Wall clock time and date at job start Tue Mar 31 2020 16:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46944 * 2 1 4 4 C 1.38254 * 120.00273 * 265.23251 * 3 2 1 5 5 C 1.38208 * 119.99793 * 180.25401 * 4 3 2 6 6 C 1.38260 * 120.00228 * 359.78861 * 5 4 3 7 7 C 1.38212 * 119.99826 * 359.96102 * 6 5 4 8 8 C 1.38215 * 119.99548 * 85.00417 * 3 2 1 9 9 C 1.50695 * 120.00304 * 359.97438 * 8 3 2 10 10 C 1.50702 * 109.47135 * 84.73245 * 9 8 3 11 11 O 1.21283 * 119.99466 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00351 * 180.02562 * 10 9 8 13 13 C 1.46491 * 119.99958 * 179.97438 * 12 10 9 14 14 H 1.08991 * 109.47703 * 34.99644 * 13 12 10 15 15 C 1.53001 * 109.47219 * 274.99376 * 13 12 10 16 16 C 1.52996 * 109.47349 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47220 * 60.00418 * 16 15 13 18 18 C 1.53008 * 109.47074 * 300.00109 * 17 16 15 19 19 H 1.08999 * 109.47058 * 179.97438 * 18 17 16 20 20 N 1.46499 * 109.47014 * 299.99808 * 18 17 16 21 21 C 1.36939 * 119.99933 * 275.27473 * 20 18 17 22 22 H 1.08001 * 119.99700 * 359.72658 * 21 20 18 23 23 C 1.38810 * 120.00095 * 179.71972 * 21 20 18 24 24 N 1.31624 * 119.99740 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47173 * 60.00435 * 25 23 21 27 27 H 1.48497 * 109.47172 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47132 * 300.00314 * 25 23 21 29 29 C 1.52999 * 109.46675 * 59.99923 * 18 17 16 30 30 H 1.08997 * 109.47430 * 59.99903 * 1 2 3 31 31 H 1.09010 * 109.46806 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47147 * 299.99824 * 1 2 3 33 33 H 1.09004 * 109.47063 * 240.00507 * 2 1 3 34 34 H 1.08997 * 109.47430 * 120.00097 * 2 1 3 35 35 H 1.08003 * 120.00044 * 0.02562 * 4 3 2 36 36 H 1.08001 * 119.99645 * 179.76829 * 5 4 3 37 37 H 1.07999 * 120.00007 * 179.97438 * 6 5 4 38 38 H 1.07999 * 119.99386 * 179.97438 * 7 6 5 39 39 H 1.08997 * 109.47193 * 324.73207 * 9 8 3 40 40 H 1.09004 * 109.47405 * 204.73103 * 9 8 3 41 41 H 0.97000 * 119.99341 * 359.97438 * 12 10 9 42 42 H 1.09005 * 109.47539 * 300.00558 * 15 13 12 43 43 H 1.09006 * 109.47137 * 60.00177 * 15 13 12 44 44 H 1.08997 * 109.47425 * 180.02562 * 16 15 13 45 45 H 1.08996 * 109.47216 * 300.00101 * 16 15 13 46 46 H 1.08995 * 109.47753 * 179.97438 * 17 16 15 47 47 H 1.09005 * 109.47067 * 59.99557 * 17 16 15 48 48 H 0.97001 * 119.99790 * 94.99446 * 20 18 17 49 49 H 0.96998 * 119.99409 * 179.97438 * 24 23 21 50 50 H 1.08991 * 109.47925 * 60.00288 * 29 18 17 51 51 H 1.09009 * 109.46506 * 180.02562 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3566 2.0395 -1.1931 5 6 2.8222 3.3408 -1.1926 6 6 2.9596 4.0254 0.0007 7 6 2.6305 3.4086 1.1931 8 6 2.1644 2.1071 1.1925 9 6 1.8055 1.4347 2.4925 10 6 2.9822 0.6319 2.9844 11 8 4.0108 0.6078 2.3422 12 7 2.8913 -0.0600 4.1374 13 6 4.0350 -0.8408 4.6152 14 1 4.9600 -0.3251 4.3580 15 6 4.0208 -2.2217 3.9564 16 6 5.2149 -3.0374 4.4559 17 6 5.1245 -3.1963 5.9749 18 6 5.1386 -1.8154 6.6339 19 1 5.0737 -1.9286 7.7160 20 7 6.3822 -1.1223 6.2886 21 6 7.5167 -1.3451 7.0224 22 1 7.4935 -2.0285 7.8584 23 6 8.6965 -0.6928 6.6916 24 7 8.7246 0.1403 5.6730 25 14 10.2439 -0.9963 7.6931 26 1 10.6003 -2.4365 7.6293 27 1 11.3582 -0.1852 7.1403 28 1 10.0031 -0.6079 9.1061 29 6 3.9444 -0.9998 6.1343 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.2495 1.5046 -2.1253 36 1 3.0790 3.8227 -2.1243 37 1 3.3239 5.0421 0.0012 38 1 2.7383 3.9433 2.1252 39 1 0.9539 0.7727 2.3362 40 1 1.5465 2.1911 3.2335 41 1 2.0685 -0.0410 4.6508 42 1 3.0957 -2.7376 4.2137 43 1 4.0848 -2.1086 2.8741 44 1 5.2051 -4.0209 3.9862 45 1 6.1402 -2.5217 4.1990 46 1 5.9749 -3.7778 6.3308 47 1 4.1991 -3.7119 6.2318 48 1 6.4030 -0.5086 5.5376 49 1 9.5490 0.5963 5.4421 50 1 3.0192 -1.5154 6.3912 51 1 3.9548 -0.0159 6.6034 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981166766.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:53 Heat of formation + Delta-G solvation = -26.425587 kcal Electronic energy + Delta-G solvation = -28815.608168 eV Core-core repulsion = 25099.723592 eV Total energy + Delta-G solvation = -3715.884576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.32272 -39.19676 -37.79543 -34.45298 -34.34409 -33.03598 -32.56293 -30.90381 -29.71716 -29.33458 -28.11191 -27.18298 -23.98983 -23.62558 -22.52992 -21.85205 -21.59594 -20.67266 -20.05898 -18.54503 -17.24695 -16.89220 -16.50114 -16.16934 -15.80661 -15.09052 -14.66633 -14.56931 -14.40487 -13.94894 -13.77680 -13.65827 -13.57105 -13.50635 -13.20678 -13.07638 -12.92891 -12.44696 -12.17645 -12.04744 -11.89885 -11.87127 -11.73915 -11.40870 -11.34185 -10.90833 -10.84948 -10.78107 -10.77006 -10.69454 -10.19596 -10.14656 -10.04725 -9.85790 -9.50177 -9.43351 -8.86200 -8.80119 -8.67692 -8.59625 -6.89935 -5.69752 -2.99121 1.31091 1.39412 2.85887 3.33787 3.47147 3.51498 3.52972 3.81777 4.53922 4.63749 4.65700 4.81527 4.86903 4.98873 5.05639 5.13189 5.18257 5.23628 5.26606 5.29973 5.40764 5.46863 5.53457 5.56047 5.64450 5.73635 5.74484 5.77165 5.78917 5.89304 5.92966 5.94637 6.04486 6.11425 6.12922 6.15544 6.23081 6.43023 6.44959 6.47405 6.49027 6.61957 6.67065 6.75556 6.85212 6.89023 6.99208 7.06242 7.14864 7.72724 7.74761 8.47635 8.48344 9.58908 10.16913 10.51089 11.52254 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014514 B = 0.002932 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.672528 B = 9547.937257 C =10681.949676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.064 4.064 4 C -0.120 4.120 5 C -0.119 4.119 6 C -0.124 4.124 7 C -0.103 4.103 8 C -0.061 4.061 9 C -0.107 4.107 10 C 0.509 3.491 11 O -0.521 6.521 12 N -0.728 5.728 13 C 0.146 3.854 14 H 0.098 0.902 15 C -0.119 4.119 16 C -0.110 4.110 17 C -0.135 4.135 18 C 0.179 3.821 19 H 0.050 0.950 20 N -0.721 5.721 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.930 5.930 25 Si 0.905 3.095 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 C -0.127 4.127 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.394 0.606 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.042 0.958 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.060 0.940 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.142 2.025 -10.007 23.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.064 4.064 4 C -0.138 4.138 5 C -0.137 4.137 6 C -0.142 4.142 7 C -0.121 4.121 8 C -0.061 4.061 9 C -0.147 4.147 10 C 0.294 3.706 11 O -0.395 6.395 12 N -0.379 5.379 13 C 0.042 3.958 14 H 0.116 0.884 15 C -0.158 4.158 16 C -0.148 4.148 17 C -0.175 4.175 18 C 0.068 3.932 19 H 0.068 0.932 20 N -0.364 5.364 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.578 5.578 25 Si 0.736 3.264 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.214 1.214 29 C -0.166 4.166 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.227 0.773 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.061 0.939 48 H 0.220 0.780 49 H 0.065 0.935 50 H 0.079 0.921 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.235 1.985 -10.359 22.819 hybrid contribution 0.646 0.073 0.536 0.842 sum -19.589 2.058 -9.823 22.010 Atomic orbital electron populations 1.21771 0.94815 1.01703 1.02065 1.20564 0.95787 0.92984 1.03251 1.19640 0.98518 0.95587 0.92640 1.20953 1.00336 0.95203 0.97284 1.21087 0.99769 0.94879 0.97996 1.21064 1.00603 1.00028 0.92555 1.20990 0.98386 0.94552 0.98222 1.19105 0.99956 0.93971 0.93092 1.20766 0.97839 1.00076 0.96028 1.20433 0.89324 0.79673 0.81133 1.90785 1.30661 1.62424 1.55666 1.46188 1.17299 1.50263 1.24163 1.21036 0.89659 0.91439 0.93640 0.88421 1.21832 0.98655 0.95354 0.99919 1.21353 0.98784 0.98564 0.96086 1.22177 0.99886 0.99774 0.95701 1.20154 0.86083 0.90252 0.96668 0.93193 1.42509 1.05155 1.51607 1.37137 1.19173 0.87955 1.21067 1.08941 0.91314 1.24736 0.97879 0.99725 0.98525 1.69663 1.26965 1.31858 1.29290 0.86313 0.83332 0.77375 0.79406 1.21360 1.21782 1.21392 1.22068 0.99298 1.01287 0.93944 0.92536 0.92351 0.92563 0.91020 0.90922 0.86329 0.86320 0.86199 0.86187 0.88069 0.88257 0.77314 0.92898 0.92426 0.93374 0.90376 0.92052 0.93940 0.78015 0.93476 0.92126 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.72 37.16 0.36 -0.77 16 2 C -0.09 -0.91 5.38 -27.88 -0.15 -1.06 16 3 C -0.06 -0.76 5.13 -104.62 -0.54 -1.30 16 4 C -0.12 -1.35 9.68 -39.59 -0.38 -1.73 16 5 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 6 C -0.12 -1.42 10.05 -39.58 -0.40 -1.81 16 7 C -0.10 -1.26 9.68 -39.58 -0.38 -1.65 16 8 C -0.06 -0.75 4.37 -104.63 -0.46 -1.21 16 9 C -0.11 -1.13 5.16 -29.04 -0.15 -1.28 16 10 C 0.51 7.40 6.97 -10.98 -0.08 7.32 16 11 O -0.52 -10.26 15.70 5.56 0.09 -10.18 16 12 N -0.73 -9.48 5.08 -53.81 -0.27 -9.75 16 13 C 0.15 2.39 2.28 -67.93 -0.16 2.23 16 14 H 0.10 2.08 5.94 -51.93 -0.31 1.78 16 15 C -0.12 -1.88 5.49 -26.73 -0.15 -2.02 16 16 C -0.11 -1.94 5.77 -26.74 -0.15 -2.09 16 17 C -0.13 -2.38 5.61 -26.73 -0.15 -2.53 16 18 C 0.18 3.45 3.10 -67.93 -0.21 3.24 16 19 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 20 N -0.72 -17.85 4.28 -53.42 -0.23 -18.07 16 21 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -28.65 13.06 55.49 0.72 -27.92 16 25 Si 0.90 22.67 29.55 -169.99 -5.02 17.65 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 C -0.13 -2.00 5.07 -26.73 -0.14 -2.13 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.06 0.41 6.79 -51.93 -0.35 0.05 16 33 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 34 H 0.07 0.84 6.40 -51.93 -0.33 0.51 16 35 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.10 0.83 5.63 -51.93 -0.29 0.53 16 40 H 0.10 0.83 8.05 -51.93 -0.42 0.41 16 41 H 0.39 3.70 8.60 -40.82 -0.35 3.35 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 1.68 7.60 -51.93 -0.39 1.29 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.38 10.33 6.06 -40.82 -0.25 10.08 16 49 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 50 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 LS Contribution 400.81 15.07 6.04 6.04 Total: -1.00 -33.71 400.81 -11.02 -44.73 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -8.58 Total: 13.24 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -3.77 Total: -15.73 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.22 Total: -55.75 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.71 -11.02 -44.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981166766.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.309 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds