Wall clock time and date at job start Tue Mar 31 2020 16:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46944 * 2 1 4 4 C 1.38254 * 120.00273 * 265.23251 * 3 2 1 5 5 C 1.38208 * 119.99793 * 180.25401 * 4 3 2 6 6 C 1.38260 * 120.00228 * 359.78861 * 5 4 3 7 7 C 1.38212 * 119.99826 * 359.96102 * 6 5 4 8 8 C 1.38215 * 119.99548 * 85.00417 * 3 2 1 9 9 C 1.50695 * 120.00304 * 359.97438 * 8 3 2 10 10 C 1.50702 * 109.47135 * 84.73245 * 9 8 3 11 11 O 1.21283 * 119.99466 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00351 * 180.02562 * 10 9 8 13 13 C 1.46491 * 119.99958 * 179.97438 * 12 10 9 14 14 H 1.08991 * 109.47703 * 34.99644 * 13 12 10 15 15 C 1.53001 * 109.47219 * 274.99376 * 13 12 10 16 16 C 1.52996 * 109.47349 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47220 * 60.00418 * 16 15 13 18 18 C 1.53008 * 109.47074 * 300.00109 * 17 16 15 19 19 H 1.08999 * 109.47058 * 179.97438 * 18 17 16 20 20 N 1.46499 * 109.47014 * 299.99808 * 18 17 16 21 21 C 1.36939 * 119.99933 * 275.27473 * 20 18 17 22 22 H 1.08001 * 119.99700 * 359.72658 * 21 20 18 23 23 C 1.38810 * 120.00095 * 179.71972 * 21 20 18 24 24 N 1.31624 * 119.99740 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47173 * 60.00435 * 25 23 21 27 27 H 1.48497 * 109.47172 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47132 * 300.00314 * 25 23 21 29 29 C 1.52999 * 109.46675 * 59.99923 * 18 17 16 30 30 H 1.08997 * 109.47430 * 59.99903 * 1 2 3 31 31 H 1.09010 * 109.46806 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47147 * 299.99824 * 1 2 3 33 33 H 1.09004 * 109.47063 * 240.00507 * 2 1 3 34 34 H 1.08997 * 109.47430 * 120.00097 * 2 1 3 35 35 H 1.08003 * 120.00044 * 0.02562 * 4 3 2 36 36 H 1.08001 * 119.99645 * 179.76829 * 5 4 3 37 37 H 1.07999 * 120.00007 * 179.97438 * 6 5 4 38 38 H 1.07999 * 119.99386 * 179.97438 * 7 6 5 39 39 H 1.08997 * 109.47193 * 324.73207 * 9 8 3 40 40 H 1.09004 * 109.47405 * 204.73103 * 9 8 3 41 41 H 0.97000 * 119.99341 * 359.97438 * 12 10 9 42 42 H 1.09005 * 109.47539 * 300.00558 * 15 13 12 43 43 H 1.09006 * 109.47137 * 60.00177 * 15 13 12 44 44 H 1.08997 * 109.47425 * 180.02562 * 16 15 13 45 45 H 1.08996 * 109.47216 * 300.00101 * 16 15 13 46 46 H 1.08995 * 109.47753 * 179.97438 * 17 16 15 47 47 H 1.09005 * 109.47067 * 59.99557 * 17 16 15 48 48 H 0.97001 * 119.99790 * 94.99446 * 20 18 17 49 49 H 0.96998 * 119.99409 * 179.97438 * 24 23 21 50 50 H 1.08991 * 109.47925 * 60.00288 * 29 18 17 51 51 H 1.09009 * 109.46506 * 180.02562 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3566 2.0395 -1.1931 5 6 2.8222 3.3408 -1.1926 6 6 2.9596 4.0254 0.0007 7 6 2.6305 3.4086 1.1931 8 6 2.1644 2.1071 1.1925 9 6 1.8055 1.4347 2.4925 10 6 2.9822 0.6319 2.9844 11 8 4.0108 0.6078 2.3422 12 7 2.8913 -0.0600 4.1374 13 6 4.0350 -0.8408 4.6152 14 1 4.9600 -0.3251 4.3580 15 6 4.0208 -2.2217 3.9564 16 6 5.2149 -3.0374 4.4559 17 6 5.1245 -3.1963 5.9749 18 6 5.1386 -1.8154 6.6339 19 1 5.0737 -1.9286 7.7160 20 7 6.3822 -1.1223 6.2886 21 6 7.5167 -1.3451 7.0224 22 1 7.4935 -2.0285 7.8584 23 6 8.6965 -0.6928 6.6916 24 7 8.7246 0.1403 5.6730 25 14 10.2439 -0.9963 7.6931 26 1 10.6003 -2.4365 7.6293 27 1 11.3582 -0.1852 7.1403 28 1 10.0031 -0.6079 9.1061 29 6 3.9444 -0.9998 6.1343 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.2495 1.5046 -2.1253 36 1 3.0790 3.8227 -2.1243 37 1 3.3239 5.0421 0.0012 38 1 2.7383 3.9433 2.1252 39 1 0.9539 0.7727 2.3362 40 1 1.5465 2.1911 3.2335 41 1 2.0685 -0.0410 4.6508 42 1 3.0957 -2.7376 4.2137 43 1 4.0848 -2.1086 2.8741 44 1 5.2051 -4.0209 3.9862 45 1 6.1402 -2.5217 4.1990 46 1 5.9749 -3.7778 6.3308 47 1 4.1991 -3.7119 6.2318 48 1 6.4030 -0.5086 5.5376 49 1 9.5490 0.5963 5.4421 50 1 3.0192 -1.5154 6.3912 51 1 3.9548 -0.0159 6.6034 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981166766.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:52 Heat of formation + Delta-G solvation = -46.657195 kcal Electronic energy + Delta-G solvation = -28816.485477 eV Core-core repulsion = 25099.723592 eV Total energy + Delta-G solvation = -3716.761885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.38771 -40.29611 -39.13340 -35.96996 -35.19517 -34.68221 -33.51120 -32.68117 -30.83839 -30.32191 -29.73881 -28.17204 -25.68421 -24.73505 -23.63581 -23.28772 -22.66902 -21.69467 -21.12471 -20.00947 -19.21835 -18.04176 -17.51637 -17.08351 -16.95316 -16.54792 -16.02847 -15.83379 -15.61931 -15.33118 -15.24040 -15.08202 -14.71735 -14.58375 -14.31629 -13.99307 -13.92952 -13.70556 -13.43642 -13.36858 -13.01474 -12.87749 -12.79200 -12.76655 -12.63459 -12.61161 -12.19460 -12.15532 -12.14307 -11.81056 -11.68735 -11.56338 -11.53556 -11.43153 -11.17336 -10.81830 -10.74573 -9.95237 -9.68133 -9.46045 -8.95400 -7.90355 -5.18226 0.43789 0.52262 1.45104 1.48418 1.54441 1.73545 2.26257 2.57677 2.91979 3.42603 3.67722 3.78286 3.86546 3.91009 4.00358 4.04042 4.11395 4.17235 4.22548 4.30391 4.35830 4.38324 4.47176 4.51268 4.54423 4.60727 4.65314 4.71561 4.73895 4.76936 4.78502 4.82850 5.02351 5.04535 5.09529 5.11401 5.18011 5.23520 5.25965 5.32122 5.41939 5.44976 5.49514 5.55062 5.59971 5.63260 5.67805 5.68121 5.75825 6.16001 6.31109 6.68951 7.36510 7.41388 8.16855 8.36985 9.32896 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014514 B = 0.002932 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.672528 B = 9547.937257 C =10681.949676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 C -0.078 4.078 4 C -0.134 4.134 5 C -0.127 4.127 6 C -0.139 4.139 7 C -0.124 4.124 8 C -0.081 4.081 9 C -0.096 4.096 10 C 0.507 3.493 11 O -0.581 6.581 12 N -0.711 5.711 13 C 0.154 3.846 14 H 0.038 0.962 15 C -0.107 4.107 16 C -0.107 4.107 17 C -0.126 4.126 18 C 0.166 3.834 19 H 0.054 0.946 20 N -0.735 5.735 21 C -0.232 4.232 22 H 0.078 0.922 23 C -0.082 4.082 24 N -0.973 5.973 25 Si 0.970 3.030 26 H -0.279 1.279 27 H -0.301 1.301 28 H -0.276 1.276 29 C -0.114 4.114 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.417 0.583 42 H 0.093 0.907 43 H 0.039 0.961 44 H 0.066 0.934 45 H 0.024 0.976 46 H 0.038 0.962 47 H 0.087 0.913 48 H 0.370 0.630 49 H 0.247 0.753 50 H 0.110 0.890 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.344 0.815 -9.050 25.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.078 4.078 4 C -0.152 4.152 5 C -0.144 4.144 6 C -0.157 4.157 7 C -0.142 4.142 8 C -0.081 4.081 9 C -0.135 4.135 10 C 0.294 3.706 11 O -0.460 6.460 12 N -0.364 5.364 13 C 0.048 3.952 14 H 0.056 0.944 15 C -0.146 4.146 16 C -0.145 4.145 17 C -0.166 4.166 18 C 0.058 3.942 19 H 0.072 0.928 20 N -0.376 5.376 21 C -0.364 4.364 22 H 0.096 0.904 23 C -0.274 4.274 24 N -0.625 5.625 25 Si 0.799 3.201 26 H -0.205 1.205 27 H -0.228 1.228 28 H -0.202 1.202 29 C -0.153 4.153 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.254 0.746 42 H 0.111 0.889 43 H 0.058 0.942 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.057 0.943 47 H 0.105 0.895 48 H 0.202 0.798 49 H 0.055 0.945 50 H 0.128 0.872 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.524 0.735 -9.340 25.321 hybrid contribution 1.592 0.415 0.215 1.659 sum -21.931 1.149 -9.125 23.782 Atomic orbital electron populations 1.21736 0.92635 1.02691 1.02640 1.20569 0.97609 0.91780 1.02469 1.19965 0.98547 0.96427 0.92890 1.21274 1.00279 0.95643 0.97960 1.21418 0.99236 0.94971 0.98825 1.21371 1.00656 1.00996 0.92644 1.21268 0.98858 0.95103 0.98941 1.19377 1.00456 0.94242 0.94026 1.20786 0.96503 1.00469 0.95782 1.21166 0.89572 0.79184 0.80640 1.90770 1.33295 1.64434 1.57476 1.45941 1.17204 1.49278 1.23943 1.20675 0.88556 0.91516 0.94403 0.94387 1.21725 0.99315 0.94873 0.98669 1.21288 0.97327 0.99180 0.96726 1.22054 1.01160 0.98428 0.94913 1.20509 0.85226 0.91323 0.97155 0.92848 1.42758 1.06546 1.51903 1.36376 1.19625 0.88887 1.19492 1.08417 0.90403 1.25552 1.01190 1.00534 1.00088 1.69861 1.27076 1.33866 1.31655 0.85258 0.79345 0.77241 0.78225 1.20520 1.22781 1.20191 1.21948 0.99598 1.00924 0.92789 0.92214 0.91104 0.91750 0.91145 0.92357 0.84725 0.84195 0.84625 0.85559 0.85188 0.85672 0.74558 0.88882 0.94166 0.91527 0.95688 0.94288 0.89475 0.79750 0.94471 0.87163 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.72 71.98 0.70 -1.14 16 2 C -0.09 -1.70 5.38 29.85 0.16 -1.54 16 3 C -0.08 -1.84 5.13 -19.87 -0.10 -1.94 16 4 C -0.13 -2.97 9.68 22.27 0.22 -2.75 16 5 C -0.13 -2.72 10.05 22.27 0.22 -2.49 16 6 C -0.14 -3.15 10.05 22.27 0.22 -2.93 16 7 C -0.12 -3.03 9.68 22.27 0.22 -2.81 16 8 C -0.08 -1.95 4.37 -19.87 -0.09 -2.04 16 9 C -0.10 -1.86 5.16 29.10 0.15 -1.71 16 10 C 0.51 14.53 6.97 87.66 0.61 15.14 16 11 O -0.58 -23.96 15.70 -3.04 -0.05 -24.01 16 12 N -0.71 -17.30 5.08 -442.55 -2.25 -19.55 16 13 C 0.15 4.94 2.28 44.99 0.10 5.05 16 14 H 0.04 1.72 5.94 -2.39 -0.01 1.71 16 15 C -0.11 -3.23 5.49 30.59 0.17 -3.06 16 16 C -0.11 -3.74 5.77 30.59 0.18 -3.56 16 17 C -0.13 -4.18 5.61 30.60 0.17 -4.01 16 18 C 0.17 6.22 3.10 44.99 0.14 6.36 16 19 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 20 N -0.73 -37.36 4.28 -322.93 -1.38 -38.74 16 21 C -0.23 -13.06 9.93 84.03 0.83 -12.22 16 22 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 23 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 24 N -0.97 -62.89 13.06 21.65 0.28 -62.61 16 25 Si 0.97 47.75 29.55 68.60 2.03 49.77 16 26 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 27 H -0.30 -15.15 7.11 99.48 0.71 -14.45 16 28 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 29 C -0.11 -3.31 5.07 30.60 0.16 -3.16 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.06 0.74 6.79 -2.39 -0.02 0.72 16 33 H 0.07 1.35 8.05 -2.38 -0.02 1.33 16 34 H 0.06 1.30 6.40 -2.39 -0.02 1.28 16 35 H 0.13 2.40 8.06 -2.91 -0.02 2.37 16 36 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.13 2.76 8.06 -2.91 -0.02 2.73 16 39 H 0.13 1.73 5.63 -2.39 -0.01 1.71 16 40 H 0.13 1.76 8.05 -2.38 -0.02 1.74 16 41 H 0.42 6.27 8.60 -92.71 -0.80 5.47 16 42 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 43 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.02 1.12 7.60 -2.39 -0.02 1.10 16 46 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 48 H 0.37 21.02 6.06 -92.71 -0.56 20.46 16 49 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 50 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 51 H 0.06 1.83 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -79.49 400.81 2.72 -76.76 By element: Atomic # 1 Polarization: 42.03 SS G_CDS: -0.44 Total: 41.59 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 4.53 Total: -23.22 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -3.35 Total: -120.90 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.77 kcal Total: -79.49 2.72 -76.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981166766.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.107 kcal (2) G-P(sol) polarization free energy of solvation -79.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds