Wall clock time and date at job start Tue Mar 31 2020 16:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46873 * 2 1 4 4 C 1.38255 * 119.99507 * 265.02029 * 3 2 1 5 5 C 1.38217 * 119.99740 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.00087 * 359.94716 * 5 4 3 7 7 C 1.38215 * 119.99734 * 0.05278 * 6 5 4 8 8 C 1.38212 * 120.00209 * 85.00348 * 3 2 1 9 9 C 1.50696 * 120.00198 * 359.97438 * 8 3 2 10 10 C 1.50703 * 109.47189 * 85.02345 * 9 8 3 11 11 O 1.21275 * 119.99598 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00190 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00197 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46770 * 35.00509 * 13 12 10 15 15 C 1.52995 * 109.47566 * 275.00436 * 13 12 10 16 16 C 1.52997 * 109.47446 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47120 * 59.99935 * 16 15 13 18 18 C 1.53005 * 109.47037 * 300.00233 * 17 16 15 19 19 H 1.08997 * 109.46754 * 299.99967 * 18 17 16 20 20 N 1.46494 * 109.47073 * 179.97438 * 18 17 16 21 21 C 1.36941 * 120.00129 * 84.99803 * 20 18 17 22 22 H 1.08004 * 119.99974 * 359.97438 * 21 20 18 23 23 C 1.38808 * 120.00159 * 179.97438 * 21 20 18 24 24 N 1.31619 * 120.00018 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99875 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47151 * 60.00083 * 25 23 21 27 27 H 1.48505 * 109.47153 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47340 * 299.99861 * 25 23 21 29 29 C 1.52996 * 109.46984 * 59.99938 * 18 17 16 30 30 H 1.08999 * 109.47132 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46782 * 300.00304 * 1 2 3 32 32 H 1.09002 * 109.47319 * 60.00240 * 1 2 3 33 33 H 1.08999 * 109.46782 * 239.99696 * 2 1 3 34 34 H 1.08997 * 109.46893 * 119.99629 * 2 1 3 35 35 H 1.07997 * 120.00435 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.99701 * 179.97438 * 5 4 3 37 37 H 1.07995 * 120.00047 * 180.32212 * 6 5 4 38 38 H 1.08000 * 119.99306 * 179.97438 * 7 6 5 39 39 H 1.08996 * 109.47347 * 205.02852 * 9 8 3 40 40 H 1.09005 * 109.47111 * 325.02646 * 9 8 3 41 41 H 0.97004 * 120.00085 * 0.02562 * 12 10 9 42 42 H 1.09008 * 109.46880 * 300.00189 * 15 13 12 43 43 H 1.09005 * 109.47134 * 59.99518 * 15 13 12 44 44 H 1.08997 * 109.47143 * 299.99678 * 16 15 13 45 45 H 1.08998 * 109.47245 * 179.97438 * 16 15 13 46 46 H 1.09000 * 109.47154 * 180.02562 * 17 16 15 47 47 H 1.09002 * 109.47018 * 60.00216 * 17 16 15 48 48 H 0.96998 * 120.00621 * 264.99830 * 20 18 17 49 49 H 0.97001 * 119.99789 * 179.97438 * 24 23 21 50 50 H 1.09007 * 109.46747 * 180.02562 * 29 18 17 51 51 H 1.08997 * 109.47351 * 60.00396 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3607 2.0379 -1.1929 5 6 2.8219 3.3408 -1.1929 6 6 2.9538 4.0275 -0.0001 7 6 2.6255 3.4106 1.1923 8 6 2.1644 2.1072 1.1924 9 6 1.8056 1.4350 2.4925 10 6 2.9847 0.6380 2.9881 11 8 4.0150 0.6183 2.3487 12 7 2.8945 -0.0520 4.1423 13 6 4.0405 -0.8272 4.6238 14 1 4.9639 -0.3080 4.3672 15 6 4.0333 -2.2093 3.9676 16 6 5.2306 -3.0186 4.4700 17 6 5.1391 -3.1749 5.9893 18 6 5.1463 -1.7928 6.6455 19 1 6.0695 -1.2734 6.3885 20 7 5.0582 -1.9424 8.1001 21 6 6.1931 -2.1533 8.8368 22 1 7.1532 -2.2097 8.3453 23 6 6.1096 -2.2945 10.2151 24 7 4.9397 -2.2252 10.8141 25 14 7.6580 -2.5815 11.2201 26 1 8.5887 -1.4398 11.0321 27 1 7.3010 -2.6984 12.6568 28 1 8.3149 -3.8350 10.7702 29 6 3.9491 -0.9835 6.1430 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2576 1.5016 -2.1246 36 1 3.0788 3.8227 -2.1247 37 1 3.3092 5.0473 -0.0006 38 1 2.7289 3.9469 2.1240 39 1 1.5415 2.1911 3.2318 40 1 0.9572 0.7689 2.3351 41 1 2.0705 -0.0359 4.6539 42 1 3.1098 -2.7285 4.2242 43 1 4.0989 -2.0980 2.8853 44 1 6.1538 -2.4993 4.2131 45 1 5.2252 -4.0034 4.0029 46 1 5.9923 -3.7511 6.3473 47 1 4.2159 -3.6943 6.2462 48 1 4.1959 -1.8920 8.5415 49 1 4.8814 -2.3242 11.7773 50 1 3.9545 0.0014 6.6102 51 1 3.0259 -1.5028 6.4000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981166765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:49 Heat of formation + Delta-G solvation = -50.031526 kcal Electronic energy + Delta-G solvation = -28152.857389 eV Core-core repulsion = 24435.949183 eV Total energy + Delta-G solvation = -3716.908207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.38147 -40.24294 -39.06536 -36.21389 -35.18591 -34.78604 -33.51162 -32.91097 -30.88121 -30.31468 -29.51329 -28.16147 -25.70608 -24.72649 -23.62909 -23.09499 -22.49305 -21.55690 -21.22358 -20.67457 -19.17652 -17.97329 -17.61033 -17.13545 -17.01954 -16.42554 -16.03326 -15.81263 -15.63697 -15.39513 -15.06765 -15.00018 -14.76122 -14.59629 -14.32441 -14.26367 -13.95341 -13.81533 -13.58743 -13.39445 -13.00494 -12.90440 -12.82286 -12.76171 -12.63356 -12.28557 -12.17238 -12.13982 -12.05125 -11.96841 -11.68338 -11.62858 -11.54255 -11.47645 -11.37259 -10.87585 -10.79734 -10.00485 -9.66882 -9.45247 -8.99833 -7.93914 -5.21662 0.45098 0.53731 1.47020 1.49252 1.55254 1.69957 2.21836 2.56780 2.92774 3.39107 3.63995 3.69574 3.86018 3.88648 3.97977 4.03098 4.09166 4.12370 4.29317 4.31616 4.32059 4.36997 4.46287 4.51676 4.54655 4.56043 4.58012 4.66055 4.68689 4.74736 4.76603 4.77749 5.02670 5.04970 5.09932 5.13464 5.17250 5.20099 5.22118 5.25613 5.35525 5.42072 5.49953 5.50819 5.55133 5.61604 5.65108 5.66595 5.77379 6.17037 6.28891 6.63656 7.33235 7.35172 8.10919 8.34902 9.29157 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022276 B = 0.002197 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.681776 B =12738.732418 C =13154.081047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.078 4.078 4 C -0.133 4.133 5 C -0.126 4.126 6 C -0.137 4.137 7 C -0.122 4.122 8 C -0.079 4.079 9 C -0.101 4.101 10 C 0.514 3.486 11 O -0.575 6.575 12 N -0.715 5.715 13 C 0.160 3.840 14 H 0.063 0.937 15 C -0.114 4.114 16 C -0.107 4.107 17 C -0.126 4.126 18 C 0.177 3.823 19 H 0.033 0.967 20 N -0.735 5.735 21 C -0.238 4.238 22 H 0.071 0.929 23 C -0.075 4.075 24 N -0.968 5.968 25 Si 0.968 3.032 26 H -0.280 1.280 27 H -0.295 1.295 28 H -0.279 1.279 29 C -0.114 4.114 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.415 0.585 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.040 0.960 47 H 0.055 0.945 48 H 0.374 0.626 49 H 0.251 0.749 50 H 0.060 0.940 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.348 8.208 -24.920 28.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 C -0.078 4.078 4 C -0.150 4.150 5 C -0.144 4.144 6 C -0.155 4.155 7 C -0.140 4.140 8 C -0.079 4.079 9 C -0.140 4.140 10 C 0.302 3.698 11 O -0.455 6.455 12 N -0.367 5.367 13 C 0.054 3.946 14 H 0.081 0.919 15 C -0.153 4.153 16 C -0.146 4.146 17 C -0.166 4.166 18 C 0.068 3.932 19 H 0.051 0.949 20 N -0.375 5.375 21 C -0.370 4.370 22 H 0.089 0.911 23 C -0.267 4.267 24 N -0.618 5.618 25 Si 0.798 3.202 26 H -0.206 1.206 27 H -0.221 1.221 28 H -0.206 1.206 29 C -0.153 4.153 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.152 0.848 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.251 0.749 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.206 0.794 49 H 0.060 0.940 50 H 0.079 0.921 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.438 8.185 -25.311 28.956 hybrid contribution 0.512 -0.154 1.396 1.495 sum -10.926 8.031 -23.914 27.491 Atomic orbital electron populations 1.21749 0.93123 1.02575 1.02523 1.20565 0.97246 0.91978 1.02612 1.19936 0.98539 0.96385 0.92915 1.21264 1.00211 0.95678 0.97892 1.21416 0.99255 0.94877 0.98858 1.21365 1.00638 1.00911 0.92561 1.21256 0.98867 0.94886 0.98985 1.19334 1.00489 0.94313 0.93789 1.20798 0.96688 1.00608 0.95929 1.20993 0.89623 0.78873 0.80294 1.90713 1.32869 1.64435 1.57436 1.46014 1.17123 1.49521 1.24018 1.20687 0.89400 0.91912 0.92583 0.91908 1.21788 0.99263 0.94670 0.99540 1.21415 0.98038 1.00384 0.94737 1.22092 1.00915 0.98691 0.94910 1.20302 0.96033 0.93861 0.82995 0.94914 1.42561 1.06381 1.86635 1.01926 1.19532 0.88330 1.39504 0.89645 0.91146 1.25491 0.99478 1.03938 0.97778 1.69792 1.24147 1.59004 1.08898 0.85288 0.79331 0.78148 0.77475 1.20642 1.22082 1.20552 1.21866 0.99362 1.00419 0.93608 0.91313 0.91989 0.92248 0.90935 0.92170 0.84846 0.84283 0.84562 0.85409 0.85815 0.85671 0.74878 0.90578 0.92210 0.92689 0.90637 0.94156 0.92648 0.79381 0.94049 0.92146 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.72 71.98 0.70 -0.95 16 2 C -0.09 -1.41 5.38 29.85 0.16 -1.25 16 3 C -0.08 -1.51 5.13 -19.87 -0.10 -1.61 16 4 C -0.13 -2.41 9.68 22.27 0.22 -2.19 16 5 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 6 C -0.14 -2.47 10.05 22.27 0.22 -2.24 16 7 C -0.12 -2.40 9.68 22.27 0.22 -2.18 16 8 C -0.08 -1.57 4.37 -19.87 -0.09 -1.66 16 9 C -0.10 -1.61 5.16 29.10 0.15 -1.46 16 10 C 0.51 11.93 6.99 87.66 0.61 12.54 16 11 O -0.58 -18.73 15.70 -3.01 -0.05 -18.77 16 12 N -0.72 -14.89 5.08 -442.55 -2.25 -17.13 16 13 C 0.16 4.26 2.45 44.99 0.11 4.37 16 14 H 0.06 2.01 7.58 -2.39 -0.02 2.00 16 15 C -0.11 -2.85 5.49 30.59 0.17 -2.68 16 16 C -0.11 -2.96 5.92 30.59 0.18 -2.77 16 17 C -0.13 -4.37 5.50 30.60 0.17 -4.20 16 18 C 0.18 6.87 2.77 44.99 0.12 7.00 16 19 H 0.03 1.37 8.08 -2.39 -0.02 1.35 16 20 N -0.74 -36.55 5.12 -322.95 -1.65 -38.21 16 21 C -0.24 -13.24 9.93 84.03 0.83 -12.40 16 22 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 23 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 24 N -0.97 -58.70 13.06 21.65 0.28 -58.42 16 25 Si 0.97 46.33 29.55 68.60 2.03 48.35 16 26 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 27 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 29 C -0.11 -3.47 4.86 30.59 0.15 -3.32 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.64 6.80 -2.39 -0.02 0.63 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 1.13 8.05 -2.39 -0.02 1.11 16 34 H 0.06 1.12 6.42 -2.39 -0.02 1.10 16 35 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 38 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 39 H 0.12 1.40 8.05 -2.39 -0.02 1.38 16 40 H 0.13 1.42 5.62 -2.38 -0.01 1.41 16 41 H 0.41 6.10 8.60 -92.71 -0.80 5.30 16 42 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 44 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 48 H 0.37 19.69 7.80 -92.71 -0.72 18.97 16 49 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 50 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 51 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -71.22 405.27 2.28 -68.94 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: -0.60 Total: 36.01 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: 4.52 Total: -20.78 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -3.62 Total: -113.76 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.05 Total: -18.77 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -71.22 2.28 -68.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981166765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.912 kcal (2) G-P(sol) polarization free energy of solvation -71.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds