Wall clock time and date at job start Tue Mar 31 2020 16:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47252 * 2 1 4 4 C 1.38381 * 119.85327 * 265.02302 * 3 2 1 5 5 C 1.37930 * 120.14554 * 179.72340 * 4 3 2 6 6 C 1.39597 * 119.85001 * 0.52938 * 5 4 3 7 7 C 1.47850 * 120.14575 * 179.74838 * 6 5 4 8 8 O 1.21548 * 120.00396 * 187.11009 * 7 6 5 9 9 N 1.34779 * 119.99622 * 7.11260 * 7 6 5 10 10 C 1.47425 * 125.64659 * 174.26055 * 9 7 6 11 11 C 1.54909 * 104.83438 * 155.82428 * 10 9 7 12 12 C 1.55159 * 101.57940 * 37.00441 * 11 10 9 13 13 H 1.09005 * 110.71688 * 83.04497 * 12 11 10 14 14 N 1.46500 * 110.71877 * 206.13423 * 12 11 10 15 15 C 1.46505 * 119.99939 * 60.00547 * 14 12 11 16 16 C 1.36937 * 120.00218 * 240.00096 * 14 12 11 17 17 H 1.07998 * 119.99958 * 334.67120 * 16 14 12 18 18 C 1.38815 * 119.99894 * 154.39430 * 16 14 12 19 19 N 1.31617 * 120.00344 * 354.45528 * 18 16 14 20 20 Si 1.86804 * 119.99821 * 174.45240 * 18 16 14 21 21 H 1.48504 * 109.46935 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46821 * 119.99774 * 20 18 16 23 23 H 1.48495 * 109.47081 * 239.99949 * 20 18 16 24 24 C 1.47024 * 125.65063 * 354.20074 * 9 7 6 25 25 C 1.39554 * 119.71614 * 359.46885 * 6 5 4 26 26 C 1.37982 * 119.84846 * 0.25604 * 25 6 5 27 27 C 1.50702 * 119.92710 * 179.97438 * 26 25 6 28 28 C 1.53004 * 109.47057 * 264.99803 * 27 26 25 29 29 H 1.08999 * 109.47560 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46925 * 300.00029 * 1 2 3 31 31 H 1.08994 * 109.47190 * 59.99774 * 1 2 3 32 32 H 1.08997 * 109.47108 * 239.99788 * 2 1 3 33 33 H 1.09002 * 109.47076 * 119.99861 * 2 1 3 34 34 H 1.08003 * 119.92674 * 359.97438 * 4 3 2 35 35 H 1.07993 * 120.07842 * 180.27685 * 5 4 3 36 36 H 1.09002 * 110.36944 * 36.98562 * 10 9 7 37 37 H 1.09000 * 110.45775 * 274.70653 * 10 9 7 38 38 H 1.09005 * 111.00387 * 278.93662 * 11 10 9 39 39 H 1.09000 * 111.04299 * 155.09534 * 11 10 9 40 40 H 1.08993 * 109.47032 * 274.54015 * 15 14 12 41 41 H 1.08997 * 109.47185 * 34.54368 * 15 14 12 42 42 H 1.09003 * 109.46996 * 154.53808 * 15 14 12 43 43 H 0.96998 * 120.00011 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.87753 * 61.69281 * 24 9 7 45 45 H 1.09000 * 109.88334 * 300.52730 * 24 9 7 46 46 H 1.07995 * 120.07937 * 180.27648 * 25 6 5 47 47 H 1.08995 * 109.46875 * 24.99602 * 27 26 25 48 48 H 1.08997 * 109.47010 * 145.00434 * 27 26 25 49 49 H 1.09009 * 109.47027 * 60.00177 * 28 27 26 50 50 H 1.09001 * 109.46899 * 179.97438 * 28 27 26 51 51 H 1.08998 * 109.47611 * 300.00217 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3602 2.0355 -1.1957 5 6 2.8151 3.3376 -1.2032 6 6 2.9551 4.0317 -0.0001 7 6 3.4475 5.4258 -0.0001 8 8 3.6914 5.9842 1.0516 9 7 3.6258 6.0774 -1.1663 10 6 3.9939 7.4978 -1.3093 11 6 4.6644 7.5954 -2.7023 12 6 3.8107 6.5983 -3.5295 13 1 2.8983 7.0758 -3.8868 14 7 4.5845 6.0593 -4.6506 15 6 5.8186 5.3118 -4.3966 16 6 4.1542 6.2540 -5.9360 17 1 3.1057 6.4192 -6.1353 18 6 5.0666 6.2448 -6.9822 19 7 6.3556 6.1584 -6.7306 20 14 4.4647 6.3550 -8.7472 21 1 2.9824 6.4433 -8.7601 22 1 5.0377 7.5644 -9.3909 23 1 4.8957 5.1458 -9.4935 24 6 3.4866 5.4893 -2.5066 25 6 2.6227 3.4060 1.2022 26 6 2.1633 2.1049 1.1953 27 6 1.8044 1.4273 2.4926 28 6 3.0017 0.6165 2.9927 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2557 1.4959 -2.1254 35 1 3.0664 3.8178 -2.1373 36 1 4.6972 7.7879 -0.5287 37 1 3.1050 8.1275 -1.2713 38 1 5.7055 7.2753 -2.6582 39 1 4.5852 8.6052 -3.1050 40 1 6.6519 6.0079 -4.3015 41 1 5.7145 4.7413 -3.4737 42 1 6.0076 4.6299 -5.2258 43 1 6.9930 6.1523 -7.4617 44 1 2.4654 5.1372 -2.6526 45 1 4.1864 4.6617 -2.6227 46 1 2.7245 3.9389 2.1360 47 1 1.5402 2.1805 3.2349 48 1 0.9563 0.7617 2.3324 49 1 3.8499 1.2821 3.1530 50 1 2.7422 0.1267 3.9313 51 1 3.2661 -0.1367 2.2505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980573672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:47 Heat of formation + Delta-G solvation = 11.324398 kcal Electronic energy + Delta-G solvation = -28859.530804 eV Core-core repulsion = 25145.283190 eV Total energy + Delta-G solvation = -3714.247614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.74197 -40.26269 -38.91876 -36.56294 -35.73224 -34.33689 -33.40680 -31.93082 -30.90877 -30.03766 -29.20189 -28.06816 -26.23897 -25.03402 -24.81997 -23.59962 -22.49826 -21.85467 -21.05131 -20.63836 -18.93307 -18.08406 -17.58534 -17.18877 -16.85717 -16.48858 -16.30591 -15.71338 -15.32920 -15.11229 -14.94523 -14.77641 -14.64299 -14.48798 -14.44467 -14.22109 -14.17694 -13.77726 -13.51687 -13.31868 -13.13469 -12.94887 -12.82997 -12.76626 -12.53345 -12.48642 -12.29868 -12.15183 -12.09288 -12.03784 -11.97870 -11.83867 -11.61513 -11.56823 -11.33054 -10.96074 -10.59434 -9.94043 -9.68274 -9.55548 -8.76005 -7.83550 -5.33427 -0.16945 0.38233 1.49816 1.52004 1.61258 1.74573 1.87784 2.51887 2.79575 3.30190 3.32582 3.65381 3.68109 3.78981 3.85277 3.91902 3.95801 4.13494 4.21570 4.25288 4.26091 4.38251 4.43942 4.48014 4.54026 4.54568 4.56076 4.60362 4.74641 4.78210 4.85605 4.91731 4.92928 5.01624 5.05742 5.07530 5.11137 5.12105 5.18043 5.25408 5.32661 5.34846 5.37080 5.39373 5.47333 5.49976 5.65797 5.66323 5.74613 5.96763 6.33545 6.41445 6.99939 7.15901 7.83922 8.29927 9.21517 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014272 B = 0.003046 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.364706 B = 9191.070140 C =10527.825006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.053 4.053 4 C -0.128 4.128 5 C -0.128 4.128 6 C -0.153 4.153 7 C 0.567 3.433 8 O -0.584 6.584 9 N -0.607 5.607 10 C 0.112 3.888 11 C -0.142 4.142 12 C 0.164 3.836 13 H 0.089 0.911 14 N -0.599 5.599 15 C 0.177 3.823 16 C -0.261 4.261 17 H 0.079 0.921 18 C -0.049 4.049 19 N -0.939 5.939 20 Si 0.969 3.031 21 H -0.263 1.263 22 H -0.296 1.296 23 H -0.293 1.293 24 C 0.083 3.917 25 C -0.070 4.070 26 C -0.093 4.093 27 C -0.084 4.084 28 C -0.147 4.147 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.145 0.855 35 H 0.161 0.839 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.085 0.915 40 H -0.008 1.008 41 H 0.018 0.982 42 H 0.038 0.962 43 H 0.248 0.752 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.124 0.876 47 H 0.073 0.927 48 H 0.093 0.907 49 H 0.042 0.958 50 H 0.075 0.925 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.636 -12.180 15.177 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.053 4.053 4 C -0.145 4.145 5 C -0.145 4.145 6 C -0.156 4.156 7 C 0.359 3.641 8 O -0.467 6.467 9 N -0.338 5.338 10 C -0.010 4.010 11 C -0.182 4.182 12 C 0.055 3.945 13 H 0.107 0.893 14 N -0.320 5.320 15 C 0.032 3.968 16 C -0.391 4.391 17 H 0.097 0.903 18 C -0.244 4.244 19 N -0.585 5.585 20 Si 0.798 3.202 21 H -0.187 1.187 22 H -0.224 1.224 23 H -0.220 1.220 24 C -0.041 4.041 25 C -0.089 4.089 26 C -0.093 4.093 27 C -0.121 4.121 28 C -0.204 4.204 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.163 0.837 35 H 0.178 0.822 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.010 0.990 41 H 0.037 0.963 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.108 0.892 45 H 0.096 0.904 46 H 0.142 0.858 47 H 0.092 0.908 48 H 0.112 0.888 49 H 0.062 0.938 50 H 0.094 0.906 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.393 -11.931 15.642 22.733 hybrid contribution 0.567 0.672 -1.179 1.471 sum -10.826 -11.259 14.463 21.287 Atomic orbital electron populations 1.21754 0.93723 1.02773 1.02070 1.20740 0.96912 0.90772 1.04282 1.20327 0.95677 0.97268 0.92027 1.21319 0.99845 0.94435 0.98944 1.22884 0.96813 0.95821 0.98996 1.19783 1.06826 0.93337 0.95672 1.18396 0.77203 0.86514 0.82000 1.90692 1.54380 1.69937 1.31687 1.48380 1.67562 1.12248 1.05645 1.22262 0.99938 0.81338 0.97484 1.23222 0.99561 1.01505 0.93942 1.21563 0.94912 0.91301 0.86750 0.89282 1.44002 1.25391 1.61102 1.01530 1.20524 0.86859 0.93457 0.95927 1.19636 0.92575 1.43354 0.83539 0.90315 1.25840 0.95364 1.01049 1.02158 1.70224 1.01102 1.56180 1.31014 0.85168 0.78266 0.76491 0.80283 1.18692 1.22365 1.22047 1.23072 1.01714 0.98086 0.81202 1.21152 0.96222 0.94764 0.96735 1.19937 0.99894 0.93061 0.96400 1.20648 0.99600 0.99559 0.92334 1.21771 0.97138 0.99747 1.01750 0.90629 0.92428 0.93083 0.89973 0.89247 0.83708 0.82227 0.91234 0.89670 0.92720 0.89615 0.99004 0.96345 0.94285 0.94310 0.89169 0.90413 0.85838 0.90826 0.88823 0.93849 0.90561 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.72 71.98 0.70 -0.98 16 2 C -0.09 -1.19 5.38 29.85 0.16 -1.03 16 3 C -0.05 -1.03 5.14 -19.81 -0.10 -1.13 16 4 C -0.13 -2.84 9.66 22.23 0.21 -2.63 16 5 C -0.13 -3.44 8.62 22.52 0.19 -3.25 16 6 C -0.15 -4.65 5.87 -20.09 -0.12 -4.77 16 7 C 0.57 19.96 7.81 86.79 0.68 20.64 16 8 O -0.58 -23.71 16.60 -3.87 -0.06 -23.77 16 9 N -0.61 -19.98 3.33 -827.89 -2.75 -22.73 16 10 C 0.11 3.48 6.94 86.85 0.60 4.08 16 11 C -0.14 -4.89 6.66 31.99 0.21 -4.67 16 12 C 0.16 6.00 3.45 46.18 0.16 6.16 16 13 H 0.09 3.14 7.94 -2.38 -0.02 3.12 16 14 N -0.60 -27.61 2.93 -696.14 -2.04 -29.65 16 15 C 0.18 8.40 7.95 127.77 1.02 9.41 16 16 C -0.26 -13.24 9.60 84.03 0.81 -12.43 16 17 H 0.08 3.80 7.82 -2.91 -0.02 3.78 16 18 C -0.05 -2.60 5.19 84.86 0.44 -2.16 16 19 N -0.94 -53.36 10.53 21.65 0.23 -53.14 16 20 Si 0.97 42.91 29.56 68.60 2.03 44.94 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 22 H -0.30 -13.36 7.11 99.48 0.71 -12.66 16 23 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 24 C 0.08 2.65 4.45 86.73 0.39 3.04 16 25 C -0.07 -1.89 9.22 22.53 0.21 -1.68 16 26 C -0.09 -1.96 5.13 -19.90 -0.10 -2.06 16 27 C -0.08 -1.26 5.38 29.85 0.16 -1.10 16 28 C -0.15 -2.00 9.72 71.98 0.70 -1.30 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.66 6.79 -2.38 -0.02 0.65 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.98 8.05 -2.39 -0.02 0.96 16 33 H 0.09 0.98 5.59 -2.39 -0.01 0.97 16 34 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.16 4.41 2.75 -7.80 -0.02 4.39 16 36 H 0.07 2.22 7.98 -2.39 -0.02 2.20 16 37 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.05 2.12 7.18 -2.38 -0.02 2.10 16 39 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 40 H -0.01 -0.44 7.63 -2.39 -0.02 -0.46 16 41 H 0.02 0.77 6.05 -2.39 -0.01 0.75 16 42 H 0.04 2.03 6.64 -2.39 -0.02 2.02 16 43 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 44 H 0.09 2.58 6.74 -2.39 -0.02 2.57 16 45 H 0.08 2.64 4.49 -2.39 -0.01 2.63 16 46 H 0.12 3.44 7.67 -2.91 -0.02 3.42 16 47 H 0.07 1.09 8.05 -2.39 -0.02 1.07 16 48 H 0.09 1.08 5.60 -2.39 -0.01 1.07 16 49 H 0.04 0.71 8.14 -2.38 -0.02 0.70 16 50 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.06 0.78 6.79 -2.39 -0.02 0.77 16 Total: -1.00 -64.63 389.11 4.63 -60.00 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.92 Total: 20.23 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 6.32 Total: 4.12 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -4.57 Total: -105.52 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.06 Total: -23.77 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -64.63 4.63 -60.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980573672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.323 kcal (2) G-P(sol) polarization free energy of solvation -64.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds