Wall clock time and date at job start Tue Mar 31 2020 16:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.47062 * 2 1 4 4 C 1.38382 * 119.85303 * 265.00498 * 3 2 1 5 5 C 1.37945 * 120.14140 * 179.97438 * 4 3 2 6 6 C 1.39591 * 119.85440 * 0.02562 * 5 4 3 7 7 C 1.47846 * 120.14519 * 179.97438 * 6 5 4 8 8 O 1.21546 * 119.99955 * 172.56069 * 7 6 5 9 9 N 1.34772 * 119.99778 * 352.56403 * 7 6 5 10 10 C 1.47473 * 125.63056 * 185.87915 * 9 7 6 11 11 C 1.54904 * 104.81443 * 204.13961 * 10 9 7 12 12 C 1.55154 * 101.61591 * 323.04252 * 11 10 9 13 13 H 1.09000 * 110.72232 * 276.94363 * 12 11 10 14 14 N 1.46505 * 110.72318 * 153.84744 * 12 11 10 15 15 C 1.46502 * 119.99628 * 299.99964 * 14 12 11 16 16 C 1.36929 * 120.00228 * 119.99609 * 14 12 11 17 17 H 1.08000 * 120.00509 * 314.98655 * 16 14 12 18 18 C 1.38815 * 120.00032 * 134.98733 * 16 14 12 19 19 N 1.31620 * 120.00437 * 182.15557 * 18 16 14 20 20 Si 1.86801 * 119.99962 * 2.15835 * 18 16 14 21 21 H 1.48499 * 109.47338 * 85.64741 * 20 18 16 22 22 H 1.48497 * 109.47385 * 205.65403 * 20 18 16 23 23 H 1.48506 * 109.46950 * 325.64763 * 20 18 16 24 24 C 1.47026 * 125.65220 * 5.96329 * 9 7 6 25 25 C 1.39556 * 119.71322 * 0.25978 * 6 5 4 26 26 C 1.37984 * 119.85167 * 359.46102 * 25 6 5 27 27 C 1.50699 * 119.92916 * 180.27562 * 26 25 6 28 28 C 1.52990 * 109.47365 * 265.25865 * 27 26 25 29 29 H 1.09002 * 109.46829 * 299.99685 * 1 2 3 30 30 H 1.08996 * 109.47189 * 59.99627 * 1 2 3 31 31 H 1.08996 * 109.46909 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47178 * 240.00725 * 2 1 3 33 33 H 1.08993 * 109.47625 * 120.00122 * 2 1 3 34 34 H 1.07999 * 119.93332 * 359.97438 * 4 3 2 35 35 H 1.08001 * 120.06775 * 180.02562 * 5 4 3 36 36 H 1.08995 * 110.34684 * 85.31613 * 10 9 7 37 37 H 1.09004 * 110.39990 * 322.98425 * 10 9 7 38 38 H 1.09002 * 111.00671 * 204.94999 * 11 10 9 39 39 H 1.09008 * 111.00332 * 81.13322 * 11 10 9 40 40 H 1.09003 * 109.47184 * 84.70252 * 15 14 12 41 41 H 1.08998 * 109.47018 * 204.69951 * 15 14 12 42 42 H 1.09003 * 109.47155 * 324.70109 * 15 14 12 43 43 H 0.96999 * 120.00503 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.88416 * 59.48511 * 24 9 7 45 45 H 1.09000 * 109.87779 * 298.32180 * 24 9 7 46 46 H 1.07997 * 120.07588 * 179.74869 * 25 6 5 47 47 H 1.09000 * 109.47165 * 25.26495 * 27 26 25 48 48 H 1.09003 * 109.46891 * 145.26016 * 27 26 25 49 49 H 1.08996 * 109.47437 * 179.97438 * 28 27 26 50 50 H 1.09000 * 109.47493 * 300.00428 * 28 27 26 51 51 H 1.09003 * 109.46993 * 60.00212 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3605 2.0355 -1.1956 5 6 2.8204 3.3360 -1.2026 6 6 2.9549 4.0319 0.0000 7 6 3.4477 5.4258 0.0000 8 8 3.4366 6.0743 1.0280 9 7 3.9092 5.9774 -1.1398 10 6 4.5397 7.3053 -1.2577 11 6 4.3168 7.7199 -2.7335 12 6 4.4793 6.3625 -3.4672 13 1 5.5324 6.1426 -3.6428 14 7 3.7345 6.3628 -4.7289 15 6 2.2840 6.5679 -4.7230 16 6 4.3942 6.1713 -5.9134 17 1 5.3185 6.6951 -6.1077 18 6 3.8749 5.3039 -6.8647 19 7 4.5303 5.0873 -7.9854 20 14 2.2458 4.4442 -6.5544 21 1 1.1307 5.3283 -6.9788 22 1 2.1977 3.1794 -7.3310 23 1 2.1138 4.1413 -5.1066 24 6 3.8660 5.3557 -2.4714 25 6 2.6279 3.4042 1.2027 26 6 2.1636 2.1048 1.1953 27 6 1.8041 1.4274 2.4926 28 6 3.0010 0.6169 2.9935 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5137 -0.8901 33 1 1.8935 -0.5138 0.8899 34 1 2.2564 1.4958 -2.1253 35 1 3.0757 3.8146 -2.1365 36 1 5.6054 7.2397 -1.0388 37 1 4.0568 8.0161 -0.5870 38 1 5.0751 8.4326 -3.0579 39 1 3.3153 8.1250 -2.8786 40 1 2.0682 7.6363 -4.7109 41 1 1.8500 6.1198 -5.6168 42 1 1.8544 6.1004 -3.8369 43 1 4.1672 4.4815 -8.6503 44 1 2.8333 5.1430 -2.7479 45 1 4.4486 4.4345 -2.4695 46 1 2.7337 3.9357 2.1369 47 1 1.5392 2.1807 3.2346 48 1 0.9560 0.7617 2.3320 49 1 2.7411 0.1273 3.9320 50 1 3.2659 -0.1364 2.2515 51 1 3.8490 1.2826 3.1541 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980573671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:45 Heat of formation + Delta-G solvation = 32.422953 kcal Electronic energy + Delta-G solvation = -29198.489995 eV Core-core repulsion = 25485.157283 eV Total energy + Delta-G solvation = -3713.332712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.60211 -39.22333 -37.59157 -35.07962 -34.79630 -33.60402 -31.89555 -30.89378 -30.03556 -29.15016 -28.14962 -26.39810 -25.21037 -24.03944 -23.70724 -22.31863 -21.67609 -20.87063 -19.67625 -19.44407 -17.22259 -16.92235 -16.35746 -16.02886 -15.86211 -15.45595 -15.25057 -14.57025 -14.22855 -13.98776 -13.83408 -13.81126 -13.55049 -13.52428 -13.38828 -13.07826 -12.92952 -12.62328 -12.54452 -12.43252 -12.15714 -11.97187 -11.84174 -11.77515 -11.64165 -11.50827 -11.29971 -11.08346 -10.94162 -10.86408 -10.69003 -10.44240 -10.19806 -9.94651 -9.74192 -9.50853 -8.90658 -8.68639 -8.68147 -8.41121 -6.89364 -6.07261 -3.69972 0.85481 1.33438 2.90044 3.10670 3.20333 3.29913 3.37625 3.82611 4.35897 4.44446 4.51643 4.65366 4.73827 4.79002 4.90209 4.96394 5.05685 5.09224 5.14818 5.18413 5.22109 5.26938 5.34708 5.41315 5.43417 5.46633 5.55690 5.60097 5.64118 5.68685 5.70577 5.78772 5.82709 5.89113 5.92169 5.99794 6.01460 6.09080 6.09532 6.21571 6.24824 6.32308 6.35283 6.46167 6.48826 6.53896 6.55211 6.71780 6.88583 7.65602 7.99202 8.26390 8.29528 8.80201 9.53937 9.95377 11.04860 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012042 B = 0.003895 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.697571 B = 7187.493130 C = 8988.585148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.058 4.058 4 C -0.124 4.124 5 C -0.121 4.121 6 C -0.132 4.132 7 C 0.572 3.428 8 O -0.551 6.551 9 N -0.607 5.607 10 C 0.108 3.892 11 C -0.152 4.152 12 C 0.174 3.826 13 H 0.093 0.907 14 N -0.599 5.599 15 C 0.103 3.897 16 C -0.279 4.279 17 H 0.082 0.918 18 C 0.037 3.963 19 N -0.904 5.904 20 Si 0.911 3.089 21 H -0.286 1.286 22 H -0.306 1.306 23 H -0.273 1.273 24 C 0.063 3.937 25 C -0.057 4.057 26 C -0.095 4.095 27 C -0.086 4.086 28 C -0.148 4.148 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.166 0.834 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.019 0.981 41 H 0.043 0.957 42 H 0.032 0.968 43 H 0.265 0.735 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.132 0.868 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.057 0.943 50 H 0.057 0.943 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.367 -8.310 17.768 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 C -0.058 4.058 4 C -0.142 4.142 5 C -0.139 4.139 6 C -0.135 4.135 7 C 0.362 3.638 8 O -0.430 6.430 9 N -0.340 5.340 10 C -0.014 4.014 11 C -0.192 4.192 12 C 0.064 3.936 13 H 0.111 0.889 14 N -0.321 5.321 15 C -0.041 4.041 16 C -0.407 4.407 17 H 0.099 0.901 18 C -0.165 4.165 19 N -0.545 5.545 20 Si 0.744 3.256 21 H -0.215 1.215 22 H -0.235 1.235 23 H -0.198 1.198 24 C -0.061 4.061 25 C -0.076 4.076 26 C -0.095 4.095 27 C -0.123 4.123 28 C -0.205 4.205 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.145 0.855 35 H 0.182 0.818 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.037 0.963 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.149 0.851 47 H 0.090 0.910 48 H 0.094 0.906 49 H 0.076 0.924 50 H 0.076 0.924 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.387 -8.085 18.159 20.595 hybrid contribution -0.976 -0.449 -0.164 1.087 sum -6.363 -8.534 17.995 20.908 Atomic orbital electron populations 1.21763 0.94587 1.01740 1.02420 1.20662 0.96344 0.92697 1.03151 1.19962 0.97180 0.95996 0.92672 1.21079 1.00274 0.95170 0.97647 1.22963 0.96151 0.94921 0.99859 1.19832 1.05061 0.94102 0.94466 1.17984 0.77353 0.86241 0.82210 1.90723 1.57084 1.63412 1.31831 1.48375 1.59146 1.18989 1.07466 1.22257 0.97421 0.83780 0.97966 1.23339 1.02911 1.00047 0.92906 1.21578 0.96731 0.90534 0.84720 0.88903 1.43934 1.02293 1.83990 1.01929 1.21458 0.85957 0.98150 0.98539 1.18786 1.08474 1.21532 0.91943 0.90056 1.25623 0.98440 0.95642 0.96774 1.69752 1.38515 1.37655 1.08569 0.86529 0.83632 0.77724 0.77702 1.21471 1.23457 1.19835 1.23367 1.02109 0.98462 0.82167 1.21066 0.95453 0.93628 0.97482 1.19633 1.01092 0.94012 0.94805 1.20572 0.98719 0.99273 0.93710 1.21773 0.98014 1.00030 1.00723 0.92424 0.92359 0.92316 0.90850 0.90510 0.85529 0.81778 0.91422 0.90761 0.89937 0.90798 0.96273 0.93940 0.94954 0.92453 0.90106 0.90545 0.85063 0.91021 0.90620 0.92413 0.92440 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.72 37.16 0.36 -0.82 16 2 C -0.09 -0.80 5.38 -27.88 -0.15 -0.95 16 3 C -0.06 -0.66 5.14 -104.53 -0.54 -1.20 16 4 C -0.12 -1.59 9.66 -39.64 -0.38 -1.98 16 5 C -0.12 -1.77 8.61 -39.18 -0.34 -2.11 16 6 C -0.13 -2.02 5.87 -104.97 -0.62 -2.64 16 7 C 0.57 9.81 7.81 -12.33 -0.10 9.71 16 8 O -0.55 -10.68 16.60 5.33 0.09 -10.59 16 9 N -0.61 -9.80 3.33 -175.39 -0.58 -10.38 16 10 C 0.11 1.58 6.94 -2.51 -0.02 1.57 16 11 C -0.15 -2.33 6.65 -24.59 -0.16 -2.49 16 12 C 0.17 3.11 3.45 -66.10 -0.23 2.89 16 13 H 0.09 1.69 7.95 -51.93 -0.41 1.28 16 14 N -0.60 -13.06 2.56 -171.39 -0.44 -13.49 16 15 C 0.10 2.10 7.89 59.85 0.47 2.57 16 16 C -0.28 -7.29 9.97 -15.06 -0.15 -7.44 16 17 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 18 C 0.04 1.00 5.50 -17.43 -0.10 0.91 16 19 N -0.90 -26.47 13.97 55.49 0.78 -25.69 16 20 Si 0.91 21.46 24.56 -169.99 -4.17 17.28 16 21 H -0.29 -6.65 6.79 56.52 0.38 -6.26 16 22 H -0.31 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.27 -6.00 6.62 56.52 0.37 -5.63 16 24 C 0.06 1.04 4.46 -3.06 -0.01 1.02 16 25 C -0.06 -0.79 9.22 -39.18 -0.36 -1.15 16 26 C -0.10 -1.10 5.13 -104.68 -0.54 -1.64 16 27 C -0.09 -0.75 5.37 -27.89 -0.15 -0.90 16 28 C -0.15 -1.17 9.72 37.15 0.36 -0.80 16 29 H 0.06 0.45 6.79 -51.93 -0.35 0.10 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 33 H 0.08 0.59 5.59 -51.93 -0.29 0.30 16 34 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.17 2.51 2.76 -57.41 -0.16 2.35 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.09 7.98 -51.93 -0.41 0.67 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 1.18 7.16 -51.92 -0.37 0.81 16 40 H 0.02 0.37 7.89 -51.93 -0.41 -0.04 16 41 H 0.04 0.94 2.58 -51.93 -0.13 0.81 16 42 H 0.03 0.60 6.05 -51.93 -0.31 0.28 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.08 1.40 4.48 -51.93 -0.23 1.17 16 45 H 0.08 1.21 6.74 -51.93 -0.35 0.86 16 46 H 0.13 1.77 7.67 -52.49 -0.40 1.37 16 47 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 48 H 0.08 0.58 5.60 -51.93 -0.29 0.29 16 49 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.06 0.45 6.79 -51.93 -0.35 0.09 16 51 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 383.41 15.07 5.78 5.78 Total: -1.00 -30.33 383.41 -9.08 -39.41 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.89 Total: 3.14 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -2.64 Total: -5.45 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: -0.25 Total: -49.57 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.17 Total: 17.28 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.33 -9.08 -39.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980573671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.836 kcal (2) G-P(sol) polarization free energy of solvation -30.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds