77 16 29 H 0.08 1.29 7.88 -2.39 -0.02 1.27 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.22 7.08 -2.39 -0.02 1.20 16 32 H 0.04 1.25 7.25 -2.39 -0.02 1.23 16 33 H 0.10 1.92 7.78 -2.38 -0.02 1.90 16 34 H 0.07 1.74 7.33 -2.39 -0.02 1.72 16 35 H 0.41 12.11 6.02 -92.71 -0.56 11.55 16 36 H 0.07 4.13 5.87 -2.39 -0.01 4.11 16 37 H -0.02 -1.14 7.71 -2.38 -0.02 -1.16 16 38 H 0.24 14.83 8.31 -92.70 -0.77 14.06 16 39 H 0.04 1.30 7.82 -2.39 -0.02 1.28 16 40 H 0.02 0.93 7.84 -2.38 -0.02 0.91 16 41 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.03 1.11 7.44 -2.38 -0.02 1.09 16 44 H 0.06 1.25 6.34 -2.39 -0.02 1.24 16 45 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.13 3.37 5.91 -2.91 -0.02 3.35 16 48 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 49 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 50 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 51 H 0.12 3.17 7.23 -2.91 -0.02 3.15 16 Total: -1.00 -74.98 393.02 4.52 -70.46 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: 0.35 Total: 32.07 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 6.20 Total: -6.85 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -4.02 Total: -117.66 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.05 Total: -26.37 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -74.98 4.52 -70.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977562863.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.623 kcal (2) G-P(sol) polarization free energy of solvation -74.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds