Wall clock time and date at job start Tue Mar 31 2020 16:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47252 * 2 1 4 4 C 1.38381 * 119.85327 * 265.02302 * 3 2 1 5 5 C 1.37930 * 120.14554 * 179.72340 * 4 3 2 6 6 C 1.39597 * 119.85001 * 0.52938 * 5 4 3 7 7 C 1.47850 * 120.14575 * 179.74838 * 6 5 4 8 8 O 1.21548 * 120.00396 * 187.11009 * 7 6 5 9 9 N 1.34779 * 119.99622 * 7.11260 * 7 6 5 10 10 C 1.47425 * 125.64659 * 174.26055 * 9 7 6 11 11 C 1.54909 * 104.83438 * 155.82428 * 10 9 7 12 12 C 1.55159 * 101.57940 * 37.00441 * 11 10 9 13 13 H 1.09005 * 110.71688 * 83.04497 * 12 11 10 14 14 N 1.46500 * 110.71877 * 206.13423 * 12 11 10 15 15 C 1.46505 * 119.99939 * 60.00547 * 14 12 11 16 16 C 1.36937 * 120.00218 * 240.00096 * 14 12 11 17 17 H 1.07998 * 119.99958 * 334.67120 * 16 14 12 18 18 C 1.38815 * 119.99894 * 154.39430 * 16 14 12 19 19 N 1.31617 * 120.00344 * 354.45528 * 18 16 14 20 20 Si 1.86804 * 119.99821 * 174.45240 * 18 16 14 21 21 H 1.48504 * 109.46935 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46821 * 119.99774 * 20 18 16 23 23 H 1.48495 * 109.47081 * 239.99949 * 20 18 16 24 24 C 1.47024 * 125.65063 * 354.20074 * 9 7 6 25 25 C 1.39554 * 119.71614 * 359.46885 * 6 5 4 26 26 C 1.37982 * 119.84846 * 0.25604 * 25 6 5 27 27 C 1.50702 * 119.92710 * 179.97438 * 26 25 6 28 28 C 1.53004 * 109.47057 * 264.99803 * 27 26 25 29 29 H 1.08999 * 109.47560 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46925 * 300.00029 * 1 2 3 31 31 H 1.08994 * 109.47190 * 59.99774 * 1 2 3 32 32 H 1.08997 * 109.47108 * 239.99788 * 2 1 3 33 33 H 1.09002 * 109.47076 * 119.99861 * 2 1 3 34 34 H 1.08003 * 119.92674 * 359.97438 * 4 3 2 35 35 H 1.07993 * 120.07842 * 180.27685 * 5 4 3 36 36 H 1.09002 * 110.36944 * 36.98562 * 10 9 7 37 37 H 1.09000 * 110.45775 * 274.70653 * 10 9 7 38 38 H 1.09005 * 111.00387 * 278.93662 * 11 10 9 39 39 H 1.09000 * 111.04299 * 155.09534 * 11 10 9 40 40 H 1.08993 * 109.47032 * 274.54015 * 15 14 12 41 41 H 1.08997 * 109.47185 * 34.54368 * 15 14 12 42 42 H 1.09003 * 109.46996 * 154.53808 * 15 14 12 43 43 H 0.96998 * 120.00011 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.87753 * 61.69281 * 24 9 7 45 45 H 1.09000 * 109.88334 * 300.52730 * 24 9 7 46 46 H 1.07995 * 120.07937 * 180.27648 * 25 6 5 47 47 H 1.08995 * 109.46875 * 24.99602 * 27 26 25 48 48 H 1.08997 * 109.47010 * 145.00434 * 27 26 25 49 49 H 1.09009 * 109.47027 * 60.00177 * 28 27 26 50 50 H 1.09001 * 109.46899 * 179.97438 * 28 27 26 51 51 H 1.08998 * 109.47611 * 300.00217 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3602 2.0355 -1.1957 5 6 2.8151 3.3376 -1.2032 6 6 2.9551 4.0317 -0.0001 7 6 3.4475 5.4258 -0.0001 8 8 3.6914 5.9842 1.0516 9 7 3.6258 6.0774 -1.1663 10 6 3.9939 7.4978 -1.3093 11 6 4.6644 7.5954 -2.7023 12 6 3.8107 6.5983 -3.5295 13 1 2.8983 7.0758 -3.8868 14 7 4.5845 6.0593 -4.6506 15 6 5.8186 5.3118 -4.3966 16 6 4.1542 6.2540 -5.9360 17 1 3.1057 6.4192 -6.1353 18 6 5.0666 6.2448 -6.9822 19 7 6.3556 6.1584 -6.7306 20 14 4.4647 6.3550 -8.7472 21 1 2.9824 6.4433 -8.7601 22 1 5.0377 7.5644 -9.3909 23 1 4.8957 5.1458 -9.4935 24 6 3.4866 5.4893 -2.5066 25 6 2.6227 3.4060 1.2022 26 6 2.1633 2.1049 1.1953 27 6 1.8044 1.4273 2.4926 28 6 3.0017 0.6165 2.9927 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2557 1.4959 -2.1254 35 1 3.0664 3.8178 -2.1373 36 1 4.6972 7.7879 -0.5287 37 1 3.1050 8.1275 -1.2713 38 1 5.7055 7.2753 -2.6582 39 1 4.5852 8.6052 -3.1050 40 1 6.6519 6.0079 -4.3015 41 1 5.7145 4.7413 -3.4737 42 1 6.0076 4.6299 -5.2258 43 1 6.9930 6.1523 -7.4617 44 1 2.4654 5.1372 -2.6526 45 1 4.1864 4.6617 -2.6227 46 1 2.7245 3.9389 2.1360 47 1 1.5402 2.1805 3.2349 48 1 0.9563 0.7617 2.3324 49 1 3.8499 1.2821 3.1530 50 1 2.7422 0.1267 3.9313 51 1 3.2661 -0.1367 2.2505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980573672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:48 Heat of formation + Delta-G solvation = 25.372477 kcal Electronic energy + Delta-G solvation = -28858.921633 eV Core-core repulsion = 25145.283190 eV Total energy + Delta-G solvation = -3713.638444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.54044 -39.14919 -37.43326 -34.95912 -34.68856 -33.58405 -31.67678 -30.54913 -30.00847 -28.83836 -27.86900 -26.13909 -25.14841 -23.96731 -23.56881 -22.24929 -21.65076 -20.80150 -19.56069 -19.33153 -17.12942 -16.87371 -16.27428 -15.89272 -15.74110 -15.36126 -14.75750 -14.39839 -14.11403 -13.94221 -13.85198 -13.77324 -13.48807 -13.44736 -13.21722 -12.82662 -12.78373 -12.59160 -12.55656 -12.21572 -12.06458 -11.67246 -11.60669 -11.49792 -11.30048 -11.27561 -11.01241 -10.87727 -10.84720 -10.77629 -10.45799 -10.32525 -10.25130 -9.99255 -9.93465 -9.59887 -8.87420 -8.65428 -8.61187 -8.32448 -6.85289 -5.84441 -3.33139 0.89139 1.36445 2.95280 3.19319 3.31583 3.39294 3.40715 3.86792 4.37459 4.50573 4.58548 4.69042 4.76333 4.83223 5.07300 5.07994 5.10679 5.18948 5.20122 5.26134 5.29918 5.38110 5.43397 5.45373 5.48063 5.57656 5.59777 5.65173 5.70285 5.75892 5.79910 5.87014 5.91351 5.93479 5.95950 6.03813 6.10958 6.15507 6.33585 6.37039 6.37950 6.53015 6.56416 6.61181 6.75949 6.84653 6.91730 7.31093 7.63508 7.72999 7.75197 8.31062 8.35255 9.12985 9.73274 10.23040 11.21486 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014272 B = 0.003046 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.364706 B = 9191.070140 C =10527.825006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.059 4.059 4 C -0.123 4.123 5 C -0.121 4.121 6 C -0.130 4.130 7 C 0.571 3.429 8 O -0.552 6.552 9 N -0.605 5.605 10 C 0.107 3.893 11 C -0.151 4.151 12 C 0.170 3.830 13 H 0.081 0.919 14 N -0.586 5.586 15 C 0.158 3.842 16 C -0.261 4.261 17 H 0.071 0.929 18 C 0.006 3.994 19 N -0.906 5.906 20 Si 0.907 3.093 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.289 1.289 24 C 0.066 3.934 25 C -0.058 4.058 26 C -0.096 4.096 27 C -0.085 4.085 28 C -0.148 4.148 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.167 0.833 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.018 0.982 41 H -0.006 1.006 42 H 0.065 0.935 43 H 0.254 0.746 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.131 0.869 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.057 0.943 50 H 0.057 0.943 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.393 -10.406 14.577 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 C -0.060 4.060 4 C -0.141 4.141 5 C -0.138 4.138 6 C -0.133 4.133 7 C 0.361 3.639 8 O -0.432 6.432 9 N -0.337 5.337 10 C -0.016 4.016 11 C -0.192 4.192 12 C 0.059 3.941 13 H 0.099 0.901 14 N -0.307 5.307 15 C 0.014 3.986 16 C -0.390 4.390 17 H 0.089 0.911 18 C -0.193 4.193 19 N -0.550 5.550 20 Si 0.737 3.263 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.216 1.216 24 C -0.058 4.058 25 C -0.077 4.077 26 C -0.096 4.096 27 C -0.123 4.123 28 C -0.206 4.206 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.145 0.855 35 H 0.184 0.816 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.037 0.963 41 H 0.012 0.988 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.149 0.851 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.076 0.924 50 H 0.076 0.924 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.114 -10.161 15.028 20.302 hybrid contribution -0.084 0.172 -1.081 1.098 sum -9.199 -9.989 13.947 19.466 Atomic orbital electron populations 1.21759 0.94621 1.01694 1.02397 1.20653 0.96296 0.92749 1.03122 1.19955 0.97319 0.95963 0.92728 1.21060 1.00419 0.95078 0.97585 1.22976 0.96024 0.94929 0.99887 1.19847 1.04793 0.94223 0.94458 1.17982 0.77772 0.85689 0.82464 1.90722 1.52752 1.68994 1.30731 1.48333 1.67767 1.11977 1.05671 1.22265 0.99292 0.81232 0.98780 1.23383 1.00984 1.01643 0.93176 1.21384 0.95083 0.90286 0.87322 0.90102 1.43880 1.25350 1.60511 1.00973 1.20858 0.87261 0.94431 0.96028 1.19275 0.92217 1.45051 0.82450 0.91144 1.25121 0.95202 1.00350 0.98590 1.70056 1.00116 1.54328 1.30506 0.86143 0.78121 0.77355 0.84654 1.20228 1.21609 1.21579 1.23270 1.00875 0.99524 0.82102 1.21073 0.95493 0.93661 0.97490 1.19626 1.01191 0.93959 0.94800 1.20570 0.98690 0.99250 0.93745 1.21778 0.98052 1.00042 1.00697 0.92373 0.92452 0.92352 0.90875 0.90571 0.85504 0.81595 0.90957 0.91709 0.90623 0.90288 0.96316 0.98779 0.91620 0.93605 0.91017 0.89657 0.85115 0.91062 0.90659 0.92394 0.92443 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.72 37.16 0.36 -0.73 16 2 C -0.09 -0.75 5.38 -27.88 -0.15 -0.90 16 3 C -0.06 -0.65 5.14 -104.53 -0.54 -1.19 16 4 C -0.12 -1.49 9.66 -39.64 -0.38 -1.87 16 5 C -0.12 -1.68 8.62 -39.19 -0.34 -2.02 16 6 C -0.13 -1.99 5.87 -104.97 -0.62 -2.61 16 7 C 0.57 10.00 7.81 -12.33 -0.10 9.90 16 8 O -0.55 -11.01 16.60 5.32 0.09 -10.93 16 9 N -0.61 -10.09 3.33 -175.64 -0.58 -10.68 16 10 C 0.11 1.69 6.94 -2.53 -0.02 1.68 16 11 C -0.15 -2.62 6.66 -24.58 -0.16 -2.79 16 12 C 0.17 3.18 3.45 -66.10 -0.23 2.95 16 13 H 0.08 1.49 7.94 -51.93 -0.41 1.08 16 14 N -0.59 -13.52 2.93 -171.39 -0.50 -14.03 16 15 C 0.16 3.68 7.95 59.85 0.48 4.15 16 16 C -0.26 -6.66 9.60 -15.06 -0.14 -6.80 16 17 H 0.07 1.75 7.82 -52.49 -0.41 1.34 16 18 C 0.01 0.16 5.19 -17.43 -0.09 0.07 16 19 N -0.91 -25.15 10.53 55.49 0.58 -24.57 16 20 Si 0.91 20.83 29.56 -169.99 -5.02 15.80 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.07 1.09 4.45 -3.07 -0.01 1.08 16 25 C -0.06 -0.80 9.22 -39.18 -0.36 -1.16 16 26 C -0.10 -1.09 5.13 -104.68 -0.54 -1.63 16 27 C -0.09 -0.74 5.38 -27.88 -0.15 -0.89 16 28 C -0.15 -1.18 9.72 37.16 0.36 -0.82 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.43 6.79 -51.93 -0.35 0.07 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 33 H 0.08 0.57 5.59 -51.93 -0.29 0.28 16 34 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 35 H 0.17 2.37 2.75 -57.69 -0.16 2.21 16 36 H 0.07 1.16 7.98 -51.93 -0.41 0.74 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.44 7.18 -51.93 -0.37 1.07 16 39 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.02 0.47 7.63 -51.93 -0.40 0.07 16 41 H -0.01 -0.12 6.05 -51.93 -0.31 -0.44 16 42 H 0.07 1.67 6.64 -51.93 -0.34 1.33 16 43 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.07 1.08 6.74 -51.93 -0.35 0.73 16 45 H 0.09 1.47 4.49 -51.93 -0.23 1.24 16 46 H 0.13 1.78 7.67 -52.49 -0.40 1.38 16 47 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 48 H 0.07 0.56 5.60 -51.93 -0.29 0.27 16 49 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 50 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.06 0.45 6.79 -51.93 -0.35 0.10 16 LS Contribution 389.11 15.07 5.86 5.86 Total: -1.00 -29.68 389.11 -10.23 -39.91 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.03 Total: 2.21 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -2.63 Total: -3.59 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.50 Total: -49.27 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.68 -10.23 -39.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980573672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.286 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds