Wall clock time and date at job start Tue Mar 31 2020 16:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46873 * 2 1 4 4 C 1.38255 * 119.99507 * 265.02029 * 3 2 1 5 5 C 1.38217 * 119.99740 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.00087 * 359.94716 * 5 4 3 7 7 C 1.38215 * 119.99734 * 0.05278 * 6 5 4 8 8 C 1.38212 * 120.00209 * 85.00348 * 3 2 1 9 9 C 1.50696 * 120.00198 * 359.97438 * 8 3 2 10 10 C 1.50703 * 109.47189 * 85.02345 * 9 8 3 11 11 O 1.21275 * 119.99598 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00190 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00197 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46770 * 35.00509 * 13 12 10 15 15 C 1.52995 * 109.47566 * 275.00436 * 13 12 10 16 16 C 1.52997 * 109.47446 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47120 * 59.99935 * 16 15 13 18 18 C 1.53005 * 109.47037 * 300.00233 * 17 16 15 19 19 H 1.08997 * 109.46754 * 299.99967 * 18 17 16 20 20 N 1.46494 * 109.47073 * 179.97438 * 18 17 16 21 21 C 1.36941 * 120.00129 * 84.99803 * 20 18 17 22 22 H 1.08004 * 119.99974 * 359.97438 * 21 20 18 23 23 C 1.38808 * 120.00159 * 179.97438 * 21 20 18 24 24 N 1.31619 * 120.00018 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99875 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47151 * 60.00083 * 25 23 21 27 27 H 1.48505 * 109.47153 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47340 * 299.99861 * 25 23 21 29 29 C 1.52996 * 109.46984 * 59.99938 * 18 17 16 30 30 H 1.08999 * 109.47132 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46782 * 300.00304 * 1 2 3 32 32 H 1.09002 * 109.47319 * 60.00240 * 1 2 3 33 33 H 1.08999 * 109.46782 * 239.99696 * 2 1 3 34 34 H 1.08997 * 109.46893 * 119.99629 * 2 1 3 35 35 H 1.07997 * 120.00435 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.99701 * 179.97438 * 5 4 3 37 37 H 1.07995 * 120.00047 * 180.32212 * 6 5 4 38 38 H 1.08000 * 119.99306 * 179.97438 * 7 6 5 39 39 H 1.08996 * 109.47347 * 205.02852 * 9 8 3 40 40 H 1.09005 * 109.47111 * 325.02646 * 9 8 3 41 41 H 0.97004 * 120.00085 * 0.02562 * 12 10 9 42 42 H 1.09008 * 109.46880 * 300.00189 * 15 13 12 43 43 H 1.09005 * 109.47134 * 59.99518 * 15 13 12 44 44 H 1.08997 * 109.47143 * 299.99678 * 16 15 13 45 45 H 1.08998 * 109.47245 * 179.97438 * 16 15 13 46 46 H 1.09000 * 109.47154 * 180.02562 * 17 16 15 47 47 H 1.09002 * 109.47018 * 60.00216 * 17 16 15 48 48 H 0.96998 * 120.00621 * 264.99830 * 20 18 17 49 49 H 0.97001 * 119.99789 * 179.97438 * 24 23 21 50 50 H 1.09007 * 109.46747 * 180.02562 * 29 18 17 51 51 H 1.08997 * 109.47351 * 60.00396 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3607 2.0379 -1.1929 5 6 2.8219 3.3408 -1.1929 6 6 2.9538 4.0275 -0.0001 7 6 2.6255 3.4106 1.1923 8 6 2.1644 2.1072 1.1924 9 6 1.8056 1.4350 2.4925 10 6 2.9847 0.6380 2.9881 11 8 4.0150 0.6183 2.3487 12 7 2.8945 -0.0520 4.1423 13 6 4.0405 -0.8272 4.6238 14 1 4.9639 -0.3080 4.3672 15 6 4.0333 -2.2093 3.9676 16 6 5.2306 -3.0186 4.4700 17 6 5.1391 -3.1749 5.9893 18 6 5.1463 -1.7928 6.6455 19 1 6.0695 -1.2734 6.3885 20 7 5.0582 -1.9424 8.1001 21 6 6.1931 -2.1533 8.8368 22 1 7.1532 -2.2097 8.3453 23 6 6.1096 -2.2945 10.2151 24 7 4.9397 -2.2252 10.8141 25 14 7.6580 -2.5815 11.2201 26 1 8.5887 -1.4398 11.0321 27 1 7.3010 -2.6984 12.6568 28 1 8.3149 -3.8350 10.7702 29 6 3.9491 -0.9835 6.1430 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2576 1.5016 -2.1246 36 1 3.0788 3.8227 -2.1247 37 1 3.3092 5.0473 -0.0006 38 1 2.7289 3.9469 2.1240 39 1 1.5415 2.1911 3.2318 40 1 0.9572 0.7689 2.3351 41 1 2.0705 -0.0359 4.6539 42 1 3.1098 -2.7285 4.2242 43 1 4.0989 -2.0980 2.8853 44 1 6.1538 -2.4993 4.2131 45 1 5.2252 -4.0034 4.0029 46 1 5.9923 -3.7511 6.3473 47 1 4.2159 -3.6943 6.2462 48 1 4.1959 -1.8920 8.5415 49 1 4.8814 -2.3242 11.7773 50 1 3.9545 0.0014 6.6102 51 1 3.0259 -1.5028 6.4000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981166765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:50 Heat of formation + Delta-G solvation = -31.563463 kcal Electronic energy + Delta-G solvation = -28152.056554 eV Core-core repulsion = 24435.949183 eV Total energy + Delta-G solvation = -3716.107371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.48057 -39.30246 -37.82193 -34.66828 -34.51240 -33.35254 -32.71562 -31.12722 -29.85342 -29.47589 -27.97867 -27.25154 -24.10599 -23.73618 -22.63215 -21.92445 -21.41433 -20.61991 -20.22510 -19.35078 -17.36670 -16.79573 -16.69683 -16.31627 -16.06678 -15.25576 -14.83273 -14.62525 -14.38845 -14.06637 -13.88877 -13.81707 -13.65356 -13.52860 -13.33388 -13.19828 -13.06742 -12.70095 -12.34761 -12.24246 -12.12681 -12.00177 -11.94595 -11.51618 -11.03446 -10.99490 -10.92039 -10.89644 -10.86116 -10.72012 -10.34220 -10.28529 -10.17106 -10.05993 -9.70026 -9.58014 -8.95401 -8.94716 -8.85230 -8.73870 -6.96388 -5.76980 -3.05541 1.16963 1.25193 2.64787 3.16234 3.44285 3.48738 3.49542 3.66945 4.40519 4.53177 4.58134 4.68858 4.74814 4.82816 4.93298 4.99723 5.02795 5.11242 5.11780 5.18031 5.28831 5.34414 5.35494 5.42964 5.50917 5.61354 5.64778 5.67539 5.69815 5.75806 5.82107 5.88078 5.91663 5.98063 6.00363 6.03893 6.14800 6.31048 6.31384 6.34888 6.35116 6.48358 6.52555 6.55485 6.64876 6.73587 6.85082 6.97200 7.12742 7.54134 7.70356 8.25957 8.41902 9.52946 10.10251 10.45049 11.45701 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022276 B = 0.002197 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.681776 B =12738.732418 C =13154.081047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.064 4.064 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.125 4.125 7 C -0.105 4.105 8 C -0.061 4.061 9 C -0.109 4.109 10 C 0.513 3.487 11 O -0.531 6.531 12 N -0.726 5.726 13 C 0.149 3.851 14 H 0.086 0.914 15 C -0.123 4.123 16 C -0.115 4.115 17 C -0.136 4.136 18 C 0.184 3.816 19 H 0.048 0.952 20 N -0.724 5.724 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.129 4.129 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.398 0.602 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.068 0.932 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.395 8.120 -23.568 27.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.064 4.064 4 C -0.137 4.137 5 C -0.137 4.137 6 C -0.143 4.143 7 C -0.123 4.123 8 C -0.061 4.061 9 C -0.149 4.149 10 C 0.299 3.701 11 O -0.407 6.407 12 N -0.377 5.377 13 C 0.045 3.955 14 H 0.104 0.896 15 C -0.161 4.161 16 C -0.153 4.153 17 C -0.177 4.177 18 C 0.073 3.927 19 H 0.066 0.934 20 N -0.365 5.365 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.168 4.168 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.232 0.768 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.217 0.783 49 H 0.065 0.935 50 H 0.086 0.914 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.467 8.094 -23.924 27.340 hybrid contribution 0.190 -0.163 1.071 1.100 sum -10.277 7.931 -22.854 26.283 Atomic orbital electron populations 1.21777 0.94693 1.01848 1.02135 1.20569 0.95931 0.92894 1.03199 1.19659 0.98393 0.95683 0.92629 1.20969 1.00232 0.95212 0.97316 1.21098 0.99779 0.94839 0.98007 1.21063 1.00717 0.99962 0.92553 1.20987 0.98557 0.94500 0.98216 1.19101 0.99951 0.93978 0.93080 1.20777 0.97809 1.00230 0.96055 1.20442 0.89361 0.79416 0.80895 1.90729 1.30892 1.62915 1.56129 1.46189 1.17300 1.50162 1.24008 1.21009 0.89208 0.91339 0.93980 0.89575 1.21869 0.99199 0.95322 0.99749 1.21485 0.97583 0.99065 0.97214 1.22289 1.01932 1.00638 0.92826 1.20094 0.94904 0.92313 0.85390 0.93418 1.42394 1.07593 1.86558 0.99917 1.19200 0.87379 1.41114 0.89134 0.91221 1.24734 0.96693 1.02968 0.96615 1.69648 1.22328 1.57203 1.09105 0.86278 0.82575 0.78056 0.79354 1.21272 1.21728 1.21278 1.22085 1.00699 1.01483 0.92493 0.92245 0.92509 0.92491 0.91009 0.90957 0.86283 0.86293 0.86205 0.86204 0.88070 0.87862 0.76774 0.92123 0.92290 0.92219 0.92559 0.91925 0.92678 0.78345 0.93506 0.91374 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.72 37.16 0.36 -0.64 16 2 C -0.09 -0.78 5.38 -27.88 -0.15 -0.93 16 3 C -0.06 -0.65 5.13 -104.62 -0.54 -1.19 16 4 C -0.12 -1.15 9.68 -39.58 -0.38 -1.53 16 5 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 6 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 7 C -0.10 -1.08 9.68 -39.58 -0.38 -1.46 16 8 C -0.06 -0.64 4.37 -104.63 -0.46 -1.10 16 9 C -0.11 -0.98 5.16 -29.04 -0.15 -1.13 16 10 C 0.51 6.30 6.99 -10.99 -0.08 6.22 16 11 O -0.53 -8.74 15.70 5.56 0.09 -8.65 16 12 N -0.73 -8.21 5.08 -53.81 -0.27 -8.48 16 13 C 0.15 2.07 2.45 -67.94 -0.17 1.90 16 14 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 15 C -0.12 -1.65 5.49 -26.73 -0.15 -1.80 16 16 C -0.11 -1.66 5.92 -26.73 -0.16 -1.82 16 17 C -0.14 -2.40 5.50 -26.73 -0.15 -2.55 16 18 C 0.18 3.56 2.77 -67.93 -0.19 3.37 16 19 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 20 N -0.72 -17.80 5.12 -53.43 -0.27 -18.07 16 21 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 22 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -27.98 13.06 55.49 0.72 -27.25 16 25 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 C -0.13 -2.01 4.86 -26.73 -0.13 -2.14 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.36 6.80 -51.93 -0.35 0.01 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 34 H 0.07 0.72 6.42 -51.93 -0.33 0.39 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.10 0.71 8.05 -51.93 -0.42 0.29 16 40 H 0.10 0.73 5.62 -51.93 -0.29 0.44 16 41 H 0.40 3.46 8.60 -40.82 -0.35 3.11 16 42 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 49 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 50 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 51 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 405.27 15.07 6.11 6.11 Total: -1.00 -32.74 405.27 -11.17 -43.90 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -8.76 Total: 10.15 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -3.75 Total: -15.06 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.18 Total: -53.81 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.74 -11.17 -43.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981166765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.340 kcal (2) G-P(sol) polarization free energy of solvation -32.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds