Wall clock time and date at job start Tue Mar 31 2020 16:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47486 * 2 1 4 4 C 1.50699 * 109.47279 * 120.00730 * 2 1 3 5 5 O 1.21272 * 120.00680 * 115.56576 * 4 2 1 6 6 N 1.34778 * 119.99457 * 295.56050 * 4 2 1 7 7 C 1.46503 * 119.99814 * 180.02562 * 6 4 2 8 8 H 1.08998 * 110.78149 * 36.78925 * 7 6 4 9 9 C 1.54327 * 110.71841 * 273.54829 * 7 6 4 10 10 N 1.47029 * 107.40109 * 263.75356 * 9 7 6 11 11 C 1.36938 * 125.64651 * 181.10569 * 10 9 7 12 12 H 1.07999 * 120.00000 * 180.02562 * 11 10 9 13 13 C 1.38817 * 119.99868 * 0.02562 * 11 10 9 14 14 N 1.31614 * 120.00140 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99562 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46902 * 90.00004 * 15 13 11 17 17 H 1.48500 * 109.47137 * 209.99890 * 15 13 11 18 18 H 1.48495 * 109.47285 * 330.00215 * 15 13 11 19 19 C 1.47744 * 108.53071 * 1.18022 * 10 9 7 20 20 C 1.54913 * 104.84048 * 335.75245 * 19 10 9 21 21 C 1.52997 * 111.00513 * 279.01563 * 20 19 10 22 22 C 1.53007 * 111.00112 * 155.16609 * 20 19 10 23 23 C 1.50704 * 109.46942 * 240.00174 * 2 1 3 24 24 C 1.38233 * 119.99858 * 125.66543 * 23 2 1 25 25 C 1.38245 * 119.99812 * 179.78901 * 24 23 2 26 26 C 1.38238 * 119.99754 * 0.45856 * 25 24 23 27 27 C 1.38236 * 120.00072 * 359.77733 * 26 25 24 28 28 C 1.38236 * 120.00207 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.46599 * 300.00267 * 1 2 3 30 30 H 1.08997 * 109.46755 * 59.99456 * 1 2 3 31 31 H 1.08995 * 109.47251 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47318 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47195 * 300.00056 * 3 2 1 34 34 H 1.09000 * 109.46702 * 60.00398 * 3 2 1 35 35 H 0.97004 * 120.00228 * 0.02562 * 6 4 2 36 36 H 1.08994 * 109.88228 * 23.24749 * 9 7 6 37 37 H 1.09000 * 109.88294 * 144.26004 * 9 7 6 38 38 H 0.96997 * 119.99599 * 180.02562 * 14 13 11 39 39 H 1.08997 * 110.29274 * 216.94499 * 19 10 9 40 40 H 1.09002 * 110.43221 * 94.62943 * 19 10 9 41 41 H 1.08999 * 109.47156 * 172.19840 * 21 20 19 42 42 H 1.08998 * 109.47047 * 292.19713 * 21 20 19 43 43 H 1.08996 * 109.46659 * 52.20022 * 21 20 19 44 44 H 1.08999 * 109.47032 * 307.80269 * 22 20 19 45 45 H 1.09000 * 109.47024 * 67.80460 * 22 20 19 46 46 H 1.09001 * 109.46926 * 187.80317 * 22 20 19 47 47 H 1.07997 * 120.00527 * 0.02562 * 24 23 2 48 48 H 1.07992 * 120.00040 * 180.25190 * 25 24 23 49 49 H 1.07997 * 119.99885 * 179.78286 * 26 25 24 50 50 H 1.07998 * 119.99785 * 179.97438 * 27 26 25 51 51 H 1.07992 * 120.00106 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.6618 -1.7413 1.1209 6 7 1.7822 -0.2003 2.4525 7 6 2.2710 -0.8907 3.6486 8 1 3.2511 -1.3317 3.4672 9 6 1.2645 -1.9668 4.1075 10 7 0.4299 -1.3682 5.1595 11 6 -0.5716 -2.0049 5.8427 12 1 -1.1296 -1.4753 6.6007 13 6 -0.8697 -3.3311 5.5608 14 7 -0.1894 -3.9766 4.6374 15 14 -2.2365 -4.1994 6.4923 16 1 -3.5212 -4.0162 5.7705 17 1 -1.9259 -5.6482 6.5901 18 1 -2.3488 -3.6239 7.8566 19 6 0.8527 0.0342 5.3532 20 6 2.3205 0.0778 4.8598 21 6 3.2766 -0.4391 5.9366 22 6 2.7085 1.4901 4.4171 23 6 2.0323 -0.7104 -1.2305 24 6 2.9208 -0.0776 -2.0797 25 6 3.3849 -0.7308 -3.2061 26 6 2.9532 -2.0134 -3.4884 27 6 2.0610 -2.6444 -2.6418 28 6 1.6000 -1.9927 -1.5132 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 1.2784 0.6240 2.5401 36 1 0.6401 -2.2724 3.2680 37 1 1.7995 -2.8295 4.5047 38 1 -0.3980 -4.9031 4.4403 39 1 0.7989 0.3030 6.4081 40 1 0.2323 0.7043 4.7580 41 1 4.2796 -0.5284 5.5194 42 1 3.2922 0.2587 6.7738 43 1 2.9391 -1.4156 6.2836 44 1 1.9740 1.8615 3.7024 45 1 2.7357 2.1484 5.2854 46 1 3.6921 1.4665 3.9481 47 1 3.2553 0.9258 -1.8611 48 1 4.0821 -0.2380 -3.8673 49 1 3.3131 -2.5225 -4.3702 50 1 1.7234 -3.6462 -2.8626 51 1 0.9026 -2.4855 -0.8521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977562865.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:27 Heat of formation + Delta-G solvation = 9.153277 kcal Electronic energy + Delta-G solvation = -29945.218314 eV Core-core repulsion = 26230.876553 eV Total energy + Delta-G solvation = -3714.341761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.50917 -39.05445 -37.72442 -35.11659 -33.81649 -32.88114 -30.95569 -30.67803 -29.66298 -27.97248 -27.44109 -26.77843 -25.61973 -24.12956 -23.30042 -22.19507 -21.59724 -20.12444 -19.29668 -18.56545 -17.12514 -16.70197 -16.47401 -15.75761 -15.06596 -14.83682 -14.70491 -14.18013 -14.09078 -14.02443 -13.82771 -13.73065 -13.39158 -13.25577 -12.64853 -12.56409 -12.44360 -12.15037 -12.14309 -11.95904 -11.95411 -11.75888 -11.64454 -11.49674 -11.35169 -11.05631 -10.97075 -10.80509 -10.75833 -10.64197 -10.36287 -10.22348 -9.96266 -9.85768 -9.62511 -9.27513 -8.77344 -8.63545 -8.57639 -8.36892 -6.80483 -5.66786 -3.01644 1.43858 1.53959 3.08781 3.41048 3.45953 3.48472 3.55121 4.00106 4.50392 4.51491 4.75538 4.91414 4.96254 5.06528 5.10897 5.12548 5.25705 5.28470 5.31207 5.47513 5.53408 5.55165 5.64211 5.67613 5.67945 5.77810 5.80789 5.82514 5.92366 5.97597 6.03868 6.09595 6.15225 6.17324 6.19463 6.21482 6.26623 6.41364 6.55164 6.59974 6.62377 6.62880 6.69235 6.74677 6.79766 6.99209 7.10475 7.58173 7.68812 7.86164 8.01581 8.28014 8.71249 9.24248 9.84767 10.50918 11.43544 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012802 B = 0.003873 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.701736 B = 7227.973433 C = 8562.242500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.044 4.044 3 C -0.142 4.142 4 C 0.522 3.478 5 O -0.530 6.530 6 N -0.708 5.708 7 C 0.125 3.875 8 H 0.085 0.915 9 C 0.177 3.823 10 N -0.602 5.602 11 C -0.230 4.230 12 H 0.077 0.923 13 C -0.006 4.006 14 N -0.917 5.917 15 Si 0.909 3.091 16 H -0.290 1.290 17 H -0.291 1.291 18 H -0.282 1.282 19 C 0.144 3.856 20 C -0.089 4.089 21 C -0.126 4.126 22 C -0.130 4.130 23 C -0.055 4.055 24 C -0.118 4.118 25 C -0.127 4.127 26 C -0.125 4.125 27 C -0.121 4.121 28 C -0.084 4.084 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.393 0.607 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.252 0.748 39 H 0.040 0.960 40 H 0.015 0.985 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.050 0.950 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.123 0.877 48 H 0.117 0.883 49 H 0.117 0.883 50 H 0.120 0.880 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.249 12.450 -11.964 18.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.047 4.047 3 C -0.199 4.199 4 C 0.307 3.693 5 O -0.406 6.406 6 N -0.359 5.359 7 C 0.020 3.980 8 H 0.103 0.897 9 C 0.051 3.949 10 N -0.329 5.329 11 C -0.358 4.358 12 H 0.095 0.905 13 C -0.203 4.203 14 N -0.565 5.565 15 Si 0.740 3.260 16 H -0.217 1.217 17 H -0.217 1.217 18 H -0.208 1.208 19 C 0.017 3.983 20 C -0.091 4.091 21 C -0.183 4.183 22 C -0.188 4.188 23 C -0.055 4.055 24 C -0.136 4.136 25 C -0.145 4.145 26 C -0.143 4.143 27 C -0.139 4.139 28 C -0.102 4.102 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.229 0.771 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.033 0.967 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.141 0.859 48 H 0.136 0.864 49 H 0.135 0.865 50 H 0.138 0.862 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.607 11.461 -12.009 17.867 hybrid contribution -1.028 -0.258 0.534 1.187 sum 5.579 11.204 -11.476 16.981 Atomic orbital electron populations 1.21866 0.91544 1.03437 1.02632 1.19732 0.97460 0.95797 0.91714 1.21945 1.01666 0.93526 1.02754 1.20147 0.79926 0.85114 0.84119 1.90716 1.40053 1.23348 1.86481 1.45984 1.56641 1.27841 1.05434 1.22443 0.99038 0.93800 0.82674 0.89711 1.21493 0.90476 0.91349 0.91566 1.44507 1.39189 1.06499 1.42701 1.19011 1.08469 0.93708 1.14593 0.90548 1.24796 0.99596 0.96796 0.99090 1.69970 1.42019 1.10528 1.33939 0.86163 0.81631 0.79043 0.79170 1.21715 1.21720 1.20755 1.21678 0.90496 0.88252 0.97835 1.22002 0.97483 0.94248 0.95363 1.21593 0.97427 1.02179 0.97127 1.21676 1.00716 0.95779 1.00645 1.19314 0.97193 0.94574 0.94430 1.21091 0.97455 1.00172 0.94920 1.21032 1.00461 0.95341 0.97671 1.21095 0.98194 0.95363 0.99635 1.21116 0.98017 0.99787 0.95026 1.21012 0.99140 0.93928 0.96097 0.91535 0.91518 0.91495 0.91744 0.91231 0.91782 0.77149 0.93449 0.93022 0.93737 0.94156 0.96742 0.93385 0.92923 0.91202 0.93142 0.92661 0.92843 0.85889 0.86448 0.86521 0.86235 0.86046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.17 37.16 0.30 -1.40 16 2 C -0.04 -0.58 0.72 -156.81 -0.11 -0.69 16 3 C -0.14 -1.40 7.01 37.16 0.26 -1.14 16 4 C 0.52 8.98 6.40 -10.99 -0.07 8.91 16 5 O -0.53 -11.37 15.06 5.56 0.08 -11.29 16 6 N -0.71 -11.62 4.39 -52.03 -0.23 -11.85 16 7 C 0.13 2.38 2.51 -66.09 -0.17 2.22 16 8 H 0.08 1.71 7.61 -51.93 -0.40 1.31 16 9 C 0.18 4.34 4.79 -3.06 -0.01 4.32 16 10 N -0.60 -14.93 3.39 -169.81 -0.58 -15.51 16 11 C -0.23 -6.32 10.29 -15.06 -0.15 -6.47 16 12 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 13 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 14 N -0.92 -27.37 10.31 55.49 0.57 -26.80 16 15 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C 0.14 2.81 6.16 -2.35 -0.01 2.79 16 20 C -0.09 -1.47 0.83 -152.35 -0.13 -1.59 16 21 C -0.13 -2.01 8.57 37.16 0.32 -1.69 16 22 C -0.13 -1.64 8.22 37.16 0.31 -1.34 16 23 C -0.05 -0.77 4.33 -104.62 -0.45 -1.22 16 24 C -0.12 -1.44 8.99 -39.58 -0.36 -1.80 16 25 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 26 C -0.12 -1.46 10.05 -39.58 -0.40 -1.85 16 27 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 28 C -0.08 -1.25 8.15 -39.58 -0.32 -1.58 16 29 H 0.07 0.79 7.88 -51.93 -0.41 0.38 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.94 7.08 -51.93 -0.37 0.58 16 32 H 0.06 0.64 7.25 -51.93 -0.38 0.27 16 33 H 0.07 0.57 7.78 -51.93 -0.40 0.17 16 34 H 0.06 0.56 7.33 -51.93 -0.38 0.18 16 35 H 0.39 5.56 5.79 -40.82 -0.24 5.33 16 36 H 0.05 1.34 7.41 -51.93 -0.38 0.95 16 37 H 0.05 1.45 7.37 -51.93 -0.38 1.07 16 38 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 40 H 0.02 0.28 7.98 -51.93 -0.41 -0.13 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 1.33 7.91 -51.93 -0.41 0.92 16 44 H 0.05 0.58 6.38 -51.93 -0.33 0.25 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.12 1.22 5.91 -52.49 -0.31 0.91 16 48 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 49 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 50 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 51 H 0.12 1.95 7.23 -52.49 -0.38 1.57 16 LS Contribution 394.73 15.07 5.95 5.95 Total: -1.00 -32.81 394.73 -9.64 -42.45 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -8.53 Total: 6.46 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -1.89 Total: -6.62 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.23 Total: -54.15 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.81 -9.64 -42.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977562865.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.607 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds