Wall clock time and date at job start Tue Mar 31 2020 16:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47486 * 2 1 4 4 C 1.50699 * 109.47279 * 120.00730 * 2 1 3 5 5 O 1.21272 * 120.00680 * 115.56576 * 4 2 1 6 6 N 1.34778 * 119.99457 * 295.56050 * 4 2 1 7 7 C 1.46503 * 119.99814 * 180.02562 * 6 4 2 8 8 H 1.08998 * 110.78149 * 36.78925 * 7 6 4 9 9 C 1.54327 * 110.71841 * 273.54829 * 7 6 4 10 10 N 1.47029 * 107.40109 * 263.75356 * 9 7 6 11 11 C 1.36938 * 125.64651 * 181.10569 * 10 9 7 12 12 H 1.07999 * 120.00000 * 180.02562 * 11 10 9 13 13 C 1.38817 * 119.99868 * 0.02562 * 11 10 9 14 14 N 1.31614 * 120.00140 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99562 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46902 * 90.00004 * 15 13 11 17 17 H 1.48500 * 109.47137 * 209.99890 * 15 13 11 18 18 H 1.48495 * 109.47285 * 330.00215 * 15 13 11 19 19 C 1.47744 * 108.53071 * 1.18022 * 10 9 7 20 20 C 1.54913 * 104.84048 * 335.75245 * 19 10 9 21 21 C 1.52997 * 111.00513 * 279.01563 * 20 19 10 22 22 C 1.53007 * 111.00112 * 155.16609 * 20 19 10 23 23 C 1.50704 * 109.46942 * 240.00174 * 2 1 3 24 24 C 1.38233 * 119.99858 * 125.66543 * 23 2 1 25 25 C 1.38245 * 119.99812 * 179.78901 * 24 23 2 26 26 C 1.38238 * 119.99754 * 0.45856 * 25 24 23 27 27 C 1.38236 * 120.00072 * 359.77733 * 26 25 24 28 28 C 1.38236 * 120.00207 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.46599 * 300.00267 * 1 2 3 30 30 H 1.08997 * 109.46755 * 59.99456 * 1 2 3 31 31 H 1.08995 * 109.47251 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47318 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47195 * 300.00056 * 3 2 1 34 34 H 1.09000 * 109.46702 * 60.00398 * 3 2 1 35 35 H 0.97004 * 120.00228 * 0.02562 * 6 4 2 36 36 H 1.08994 * 109.88228 * 23.24749 * 9 7 6 37 37 H 1.09000 * 109.88294 * 144.26004 * 9 7 6 38 38 H 0.96997 * 119.99599 * 180.02562 * 14 13 11 39 39 H 1.08997 * 110.29274 * 216.94499 * 19 10 9 40 40 H 1.09002 * 110.43221 * 94.62943 * 19 10 9 41 41 H 1.08999 * 109.47156 * 172.19840 * 21 20 19 42 42 H 1.08998 * 109.47047 * 292.19713 * 21 20 19 43 43 H 1.08996 * 109.46659 * 52.20022 * 21 20 19 44 44 H 1.08999 * 109.47032 * 307.80269 * 22 20 19 45 45 H 1.09000 * 109.47024 * 67.80460 * 22 20 19 46 46 H 1.09001 * 109.46926 * 187.80317 * 22 20 19 47 47 H 1.07997 * 120.00527 * 0.02562 * 24 23 2 48 48 H 1.07992 * 120.00040 * 180.25190 * 25 24 23 49 49 H 1.07997 * 119.99885 * 179.78286 * 26 25 24 50 50 H 1.07998 * 119.99785 * 179.97438 * 27 26 25 51 51 H 1.07992 * 120.00106 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.6618 -1.7413 1.1209 6 7 1.7822 -0.2003 2.4525 7 6 2.2710 -0.8907 3.6486 8 1 3.2511 -1.3317 3.4672 9 6 1.2645 -1.9668 4.1075 10 7 0.4299 -1.3682 5.1595 11 6 -0.5716 -2.0049 5.8427 12 1 -1.1296 -1.4753 6.6007 13 6 -0.8697 -3.3311 5.5608 14 7 -0.1894 -3.9766 4.6374 15 14 -2.2365 -4.1994 6.4923 16 1 -3.5212 -4.0162 5.7705 17 1 -1.9259 -5.6482 6.5901 18 1 -2.3488 -3.6239 7.8566 19 6 0.8527 0.0342 5.3532 20 6 2.3205 0.0778 4.8598 21 6 3.2766 -0.4391 5.9366 22 6 2.7085 1.4901 4.4171 23 6 2.0323 -0.7104 -1.2305 24 6 2.9208 -0.0776 -2.0797 25 6 3.3849 -0.7308 -3.2061 26 6 2.9532 -2.0134 -3.4884 27 6 2.0610 -2.6444 -2.6418 28 6 1.6000 -1.9927 -1.5132 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 1.2784 0.6240 2.5401 36 1 0.6401 -2.2724 3.2680 37 1 1.7995 -2.8295 4.5047 38 1 -0.3980 -4.9031 4.4403 39 1 0.7989 0.3030 6.4081 40 1 0.2323 0.7043 4.7580 41 1 4.2796 -0.5284 5.5194 42 1 3.2922 0.2587 6.7738 43 1 2.9391 -1.4156 6.2836 44 1 1.9740 1.8615 3.7024 45 1 2.7357 2.1484 5.2854 46 1 3.6921 1.4665 3.9481 47 1 3.2553 0.9258 -1.8611 48 1 4.0821 -0.2380 -3.8673 49 1 3.3131 -2.5225 -4.3702 50 1 1.7234 -3.6462 -2.8626 51 1 0.9026 -2.4855 -0.8521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977562865.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:26 Heat of formation + Delta-G solvation = -10.307109 kcal Electronic energy + Delta-G solvation = -29946.062179 eV Core-core repulsion = 26230.876553 eV Total energy + Delta-G solvation = -3715.185627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.77398 -40.36774 -39.08853 -36.25894 -35.66686 -34.34201 -32.60556 -31.91480 -30.71696 -29.61430 -28.32166 -28.05428 -27.40990 -25.53819 -24.66916 -23.20722 -22.91009 -21.86418 -20.68344 -19.88428 -18.68994 -18.23415 -17.67488 -17.20707 -16.69147 -16.20832 -15.85832 -15.75501 -15.41919 -15.31910 -15.24982 -14.91418 -14.72062 -14.35098 -14.02603 -13.80681 -13.65619 -13.45806 -13.29880 -13.25629 -13.12291 -13.02781 -12.95334 -12.82181 -12.68914 -12.61584 -12.55143 -12.44208 -12.13467 -11.86134 -11.76232 -11.72297 -11.60348 -11.49497 -11.30177 -10.80105 -10.61316 -9.94479 -9.75485 -9.60260 -8.89704 -7.83916 -5.20676 0.45783 0.55555 1.42231 1.44442 1.53294 1.71639 2.25700 2.48083 2.96522 3.34246 3.49185 3.50411 3.71795 3.78262 3.92370 3.97749 4.06276 4.08740 4.18432 4.22719 4.30065 4.40490 4.53453 4.60017 4.65151 4.69418 4.72524 4.82457 4.85544 4.87091 4.89045 4.91828 4.95962 5.05998 5.12136 5.13969 5.17146 5.18045 5.20025 5.26796 5.33889 5.36903 5.45339 5.57120 5.61163 5.65302 5.72293 5.75220 5.78385 6.16008 6.16673 6.64886 7.07383 7.35934 7.77442 8.42291 9.25020 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012802 B = 0.003873 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.701736 B = 7227.973433 C = 8562.242500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.036 4.036 3 C -0.138 4.138 4 C 0.516 3.484 5 O -0.581 6.581 6 N -0.696 5.696 7 C 0.139 3.861 8 H 0.071 0.929 9 C 0.197 3.803 10 N -0.620 5.620 11 C -0.235 4.235 12 H 0.088 0.912 13 C -0.070 4.070 14 N -0.954 5.954 15 Si 0.976 3.024 16 H -0.287 1.287 17 H -0.300 1.300 18 H -0.264 1.264 19 C 0.138 3.862 20 C -0.074 4.074 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.073 4.073 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.126 4.126 27 C -0.138 4.138 28 C -0.115 4.115 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.408 0.592 36 H -0.003 1.003 37 H -0.001 1.001 38 H 0.242 0.758 39 H 0.048 0.952 40 H 0.033 0.967 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.027 0.973 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.152 0.848 48 H 0.152 0.848 49 H 0.144 0.856 50 H 0.125 0.875 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.099 16.835 -12.629 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.039 4.039 3 C -0.195 4.195 4 C 0.303 3.697 5 O -0.460 6.460 6 N -0.348 5.348 7 C 0.032 3.968 8 H 0.089 0.911 9 C 0.070 3.930 10 N -0.346 5.346 11 C -0.364 4.364 12 H 0.106 0.894 13 C -0.262 4.262 14 N -0.604 5.604 15 Si 0.805 3.195 16 H -0.214 1.214 17 H -0.227 1.227 18 H -0.188 1.188 19 C 0.013 3.987 20 C -0.075 4.075 21 C -0.181 4.181 22 C -0.181 4.181 23 C -0.073 4.073 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.144 4.144 27 C -0.156 4.156 28 C -0.133 4.133 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.246 0.754 36 H 0.015 0.985 37 H 0.017 0.983 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.046 0.954 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.170 0.830 48 H 0.170 0.830 49 H 0.162 0.838 50 H 0.143 0.857 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.438 15.931 -12.654 21.662 hybrid contribution -1.283 -1.662 0.729 2.223 sum 6.155 14.269 -11.926 19.588 Atomic orbital electron populations 1.21865 0.91266 1.01861 1.04211 1.19742 0.97543 0.97573 0.89043 1.21998 1.01945 0.90682 1.04921 1.21047 0.78770 0.84506 0.85358 1.90691 1.42416 1.25659 1.87264 1.45806 1.56503 1.27930 1.04517 1.22020 0.96337 0.93497 0.84914 0.91122 1.21025 0.90290 0.91990 0.89686 1.44753 1.38661 1.08850 1.42352 1.19484 1.08601 0.94018 1.14317 0.89444 1.25669 1.02293 0.97893 1.00376 1.70257 1.43983 1.10090 1.36026 0.85105 0.78606 0.77168 0.78656 1.21415 1.22693 1.18811 1.21962 0.92592 0.85342 0.98789 1.21983 0.95679 0.96290 0.93585 1.21592 0.97984 1.00579 0.97985 1.21657 1.01764 0.92522 1.02140 1.19499 0.98191 0.94352 0.95266 1.21444 0.96345 1.01360 0.94567 1.21497 1.00124 0.95036 0.97627 1.21452 0.97166 0.95842 0.99940 1.21316 0.98849 1.00362 0.95080 1.20979 1.00164 0.95264 0.96892 0.90906 0.88821 0.94734 0.91341 0.88608 0.90154 0.75370 0.98495 0.98266 0.94915 0.93331 0.94916 0.91724 0.90175 0.95395 0.91602 0.90238 0.91562 0.83045 0.83021 0.83792 0.85698 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 8.17 71.98 0.59 -2.75 16 2 C -0.04 -0.93 0.72 -53.67 -0.04 -0.96 16 3 C -0.14 -2.24 7.01 71.98 0.50 -1.73 16 4 C 0.52 18.29 6.40 87.66 0.56 18.85 16 5 O -0.58 -26.68 15.06 -3.01 -0.05 -26.72 16 6 N -0.70 -22.82 4.39 -436.91 -1.92 -24.73 16 7 C 0.14 5.43 2.51 46.18 0.12 5.54 16 8 H 0.07 2.99 7.61 -2.39 -0.02 2.97 16 9 C 0.20 10.38 4.79 86.73 0.42 10.79 16 10 N -0.62 -31.74 3.39 -691.14 -2.34 -34.08 16 11 C -0.24 -13.28 10.29 84.03 0.86 -12.42 16 12 H 0.09 4.64 7.83 -2.91 -0.02 4.61 16 13 C -0.07 -4.11 5.49 84.86 0.47 -3.64 16 14 N -0.95 -61.13 10.31 21.65 0.22 -60.90 16 15 Si 0.98 47.28 29.55 68.60 2.03 49.30 16 16 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 17 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 18 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 19 C 0.14 5.21 6.16 86.79 0.53 5.74 16 20 C -0.07 -2.31 0.83 -50.79 -0.04 -2.35 16 21 C -0.12 -3.81 8.57 71.98 0.62 -3.19 16 22 C -0.12 -2.56 8.22 71.98 0.59 -1.96 16 23 C -0.07 -2.03 4.33 -19.86 -0.09 -2.11 16 24 C -0.12 -2.61 8.99 22.27 0.20 -2.41 16 25 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 26 C -0.13 -2.76 10.05 22.27 0.22 -2.53 16 27 C -0.14 -3.78 10.05 22.27 0.22 -3.55 16 28 C -0.11 -3.69 8.15 22.27 0.18 -3.51 16 29 H 0.07 1.66 7.88 -2.39 -0.02 1.65 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.03 1.06 7.08 -2.39 -0.02 1.04 16 32 H 0.07 1.09 7.25 -2.39 -0.02 1.07 16 33 H 0.10 1.10 7.78 -2.38 -0.02 1.08 16 34 H 0.08 1.05 7.33 -2.39 -0.02 1.03 16 35 H 0.41 10.75 5.79 -92.71 -0.54 10.22 16 36 H 0.00 -0.20 7.41 -2.39 -0.02 -0.21 16 37 H 0.00 -0.05 7.37 -2.39 -0.02 -0.07 16 38 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.05 1.78 8.05 -2.39 -0.02 1.76 16 40 H 0.03 1.15 7.98 -2.39 -0.02 1.13 16 41 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.03 1.07 7.91 -2.39 -0.02 1.05 16 44 H 0.07 1.18 6.38 -2.39 -0.02 1.17 16 45 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.15 2.36 5.91 -2.91 -0.02 2.35 16 48 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 49 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 50 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 51 H 0.09 3.31 7.23 -2.91 -0.02 3.29 16 Total: -1.00 -80.31 394.73 4.46 -75.85 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.37 Total: 25.74 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 6.14 Total: -4.45 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -4.04 Total: -119.72 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.05 Total: -26.72 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.30 kcal Total: -80.31 4.46 -75.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977562865.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.543 kcal (2) G-P(sol) polarization free energy of solvation -80.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds