Wall clock time and date at job start Tue Mar 31 2020 16:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46843 * 2 1 4 4 C 1.38237 * 120.00147 * 89.99914 * 3 2 1 5 5 C 1.38234 * 120.00111 * 180.02562 * 4 3 2 6 6 C 1.38233 * 120.00057 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00418 * 179.97438 * 6 5 4 8 8 C 1.53008 * 109.47032 * 89.99195 * 7 6 5 9 9 C 1.50699 * 109.46911 * 180.02562 * 8 7 6 10 10 O 1.21276 * 120.00093 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99910 * 180.02562 * 9 8 7 12 12 C 1.47427 * 125.64728 * 0.04329 * 11 9 8 13 13 C 1.54914 * 104.83164 * 204.09041 * 12 11 9 14 14 C 1.55157 * 101.58199 * 322.99100 * 13 12 11 15 15 H 1.09004 * 110.87300 * 277.07076 * 14 13 12 16 16 N 1.46491 * 110.71951 * 153.86443 * 14 13 12 17 17 C 1.46506 * 120.00004 * 306.47832 * 16 14 13 18 18 C 1.36939 * 120.00001 * 126.47795 * 16 14 13 19 19 H 1.07994 * 119.99969 * 341.16768 * 18 16 14 20 20 C 1.38813 * 120.00045 * 160.89892 * 18 16 14 21 21 N 1.31620 * 119.99639 * 346.72914 * 20 18 16 22 22 Si 1.86797 * 120.00161 * 166.73450 * 20 18 16 23 23 H 1.48496 * 109.47108 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47036 * 119.99578 * 22 20 18 25 25 H 1.48492 * 109.47148 * 239.99578 * 22 20 18 26 26 C 1.47023 * 125.64985 * 179.97438 * 11 9 8 27 27 C 1.38234 * 119.99890 * 0.24049 * 6 5 4 28 28 C 1.38237 * 120.00192 * 359.49966 * 27 6 5 29 29 H 1.08997 * 109.47115 * 299.99762 * 1 2 3 30 30 H 1.09000 * 109.47364 * 59.99925 * 1 2 3 31 31 H 1.09000 * 109.46886 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47115 * 240.00237 * 2 1 3 33 33 H 1.08993 * 109.47233 * 119.99738 * 2 1 3 34 34 H 1.08000 * 119.99598 * 0.02562 * 4 3 2 35 35 H 1.08004 * 120.00030 * 179.97438 * 5 4 3 36 36 H 1.08998 * 109.46833 * 330.00297 * 7 6 5 37 37 H 1.08992 * 109.47825 * 209.99397 * 7 6 5 38 38 H 1.09001 * 109.46617 * 60.00371 * 8 7 6 39 39 H 1.09000 * 109.47118 * 300.00091 * 8 7 6 40 40 H 1.08998 * 110.36740 * 322.93326 * 12 11 9 41 41 H 1.08998 * 110.36664 * 85.14433 * 12 11 9 42 42 H 1.08996 * 111.00452 * 204.91540 * 13 12 11 43 43 H 1.08997 * 111.00290 * 81.06816 * 13 12 11 44 44 H 1.08999 * 109.46704 * 264.81312 * 17 16 14 45 45 H 1.08995 * 109.47147 * 24.81395 * 17 16 14 46 46 H 1.08999 * 109.47110 * 144.81494 * 17 16 14 47 47 H 0.97005 * 119.99401 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.87916 * 59.56068 * 26 11 9 49 49 H 1.08996 * 110.01288 * 298.46754 * 26 11 9 50 50 H 1.08001 * 120.00073 * 179.73045 * 27 6 5 51 51 H 1.08001 * 120.00454 * 180.22546 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2626 2.0726 1.1972 5 6 2.7228 3.3760 1.1971 6 6 2.9522 4.0280 0.0000 7 6 3.4534 5.4493 -0.0001 8 6 4.9835 5.4505 -0.0006 9 6 5.4846 6.8717 0.0000 10 8 4.6957 7.7929 0.0011 11 7 6.8094 7.1191 -0.0008 12 6 7.8739 6.0991 -0.0031 13 6 9.1066 6.8110 0.6080 14 6 8.9613 8.2414 0.0246 15 1 9.3742 8.2937 -0.9828 16 7 9.6049 9.2254 0.8984 17 6 9.2525 9.2849 2.3191 18 6 10.5361 10.0896 0.3871 19 1 11.0203 9.8677 -0.5523 20 6 10.8535 11.2535 1.0737 21 7 10.0905 11.6613 2.0656 22 14 12.3635 12.2411 0.5898 23 1 13.0477 11.5742 -0.5470 24 1 11.9515 13.6095 0.1863 25 1 13.2919 12.3242 1.7458 26 6 7.4325 8.4508 -0.0010 27 6 2.7166 3.3782 -1.1971 28 6 2.2615 2.0729 -1.1972 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0830 1.5633 2.1324 35 1 2.9024 3.8853 2.1325 36 1 3.0900 5.9627 0.8901 37 1 3.0894 5.9629 -0.8898 38 1 5.3469 4.9370 -0.8907 39 1 5.3475 4.9369 0.8893 40 1 7.5843 5.2471 0.6119 41 1 8.0871 5.7756 -1.0219 42 1 10.0330 6.3447 0.2730 43 1 9.0497 6.8253 1.6964 44 1 8.4839 10.0427 2.4713 45 1 8.8746 8.3144 2.6407 46 1 10.1367 9.5419 2.9024 47 1 10.3122 12.4749 2.5451 48 1 7.1198 9.0064 0.8831 49 1 7.1478 8.9957 -0.9010 50 1 2.8917 3.8891 -2.1324 51 1 2.0809 1.5640 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980378030.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:38 Heat of formation + Delta-G solvation = -16.694972 kcal Electronic energy + Delta-G solvation = -27418.406157 eV Core-core repulsion = 23702.943532 eV Total energy + Delta-G solvation = -3715.462625 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.17760 -40.34867 -38.96728 -36.56378 -36.01738 -33.67208 -33.20699 -31.76786 -31.27869 -30.13309 -29.05518 -28.09402 -26.23870 -24.81142 -23.86109 -23.58168 -23.15314 -21.28744 -20.86632 -20.09353 -18.97283 -18.22221 -17.52481 -16.93908 -16.80491 -16.60061 -16.32989 -15.91311 -15.70462 -15.06116 -15.04426 -14.67240 -14.52607 -14.45459 -14.33211 -14.12734 -13.98658 -13.74489 -13.68412 -13.30545 -13.18275 -13.08812 -12.78788 -12.68103 -12.52154 -12.39828 -12.35321 -12.29445 -12.18673 -12.06437 -11.87133 -11.78395 -11.63194 -11.58878 -11.40965 -10.92536 -10.65284 -9.77302 -9.64283 -9.37020 -8.87436 -7.84503 -5.31442 0.43887 0.55243 1.47082 1.48012 1.58787 1.62904 2.00609 2.50948 2.87073 3.27935 3.48231 3.58378 3.84171 3.90029 3.91203 4.02999 4.06751 4.13593 4.20784 4.27805 4.32613 4.37163 4.39432 4.47110 4.54785 4.58379 4.65012 4.67390 4.72394 4.75779 4.79579 4.90203 4.94652 5.05166 5.09797 5.10667 5.11977 5.20884 5.22966 5.27502 5.28233 5.33332 5.41294 5.44072 5.57766 5.62487 5.70822 5.77748 5.78809 6.17235 6.28528 6.59933 7.11058 7.16426 7.83180 8.26347 9.19249 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.036435 B = 0.001816 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.313057 B =15419.014784 C =15517.557911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.124 4.124 5 C -0.122 4.122 6 C -0.093 4.093 7 C -0.059 4.059 8 C -0.112 4.112 9 C 0.515 3.485 10 O -0.597 6.597 11 N -0.615 5.615 12 C 0.106 3.894 13 C -0.141 4.141 14 C 0.165 3.835 15 H 0.083 0.917 16 N -0.603 5.603 17 C 0.182 3.818 18 C -0.263 4.263 19 H 0.082 0.918 20 C -0.058 4.058 21 N -0.943 5.943 22 Si 0.973 3.027 23 H -0.261 1.261 24 H -0.297 1.297 25 H -0.292 1.292 26 C 0.097 3.903 27 C -0.120 4.120 28 C -0.123 4.123 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.067 0.933 44 H -0.008 1.008 45 H 0.031 0.969 46 H 0.023 0.977 47 H 0.247 0.753 48 H 0.031 0.969 49 H 0.041 0.959 50 H 0.130 0.870 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.092 -27.584 -5.223 31.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.141 4.141 5 C -0.140 4.140 6 C -0.093 4.093 7 C -0.097 4.097 8 C -0.152 4.152 9 C 0.306 3.694 10 O -0.479 6.479 11 N -0.348 5.348 12 C -0.016 4.016 13 C -0.180 4.180 14 C 0.056 3.944 15 H 0.102 0.898 16 N -0.324 5.324 17 C 0.037 3.963 18 C -0.393 4.393 19 H 0.100 0.900 20 C -0.252 4.252 21 N -0.590 5.590 22 Si 0.801 3.199 23 H -0.185 1.185 24 H -0.225 1.225 25 H -0.218 1.218 26 C -0.029 4.029 27 C -0.138 4.138 28 C -0.141 4.141 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.152 0.848 35 H 0.144 0.856 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.085 0.915 44 H 0.010 0.990 45 H 0.050 0.950 46 H 0.041 0.959 47 H 0.056 0.944 48 H 0.050 0.950 49 H 0.059 0.941 50 H 0.148 0.852 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.528 -26.985 -5.123 31.073 hybrid contribution 0.565 1.760 0.173 1.856 sum -13.963 -25.225 -4.951 29.254 Atomic orbital electron populations 1.21740 0.94499 1.02303 1.01763 1.20578 0.96296 0.91615 1.03612 1.20187 0.98792 0.97201 0.93091 1.21233 0.99815 0.94695 0.98399 1.21224 0.99732 0.95278 0.97811 1.19821 1.00296 0.95303 0.93871 1.20219 0.93523 0.92767 1.03228 1.21606 0.96314 0.90759 1.06489 1.21253 0.80224 0.92892 0.75054 1.90677 1.55668 1.48793 1.52748 1.48694 1.05687 1.08442 1.72010 1.22569 0.85375 0.90851 1.02797 1.23223 0.98678 0.95157 1.00985 1.21576 0.88161 0.89840 0.94826 0.89850 1.44166 1.45468 1.38135 1.04661 1.20463 0.97316 0.94665 0.83862 1.19729 1.13574 0.99368 1.06615 0.90038 1.25812 1.01908 0.98108 0.99415 1.70304 1.38904 1.23955 1.25868 0.85110 0.79184 0.77908 0.77672 1.18488 1.22458 1.21843 1.22474 0.96375 0.84815 0.99282 1.21230 0.99617 0.95211 0.97776 1.21246 0.99771 0.94678 0.98361 0.93110 0.93019 0.91232 0.90224 0.90347 0.84825 0.85573 0.91780 0.91403 0.86435 0.86899 0.87723 0.88677 0.88046 0.91480 0.98999 0.95043 0.95865 0.94379 0.95049 0.94079 0.85249 0.84641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 71.98 0.71 -0.61 16 2 C -0.08 -0.80 6.06 29.85 0.18 -0.62 16 3 C -0.09 -1.29 5.13 -19.86 -0.10 -1.40 16 4 C -0.12 -1.84 9.70 22.27 0.22 -1.63 16 5 C -0.12 -2.09 9.70 22.27 0.22 -1.87 16 6 C -0.09 -1.69 5.13 -19.87 -0.10 -1.79 16 7 C -0.06 -1.27 4.64 29.85 0.14 -1.13 16 8 C -0.11 -2.24 4.69 29.85 0.14 -2.10 16 9 C 0.51 16.03 7.85 87.66 0.69 16.72 16 10 O -0.60 -24.59 16.31 -3.02 -0.05 -24.64 16 11 N -0.62 -18.98 3.33 -811.79 -2.70 -21.68 16 12 C 0.11 2.27 6.69 86.86 0.58 2.85 16 13 C -0.14 -3.93 6.59 31.99 0.21 -3.72 16 14 C 0.16 6.31 3.44 46.18 0.16 6.46 16 15 H 0.08 3.09 7.90 -2.38 -0.02 3.07 16 16 N -0.60 -29.64 2.94 -696.16 -2.04 -31.69 16 17 C 0.18 9.13 7.79 127.77 1.00 10.13 16 18 C -0.26 -14.16 9.67 84.03 0.81 -13.35 16 19 H 0.08 4.15 7.80 -2.91 -0.02 4.13 16 20 C -0.06 -3.25 5.11 84.86 0.43 -2.81 16 21 N -0.94 -56.82 10.50 21.65 0.23 -56.59 16 22 Si 0.97 44.97 29.57 68.60 2.03 47.00 16 23 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 24 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 26 C 0.10 3.85 6.51 86.73 0.56 4.41 16 27 C -0.12 -1.97 9.70 22.27 0.22 -1.75 16 28 C -0.12 -1.77 9.70 22.27 0.22 -1.55 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.08 0.63 8.09 -2.39 -0.02 0.61 16 33 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 34 H 0.13 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.06 1.55 8.04 -2.39 -0.02 1.53 16 37 H 0.07 1.58 8.04 -2.39 -0.02 1.56 16 38 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.11 1.82 7.85 -2.39 -0.02 1.81 16 40 H 0.10 1.60 7.48 -2.39 -0.02 1.58 16 41 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.07 2.05 6.05 -2.39 -0.01 2.03 16 44 H -0.01 -0.48 7.38 -2.39 -0.02 -0.50 16 45 H 0.03 1.35 6.03 -2.39 -0.01 1.33 16 46 H 0.02 1.24 7.08 -2.39 -0.02 1.23 16 47 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 48 H 0.03 1.49 7.13 -2.39 -0.02 1.48 16 49 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.13 1.83 8.06 -2.91 -0.02 1.80 16 51 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -72.79 406.46 4.62 -68.16 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.88 Total: 13.19 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 6.28 Total: 6.24 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -4.52 Total: -109.96 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.05 Total: -24.64 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -72.79 4.62 -68.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980378030.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.469 kcal (2) G-P(sol) polarization free energy of solvation -72.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds