Wall clock time and date at job start Tue Mar 31 2020 16:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.47062 * 2 1 4 4 C 1.38382 * 119.85303 * 265.00498 * 3 2 1 5 5 C 1.37945 * 120.14140 * 179.97438 * 4 3 2 6 6 C 1.39591 * 119.85440 * 0.02562 * 5 4 3 7 7 C 1.47846 * 120.14519 * 179.97438 * 6 5 4 8 8 O 1.21546 * 119.99955 * 172.56069 * 7 6 5 9 9 N 1.34772 * 119.99778 * 352.56403 * 7 6 5 10 10 C 1.47473 * 125.63056 * 185.87915 * 9 7 6 11 11 C 1.54904 * 104.81443 * 204.13961 * 10 9 7 12 12 C 1.55154 * 101.61591 * 323.04252 * 11 10 9 13 13 H 1.09000 * 110.72232 * 276.94363 * 12 11 10 14 14 N 1.46505 * 110.72318 * 153.84744 * 12 11 10 15 15 C 1.46502 * 119.99628 * 299.99964 * 14 12 11 16 16 C 1.36929 * 120.00228 * 119.99609 * 14 12 11 17 17 H 1.08000 * 120.00509 * 314.98655 * 16 14 12 18 18 C 1.38815 * 120.00032 * 134.98733 * 16 14 12 19 19 N 1.31620 * 120.00437 * 182.15557 * 18 16 14 20 20 Si 1.86801 * 119.99962 * 2.15835 * 18 16 14 21 21 H 1.48499 * 109.47338 * 85.64741 * 20 18 16 22 22 H 1.48497 * 109.47385 * 205.65403 * 20 18 16 23 23 H 1.48506 * 109.46950 * 325.64763 * 20 18 16 24 24 C 1.47026 * 125.65220 * 5.96329 * 9 7 6 25 25 C 1.39556 * 119.71322 * 0.25978 * 6 5 4 26 26 C 1.37984 * 119.85167 * 359.46102 * 25 6 5 27 27 C 1.50699 * 119.92916 * 180.27562 * 26 25 6 28 28 C 1.52990 * 109.47365 * 265.25865 * 27 26 25 29 29 H 1.09002 * 109.46829 * 299.99685 * 1 2 3 30 30 H 1.08996 * 109.47189 * 59.99627 * 1 2 3 31 31 H 1.08996 * 109.46909 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47178 * 240.00725 * 2 1 3 33 33 H 1.08993 * 109.47625 * 120.00122 * 2 1 3 34 34 H 1.07999 * 119.93332 * 359.97438 * 4 3 2 35 35 H 1.08001 * 120.06775 * 180.02562 * 5 4 3 36 36 H 1.08995 * 110.34684 * 85.31613 * 10 9 7 37 37 H 1.09004 * 110.39990 * 322.98425 * 10 9 7 38 38 H 1.09002 * 111.00671 * 204.94999 * 11 10 9 39 39 H 1.09008 * 111.00332 * 81.13322 * 11 10 9 40 40 H 1.09003 * 109.47184 * 84.70252 * 15 14 12 41 41 H 1.08998 * 109.47018 * 204.69951 * 15 14 12 42 42 H 1.09003 * 109.47155 * 324.70109 * 15 14 12 43 43 H 0.96999 * 120.00503 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.88416 * 59.48511 * 24 9 7 45 45 H 1.09000 * 109.87779 * 298.32180 * 24 9 7 46 46 H 1.07997 * 120.07588 * 179.74869 * 25 6 5 47 47 H 1.09000 * 109.47165 * 25.26495 * 27 26 25 48 48 H 1.09003 * 109.46891 * 145.26016 * 27 26 25 49 49 H 1.08996 * 109.47437 * 179.97438 * 28 27 26 50 50 H 1.09000 * 109.47493 * 300.00428 * 28 27 26 51 51 H 1.09003 * 109.46993 * 60.00212 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3605 2.0355 -1.1956 5 6 2.8204 3.3360 -1.2026 6 6 2.9549 4.0319 0.0000 7 6 3.4477 5.4258 0.0000 8 8 3.4366 6.0743 1.0280 9 7 3.9092 5.9774 -1.1398 10 6 4.5397 7.3053 -1.2577 11 6 4.3168 7.7199 -2.7335 12 6 4.4793 6.3625 -3.4672 13 1 5.5324 6.1426 -3.6428 14 7 3.7345 6.3628 -4.7289 15 6 2.2840 6.5679 -4.7230 16 6 4.3942 6.1713 -5.9134 17 1 5.3185 6.6951 -6.1077 18 6 3.8749 5.3039 -6.8647 19 7 4.5303 5.0873 -7.9854 20 14 2.2458 4.4442 -6.5544 21 1 1.1307 5.3283 -6.9788 22 1 2.1977 3.1794 -7.3310 23 1 2.1138 4.1413 -5.1066 24 6 3.8660 5.3557 -2.4714 25 6 2.6279 3.4042 1.2027 26 6 2.1636 2.1048 1.1953 27 6 1.8041 1.4274 2.4926 28 6 3.0010 0.6169 2.9935 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5137 -0.8901 33 1 1.8935 -0.5138 0.8899 34 1 2.2564 1.4958 -2.1253 35 1 3.0757 3.8146 -2.1365 36 1 5.6054 7.2397 -1.0388 37 1 4.0568 8.0161 -0.5870 38 1 5.0751 8.4326 -3.0579 39 1 3.3153 8.1250 -2.8786 40 1 2.0682 7.6363 -4.7109 41 1 1.8500 6.1198 -5.6168 42 1 1.8544 6.1004 -3.8369 43 1 4.1672 4.4815 -8.6503 44 1 2.8333 5.1430 -2.7479 45 1 4.4486 4.4345 -2.4695 46 1 2.7337 3.9357 2.1369 47 1 1.5392 2.1807 3.2346 48 1 0.9560 0.7617 2.3320 49 1 2.7411 0.1273 3.9320 50 1 3.2659 -0.1364 2.2515 51 1 3.8490 1.2826 3.1541 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980573671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:44 Heat of formation + Delta-G solvation = 16.475298 kcal Electronic energy + Delta-G solvation = -29199.181537 eV Core-core repulsion = 25485.157283 eV Total energy + Delta-G solvation = -3714.024254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.78580 -40.31677 -39.02196 -36.67394 -35.76948 -34.37029 -33.79723 -32.20186 -30.94722 -30.33827 -29.32846 -28.16218 -26.35228 -25.17411 -24.84734 -23.60572 -22.53284 -21.90352 -21.12665 -20.68139 -19.05055 -18.10710 -17.84876 -17.35546 -16.91149 -16.79807 -16.41351 -15.77455 -15.55596 -15.12573 -14.90091 -14.76851 -14.70705 -14.63458 -14.50190 -14.43272 -14.20091 -14.14011 -13.80335 -13.52777 -13.35735 -13.25539 -13.09447 -12.83652 -12.62994 -12.55340 -12.41593 -12.16074 -12.11869 -12.06906 -11.95077 -11.64477 -11.60249 -11.44101 -11.29857 -10.96884 -10.71417 -9.98028 -9.72277 -9.59437 -8.72604 -8.14943 -5.77309 -0.20851 0.33465 1.33081 1.39983 1.52670 1.71122 1.84099 2.39518 2.75335 3.05726 3.16203 3.45414 3.62915 3.73134 3.80760 3.85820 3.90673 4.10404 4.15385 4.20383 4.22447 4.35418 4.37623 4.42918 4.45422 4.48453 4.50947 4.51749 4.56671 4.70081 4.74687 4.79217 4.83646 4.89314 4.92873 4.97929 5.03304 5.05430 5.08391 5.10490 5.16388 5.22577 5.30240 5.32321 5.35898 5.44061 5.46950 5.62258 5.92354 5.96985 6.20376 6.34668 6.92009 6.98166 7.53887 7.99448 8.99227 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012042 B = 0.003895 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.697571 B = 7187.493130 C = 8988.585148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.052 4.052 4 C -0.132 4.132 5 C -0.131 4.131 6 C -0.153 4.153 7 C 0.569 3.431 8 O -0.580 6.580 9 N -0.607 5.607 10 C 0.110 3.890 11 C -0.138 4.138 12 C 0.167 3.833 13 H 0.085 0.915 14 N -0.609 5.609 15 C 0.101 3.899 16 C -0.265 4.265 17 H 0.046 0.954 18 C -0.020 4.020 19 N -0.954 5.954 20 Si 0.969 3.031 21 H -0.280 1.280 22 H -0.315 1.315 23 H -0.248 1.248 24 C 0.078 3.922 25 C -0.067 4.067 26 C -0.091 4.091 27 C -0.085 4.085 28 C -0.146 4.146 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.139 0.861 35 H 0.156 0.844 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.032 0.968 41 H 0.028 0.972 42 H 0.055 0.945 43 H 0.264 0.736 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.127 0.873 47 H 0.074 0.926 48 H 0.092 0.908 49 H 0.076 0.924 50 H 0.059 0.941 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.050 -10.016 19.938 23.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.052 4.052 4 C -0.150 4.150 5 C -0.148 4.148 6 C -0.156 4.156 7 C 0.361 3.639 8 O -0.462 6.462 9 N -0.339 5.339 10 C -0.012 4.012 11 C -0.178 4.178 12 C 0.059 3.941 13 H 0.103 0.897 14 N -0.332 5.332 15 C -0.043 4.043 16 C -0.395 4.395 17 H 0.063 0.937 18 C -0.216 4.216 19 N -0.597 5.597 20 Si 0.800 3.200 21 H -0.208 1.208 22 H -0.245 1.245 23 H -0.172 1.172 24 C -0.046 4.046 25 C -0.086 4.086 26 C -0.091 4.091 27 C -0.122 4.122 28 C -0.204 4.204 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.157 0.843 35 H 0.173 0.827 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.145 0.855 47 H 0.093 0.907 48 H 0.111 0.889 49 H 0.094 0.906 50 H 0.078 0.922 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.069 -9.768 20.368 23.670 hybrid contribution -0.392 0.122 -0.776 0.878 sum -7.461 -9.646 19.593 23.078 Atomic orbital electron populations 1.21760 0.93804 1.02818 1.02002 1.20749 0.96866 0.90810 1.04326 1.20310 0.95635 0.97272 0.91968 1.21302 1.00097 0.94664 0.98908 1.22852 0.97171 0.95746 0.99080 1.19798 1.06845 0.93437 0.95480 1.18312 0.76905 0.86886 0.81840 1.90696 1.58520 1.64299 1.32698 1.48394 1.58962 1.19370 1.07152 1.22323 0.98240 0.83265 0.97351 1.23210 1.03193 0.98621 0.92797 1.21642 0.96020 0.92654 0.83790 0.89675 1.43941 1.03003 1.84507 1.01766 1.21508 0.84802 0.99157 0.98814 1.18630 1.07230 1.20072 0.93528 0.93655 1.26321 1.02035 0.96759 0.96532 1.69900 1.40685 1.39268 1.09890 0.85568 0.79583 0.76116 0.78777 1.20789 1.24453 1.17168 1.23129 1.01755 0.97942 0.81816 1.21168 0.95965 0.94635 0.96817 1.19954 0.99690 0.93186 0.96317 1.20653 0.99662 0.99600 0.92254 1.21764 0.97111 0.99749 1.01727 0.92278 0.93379 0.90534 0.90141 0.88957 0.84296 0.82687 0.90022 0.90446 0.88827 0.91003 0.94993 0.95366 0.92683 0.92691 0.90415 0.89990 0.85479 0.90687 0.88941 0.90550 0.92153 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.72 71.98 0.70 -1.16 16 2 C -0.09 -1.27 5.38 29.85 0.16 -1.11 16 3 C -0.05 -1.05 5.14 -19.80 -0.10 -1.15 16 4 C -0.13 -3.15 9.66 22.23 0.21 -2.93 16 5 C -0.13 -3.67 8.61 22.53 0.19 -3.47 16 6 C -0.15 -4.59 5.87 -20.09 -0.12 -4.71 16 7 C 0.57 19.24 7.81 86.79 0.68 19.92 16 8 O -0.58 -22.40 16.60 -3.86 -0.06 -22.46 16 9 N -0.61 -18.97 3.33 -827.11 -2.75 -21.72 16 10 C 0.11 3.07 6.94 86.84 0.60 3.68 16 11 C -0.14 -4.04 6.65 31.98 0.21 -3.83 16 12 C 0.17 5.84 3.45 46.18 0.16 6.00 16 13 H 0.09 3.10 7.95 -2.39 -0.02 3.08 16 14 N -0.61 -26.07 2.56 -696.14 -1.78 -27.85 16 15 C 0.10 3.90 7.89 127.77 1.01 4.91 16 16 C -0.26 -14.07 9.97 84.04 0.84 -13.23 16 17 H 0.05 2.70 8.06 -2.91 -0.02 2.67 16 18 C -0.02 -1.09 5.50 84.86 0.47 -0.62 16 19 N -0.95 -57.44 13.97 21.65 0.30 -57.14 16 20 Si 0.97 43.98 24.56 68.60 1.68 45.67 16 21 H -0.28 -12.32 6.79 99.48 0.68 -11.64 16 22 H -0.31 -14.67 7.11 99.48 0.71 -13.96 16 23 H -0.25 -10.08 6.62 99.48 0.66 -9.42 16 24 C 0.08 2.46 4.46 86.73 0.39 2.84 16 25 C -0.07 -1.78 9.22 22.53 0.21 -1.57 16 26 C -0.09 -1.93 5.13 -19.90 -0.10 -2.03 16 27 C -0.08 -1.25 5.37 29.84 0.16 -1.09 16 28 C -0.15 -1.90 9.72 71.98 0.70 -1.20 16 29 H 0.06 0.73 6.79 -2.39 -0.02 0.72 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 1.06 8.05 -2.39 -0.02 1.04 16 33 H 0.09 1.05 5.59 -2.39 -0.01 1.03 16 34 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 35 H 0.16 4.55 2.76 -7.53 -0.02 4.52 16 36 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.08 2.15 7.98 -2.38 -0.02 2.14 16 38 H 0.09 2.53 8.14 -2.39 -0.02 2.52 16 39 H 0.07 2.16 7.16 -2.38 -0.02 2.14 16 40 H 0.03 1.16 7.89 -2.39 -0.02 1.14 16 41 H 0.03 1.19 2.58 -2.39 -0.01 1.19 16 42 H 0.05 1.89 6.05 -2.39 -0.01 1.87 16 43 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 44 H 0.08 2.55 4.48 -2.39 -0.01 2.54 16 45 H 0.08 2.52 6.74 -2.39 -0.02 2.51 16 46 H 0.13 3.40 7.67 -2.91 -0.02 3.38 16 47 H 0.07 1.08 8.05 -2.39 -0.02 1.06 16 48 H 0.09 1.08 5.60 -2.39 -0.01 1.07 16 49 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.06 0.75 6.79 -2.39 -0.02 0.73 16 51 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -66.48 383.41 4.60 -61.88 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.84 Total: 22.38 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 6.37 Total: -0.75 kcal Atomic # 7 Polarization: -102.48 SS G_CDS: -4.23 Total: -106.71 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.06 Total: -22.46 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.68 Total: 45.67 kcal Total: -66.48 4.60 -61.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980573671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.358 kcal (2) G-P(sol) polarization free energy of solvation -66.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds