Wall clock time and date at job start Tue Mar 31 2020 16:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46843 * 2 1 4 4 C 1.38237 * 120.00147 * 89.99914 * 3 2 1 5 5 C 1.38234 * 120.00111 * 180.02562 * 4 3 2 6 6 C 1.38233 * 120.00057 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00418 * 179.97438 * 6 5 4 8 8 C 1.53008 * 109.47032 * 89.99195 * 7 6 5 9 9 C 1.50699 * 109.46911 * 180.02562 * 8 7 6 10 10 O 1.21276 * 120.00093 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99910 * 180.02562 * 9 8 7 12 12 C 1.47427 * 125.64728 * 0.04329 * 11 9 8 13 13 C 1.54914 * 104.83164 * 204.09041 * 12 11 9 14 14 C 1.55157 * 101.58199 * 322.99100 * 13 12 11 15 15 H 1.09004 * 110.87300 * 277.07076 * 14 13 12 16 16 N 1.46491 * 110.71951 * 153.86443 * 14 13 12 17 17 C 1.46506 * 120.00004 * 306.47832 * 16 14 13 18 18 C 1.36939 * 120.00001 * 126.47795 * 16 14 13 19 19 H 1.07994 * 119.99969 * 341.16768 * 18 16 14 20 20 C 1.38813 * 120.00045 * 160.89892 * 18 16 14 21 21 N 1.31620 * 119.99639 * 346.72914 * 20 18 16 22 22 Si 1.86797 * 120.00161 * 166.73450 * 20 18 16 23 23 H 1.48496 * 109.47108 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47036 * 119.99578 * 22 20 18 25 25 H 1.48492 * 109.47148 * 239.99578 * 22 20 18 26 26 C 1.47023 * 125.64985 * 179.97438 * 11 9 8 27 27 C 1.38234 * 119.99890 * 0.24049 * 6 5 4 28 28 C 1.38237 * 120.00192 * 359.49966 * 27 6 5 29 29 H 1.08997 * 109.47115 * 299.99762 * 1 2 3 30 30 H 1.09000 * 109.47364 * 59.99925 * 1 2 3 31 31 H 1.09000 * 109.46886 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47115 * 240.00237 * 2 1 3 33 33 H 1.08993 * 109.47233 * 119.99738 * 2 1 3 34 34 H 1.08000 * 119.99598 * 0.02562 * 4 3 2 35 35 H 1.08004 * 120.00030 * 179.97438 * 5 4 3 36 36 H 1.08998 * 109.46833 * 330.00297 * 7 6 5 37 37 H 1.08992 * 109.47825 * 209.99397 * 7 6 5 38 38 H 1.09001 * 109.46617 * 60.00371 * 8 7 6 39 39 H 1.09000 * 109.47118 * 300.00091 * 8 7 6 40 40 H 1.08998 * 110.36740 * 322.93326 * 12 11 9 41 41 H 1.08998 * 110.36664 * 85.14433 * 12 11 9 42 42 H 1.08996 * 111.00452 * 204.91540 * 13 12 11 43 43 H 1.08997 * 111.00290 * 81.06816 * 13 12 11 44 44 H 1.08999 * 109.46704 * 264.81312 * 17 16 14 45 45 H 1.08995 * 109.47147 * 24.81395 * 17 16 14 46 46 H 1.08999 * 109.47110 * 144.81494 * 17 16 14 47 47 H 0.97005 * 119.99401 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.87916 * 59.56068 * 26 11 9 49 49 H 1.08996 * 110.01288 * 298.46754 * 26 11 9 50 50 H 1.08001 * 120.00073 * 179.73045 * 27 6 5 51 51 H 1.08001 * 120.00454 * 180.22546 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2626 2.0726 1.1972 5 6 2.7228 3.3760 1.1971 6 6 2.9522 4.0280 0.0000 7 6 3.4534 5.4493 -0.0001 8 6 4.9835 5.4505 -0.0006 9 6 5.4846 6.8717 0.0000 10 8 4.6957 7.7929 0.0011 11 7 6.8094 7.1191 -0.0008 12 6 7.8739 6.0991 -0.0031 13 6 9.1066 6.8110 0.6080 14 6 8.9613 8.2414 0.0246 15 1 9.3742 8.2937 -0.9828 16 7 9.6049 9.2254 0.8984 17 6 9.2525 9.2849 2.3191 18 6 10.5361 10.0896 0.3871 19 1 11.0203 9.8677 -0.5523 20 6 10.8535 11.2535 1.0737 21 7 10.0905 11.6613 2.0656 22 14 12.3635 12.2411 0.5898 23 1 13.0477 11.5742 -0.5470 24 1 11.9515 13.6095 0.1863 25 1 13.2919 12.3242 1.7458 26 6 7.4325 8.4508 -0.0010 27 6 2.7166 3.3782 -1.1971 28 6 2.2615 2.0729 -1.1972 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0830 1.5633 2.1324 35 1 2.9024 3.8853 2.1325 36 1 3.0900 5.9627 0.8901 37 1 3.0894 5.9629 -0.8898 38 1 5.3469 4.9370 -0.8907 39 1 5.3475 4.9369 0.8893 40 1 7.5843 5.2471 0.6119 41 1 8.0871 5.7756 -1.0219 42 1 10.0330 6.3447 0.2730 43 1 9.0497 6.8253 1.6964 44 1 8.4839 10.0427 2.4713 45 1 8.8746 8.3144 2.6407 46 1 10.1367 9.5419 2.9024 47 1 10.3122 12.4749 2.5451 48 1 7.1198 9.0064 0.8831 49 1 7.1478 8.9957 -0.9010 50 1 2.8917 3.8891 -2.1324 51 1 2.0809 1.5640 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980378030.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:39 Heat of formation + Delta-G solvation = -0.797470 kcal Electronic energy + Delta-G solvation = -27417.716790 eV Core-core repulsion = 23702.943532 eV Total energy + Delta-G solvation = -3714.773258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.03430 -39.50991 -37.50619 -35.32905 -34.79089 -32.70394 -31.61727 -31.13883 -29.78366 -29.18361 -27.77010 -26.07433 -25.24855 -23.50788 -22.94991 -22.46387 -22.27541 -20.62648 -19.25046 -18.86769 -17.09786 -17.03465 -16.21000 -16.14884 -15.79710 -15.36341 -15.06665 -14.96210 -14.35744 -14.04065 -13.95579 -13.63509 -13.47332 -13.41285 -13.24768 -13.10011 -12.76145 -12.52320 -12.29212 -12.19266 -11.99065 -11.82945 -11.71161 -11.64854 -11.49023 -11.21860 -11.02622 -10.95114 -10.92127 -10.81801 -10.56726 -10.43430 -10.26419 -9.89248 -9.81490 -9.59150 -9.13099 -8.70178 -8.58626 -8.27811 -6.87022 -5.76632 -3.21325 1.09906 1.19441 2.88177 3.24377 3.36231 3.43235 3.45264 3.54817 4.40052 4.45453 4.51188 4.55650 4.77733 4.79530 4.92114 4.98857 4.99372 5.03846 5.05455 5.17902 5.25142 5.27401 5.31800 5.33668 5.46773 5.52203 5.52932 5.59458 5.61353 5.70549 5.76539 5.81950 5.85842 5.89182 5.92059 5.99498 6.07556 6.21722 6.33273 6.36812 6.38197 6.47565 6.54212 6.68169 6.80320 6.82744 6.86349 7.37390 7.69994 7.78918 7.85345 8.31996 8.43700 9.17903 9.80715 10.27911 11.28056 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.036435 B = 0.001816 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.313057 B =15419.014784 C =15517.557911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.116 4.116 5 C -0.113 4.113 6 C -0.082 4.082 7 C -0.066 4.066 8 C -0.128 4.128 9 C 0.521 3.479 10 O -0.547 6.547 11 N -0.614 5.614 12 C 0.101 3.899 13 C -0.154 4.154 14 C 0.173 3.827 15 H 0.078 0.922 16 N -0.587 5.587 17 C 0.161 3.839 18 C -0.259 4.259 19 H 0.073 0.927 20 C 0.002 3.998 21 N -0.906 5.906 22 Si 0.907 3.093 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.086 3.914 27 C -0.113 4.113 28 C -0.117 4.117 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.029 0.971 45 H 0.001 0.999 46 H 0.048 0.952 47 H 0.253 0.747 48 H 0.072 0.928 49 H 0.058 0.942 50 H 0.122 0.878 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.546 -23.810 -3.987 28.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.134 4.134 5 C -0.131 4.131 6 C -0.082 4.082 7 C -0.103 4.103 8 C -0.168 4.168 9 C 0.309 3.691 10 O -0.426 6.426 11 N -0.348 5.348 12 C -0.022 4.022 13 C -0.194 4.194 14 C 0.062 3.938 15 H 0.096 0.904 16 N -0.308 5.308 17 C 0.017 3.983 18 C -0.389 4.389 19 H 0.091 0.909 20 C -0.197 4.197 21 N -0.551 5.551 22 Si 0.737 3.263 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.216 1.216 26 C -0.039 4.039 27 C -0.131 4.131 28 C -0.135 4.135 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.047 0.953 45 H 0.019 0.981 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.090 0.910 49 H 0.077 0.923 50 H 0.140 0.860 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.990 -23.138 -3.856 27.837 hybrid contribution 0.801 0.653 -0.171 1.047 sum -14.188 -22.485 -4.027 26.890 Atomic orbital electron populations 1.21750 0.94780 1.01622 1.02262 1.20533 0.96147 0.92780 1.02745 1.19883 0.99603 0.96236 0.93280 1.21005 1.00073 0.94896 0.97457 1.21087 0.99463 0.94752 0.97768 1.19939 0.99008 0.96094 0.93192 1.20346 0.93448 0.91979 1.04573 1.21606 0.96489 0.94362 1.04323 1.20303 0.80889 0.91308 0.76578 1.90697 1.54418 1.46776 1.50661 1.48604 1.04726 1.09230 1.72218 1.22318 0.88046 0.91360 1.00475 1.23345 0.96053 0.98202 1.01760 1.21338 0.89011 0.88539 0.94896 0.90407 1.43969 1.45090 1.37491 1.04218 1.20826 0.99688 0.94333 0.83445 1.19309 1.13507 0.99345 1.06693 0.90950 1.24996 0.99082 0.96660 0.98928 1.70117 1.37109 1.23541 1.24328 0.86140 0.82532 0.79833 0.77754 1.20293 1.21722 1.21595 1.22920 0.95893 0.83053 1.02040 1.21073 0.99578 0.94737 0.97718 1.20999 1.00164 0.94869 0.97438 0.92550 0.92571 0.92470 0.91140 0.91127 0.86269 0.85976 0.90140 0.90187 0.89107 0.89068 0.91363 0.91657 0.90398 0.90360 0.95265 0.98084 0.93319 0.93684 0.91010 0.92316 0.86027 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.89 37.16 0.37 -0.45 16 2 C -0.08 -0.52 6.06 -27.88 -0.17 -0.69 16 3 C -0.09 -0.73 5.13 -104.62 -0.54 -1.27 16 4 C -0.12 -0.99 9.70 -39.58 -0.38 -1.37 16 5 C -0.11 -1.05 9.70 -39.58 -0.38 -1.43 16 6 C -0.08 -0.81 5.13 -104.63 -0.54 -1.35 16 7 C -0.07 -0.73 4.64 -27.88 -0.13 -0.85 16 8 C -0.13 -1.43 4.69 -27.88 -0.13 -1.56 16 9 C 0.52 8.33 7.85 -10.99 -0.09 8.25 16 10 O -0.55 -10.95 16.31 5.56 0.09 -10.86 16 11 N -0.61 -9.92 3.33 -170.52 -0.57 -10.48 16 12 C 0.10 1.30 6.69 -2.53 -0.02 1.28 16 13 C -0.15 -2.37 6.59 -24.58 -0.16 -2.53 16 14 C 0.17 3.37 3.44 -66.10 -0.23 3.15 16 15 H 0.08 1.49 7.90 -51.93 -0.41 1.08 16 16 N -0.59 -14.26 2.94 -171.39 -0.50 -14.77 16 17 C 0.16 3.92 7.79 59.85 0.47 4.39 16 18 C -0.26 -6.94 9.67 -15.06 -0.15 -7.08 16 19 H 0.07 1.87 7.80 -52.49 -0.41 1.47 16 20 C 0.00 0.05 5.11 -17.43 -0.09 -0.04 16 21 N -0.91 -26.25 10.50 55.49 0.58 -25.67 16 22 Si 0.91 21.58 29.57 -169.99 -5.03 16.55 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.09 1.67 6.51 -3.06 -0.02 1.65 16 27 C -0.11 -1.03 9.70 -39.58 -0.38 -1.42 16 28 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 33 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 37 H 0.08 0.93 8.04 -51.93 -0.42 0.52 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.09 0.91 7.85 -51.93 -0.41 0.50 16 40 H 0.07 0.72 7.48 -51.93 -0.39 0.33 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.08 1.30 6.05 -51.93 -0.31 0.98 16 44 H 0.03 0.78 7.38 -51.93 -0.38 0.40 16 45 H 0.00 0.02 6.03 -51.93 -0.31 -0.30 16 46 H 0.05 1.27 7.08 -51.93 -0.37 0.91 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 48 H 0.07 1.62 7.13 -51.93 -0.37 1.25 16 49 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 50 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 51 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 406.46 15.07 6.13 6.13 Total: -1.00 -31.73 406.46 -11.08 -42.80 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -8.83 Total: -0.99 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -2.95 Total: -2.71 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.49 Total: -50.92 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.73 -11.08 -42.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980378030.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.005 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds