Wall clock time and date at job start Tue Mar 31 2020 16:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.46584 * 2 1 4 4 C 1.38256 * 120.00138 * 265.02069 * 3 2 1 5 5 C 1.38208 * 119.99920 * 179.72171 * 4 3 2 6 6 C 1.38260 * 120.00088 * 0.52185 * 5 4 3 7 7 C 1.38212 * 119.99650 * 359.47803 * 6 5 4 8 8 C 1.38216 * 119.99769 * 85.00560 * 3 2 1 9 9 C 1.50701 * 120.00020 * 359.97438 * 8 3 2 10 10 C 1.50703 * 109.47176 * 85.02198 * 9 8 3 11 11 O 1.21274 * 119.99790 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99742 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99770 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47148 * 324.99639 * 13 12 10 15 15 C 1.53002 * 109.47288 * 84.99733 * 13 12 10 16 16 C 1.52994 * 109.47014 * 180.02562 * 15 13 12 17 17 C 1.53009 * 109.47272 * 300.00005 * 16 15 13 18 18 C 1.52995 * 109.46884 * 59.99948 * 17 16 15 19 19 H 1.09003 * 109.46971 * 180.02562 * 18 17 16 20 20 N 1.46497 * 109.47318 * 60.00196 * 18 17 16 21 21 C 1.36937 * 120.00046 * 84.99707 * 20 18 17 22 22 H 1.08004 * 119.99910 * 0.02562 * 21 20 18 23 23 C 1.38813 * 120.00142 * 180.02562 * 21 20 18 24 24 N 1.31623 * 119.99780 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00063 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47064 * 90.00152 * 25 23 21 27 27 H 1.48506 * 109.47307 * 210.00042 * 25 23 21 28 28 H 1.48496 * 109.47457 * 330.00260 * 25 23 21 29 29 C 1.52995 * 109.46851 * 204.99945 * 13 12 10 30 30 H 1.08993 * 109.47248 * 60.00179 * 1 2 3 31 31 H 1.09001 * 109.46840 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47302 * 299.99401 * 1 2 3 33 33 H 1.09004 * 109.47181 * 240.00858 * 2 1 3 34 34 H 1.08999 * 109.47671 * 119.99962 * 2 1 3 35 35 H 1.07999 * 120.00076 * 0.02562 * 4 3 2 36 36 H 1.08004 * 120.00251 * 180.27790 * 5 4 3 37 37 H 1.08002 * 120.00476 * 179.76436 * 6 5 4 38 38 H 1.07999 * 119.99941 * 180.27784 * 7 6 5 39 39 H 1.09000 * 109.47286 * 205.02405 * 9 8 3 40 40 H 1.08999 * 109.47182 * 325.01812 * 9 8 3 41 41 H 0.97003 * 120.00111 * 359.97438 * 12 10 9 42 42 H 1.08994 * 109.46919 * 299.99829 * 15 13 12 43 43 H 1.09000 * 109.46711 * 60.00236 * 15 13 12 44 44 H 1.08996 * 109.47487 * 179.97438 * 16 15 13 45 45 H 1.09002 * 109.47385 * 59.99929 * 16 15 13 46 46 H 1.09002 * 109.46853 * 300.00250 * 17 16 15 47 47 H 1.08998 * 109.47399 * 180.02562 * 17 16 15 48 48 H 0.96999 * 120.00459 * 264.99895 * 20 18 17 49 49 H 0.97003 * 119.99650 * 180.02562 * 24 23 21 50 50 H 1.08997 * 109.47089 * 299.99327 * 29 13 12 51 51 H 1.08999 * 109.47511 * 60.00026 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3606 2.0381 -1.1928 5 6 2.8157 3.3431 -1.1933 6 6 2.9529 4.0278 0.0000 7 6 2.6246 3.4108 1.1924 8 6 2.1643 2.1072 1.1925 9 6 1.8055 1.4347 2.4925 10 6 2.9846 0.6377 2.9880 11 8 4.0150 0.6181 2.3487 12 7 2.8940 -0.0532 4.1417 13 6 4.0405 -0.8275 4.6236 14 1 4.5773 -1.2492 3.7738 15 6 4.9771 0.0871 5.4156 16 6 6.1746 -0.7215 5.9184 17 6 5.6824 -1.8535 6.8225 18 6 4.7458 -2.7680 6.0305 19 1 4.3948 -3.5742 6.6747 20 7 5.4671 -3.3342 4.8880 21 6 6.2228 -4.4650 5.0475 22 1 6.2868 -4.9396 6.0155 23 6 6.9067 -5.0011 3.9650 24 7 7.6326 -6.0883 4.1182 25 14 6.7954 -4.1806 2.2906 26 1 7.8795 -3.1742 2.1595 27 1 6.9406 -5.2060 1.2262 28 1 5.4779 -3.5093 2.1548 29 6 3.5477 -1.9591 5.5278 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8934 -0.5137 -0.8901 34 1 1.8935 -0.5138 0.8899 35 1 2.2568 1.5021 -2.1246 36 1 3.0680 3.8267 -2.1254 37 1 3.3121 5.0463 0.0000 38 1 2.7275 3.9472 2.1242 39 1 1.5415 2.1908 3.2319 40 1 0.9571 0.7688 2.3351 41 1 2.0700 -0.0372 4.6532 42 1 5.3281 0.8932 4.7714 43 1 4.4402 0.5086 6.2655 44 1 6.8421 -0.0699 6.4822 45 1 6.7113 -1.1428 5.0683 46 1 5.1457 -1.4322 7.6726 47 1 6.5356 -2.4293 7.1811 48 1 5.4094 -2.9081 4.0185 49 1 8.1108 -6.4628 3.3619 50 1 3.0110 -1.5375 6.3777 51 1 2.8805 -2.6107 4.9636 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981166767.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:55 Heat of formation + Delta-G solvation = -44.424851 kcal Electronic energy + Delta-G solvation = -29018.139682 eV Core-core repulsion = 25301.474599 eV Total energy + Delta-G solvation = -3716.665083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.43441 -40.36080 -39.21889 -36.08595 -35.23580 -34.72956 -33.55295 -33.02242 -30.95160 -30.42799 -30.06129 -28.20396 -25.39730 -24.77673 -23.65944 -23.35208 -22.69876 -21.75838 -21.15372 -20.04950 -19.78014 -18.08115 -17.59407 -17.09753 -17.02426 -16.52182 -16.07615 -15.95485 -15.75458 -15.60882 -15.13456 -15.01340 -14.71613 -14.57625 -14.38212 -14.14337 -14.01810 -13.88657 -13.78632 -13.43837 -13.09017 -13.00539 -12.96766 -12.81905 -12.67925 -12.51001 -12.23361 -12.19341 -12.18540 -11.86654 -11.73423 -11.61864 -11.58420 -11.52772 -11.25030 -10.91519 -10.79147 -10.00667 -9.70066 -9.48834 -9.28689 -8.05255 -5.34120 0.41605 0.50265 1.28086 1.32675 1.35677 1.68616 2.21532 2.41482 2.89640 3.27620 3.60097 3.65126 3.78582 3.83015 3.91093 3.97640 4.06874 4.08172 4.16402 4.27198 4.32011 4.33935 4.40306 4.45657 4.52472 4.55345 4.63242 4.66100 4.69602 4.73774 4.75297 4.78595 4.97289 5.00206 5.04820 5.09554 5.13398 5.16846 5.22032 5.27253 5.36053 5.40932 5.46704 5.57191 5.57911 5.61341 5.62617 5.73547 5.80301 6.13685 6.21280 6.64452 7.07638 7.35771 7.87036 8.02177 9.16960 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012714 B = 0.003429 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.740449 B = 8164.232439 C = 9078.207089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 C -0.081 4.081 4 C -0.136 4.136 5 C -0.127 4.127 6 C -0.136 4.136 7 C -0.117 4.117 8 C -0.080 4.080 9 C -0.097 4.097 10 C 0.508 3.492 11 O -0.582 6.582 12 N -0.711 5.711 13 C 0.148 3.852 14 H 0.039 0.961 15 C -0.110 4.110 16 C -0.110 4.110 17 C -0.127 4.127 18 C 0.171 3.829 19 H 0.057 0.943 20 N -0.751 5.751 21 C -0.213 4.213 22 H 0.067 0.933 23 C -0.057 4.057 24 N -0.981 5.981 25 Si 0.935 3.065 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.267 1.267 29 C -0.117 4.117 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.129 0.871 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.123 0.877 41 H 0.419 0.581 42 H 0.044 0.956 43 H 0.095 0.905 44 H 0.069 0.931 45 H 0.027 0.973 46 H 0.090 0.910 47 H 0.037 0.963 48 H 0.359 0.641 49 H 0.256 0.744 50 H 0.114 0.886 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.200 22.938 -2.457 30.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.128 4.128 3 C -0.081 4.081 4 C -0.154 4.154 5 C -0.145 4.145 6 C -0.154 4.154 7 C -0.135 4.135 8 C -0.080 4.080 9 C -0.136 4.136 10 C 0.296 3.704 11 O -0.461 6.461 12 N -0.363 5.363 13 C 0.043 3.957 14 H 0.057 0.943 15 C -0.149 4.149 16 C -0.148 4.148 17 C -0.167 4.167 18 C 0.063 3.937 19 H 0.075 0.925 20 N -0.395 5.395 21 C -0.345 4.345 22 H 0.085 0.915 23 C -0.248 4.248 24 N -0.633 5.633 25 Si 0.765 3.235 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.193 1.193 29 C -0.156 4.156 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.147 0.853 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.141 0.859 41 H 0.256 0.744 42 H 0.063 0.937 43 H 0.113 0.887 44 H 0.088 0.912 45 H 0.046 0.954 46 H 0.108 0.892 47 H 0.056 0.944 48 H 0.193 0.807 49 H 0.065 0.935 50 H 0.133 0.867 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.419 22.732 -2.799 30.028 hybrid contribution 0.704 -0.248 -1.274 1.476 sum -18.715 22.485 -4.073 29.536 Atomic orbital electron populations 1.21726 0.92558 1.02535 1.02821 1.20576 0.97764 0.92311 1.02116 1.19928 0.98770 0.96096 0.93310 1.21248 1.00529 0.95866 0.97794 1.21413 0.99277 0.94668 0.99113 1.21397 1.00469 1.01031 0.92458 1.21273 0.98515 0.94601 0.99133 1.19375 1.00474 0.94468 0.93716 1.20794 0.96298 1.00621 0.95909 1.21166 0.89670 0.79321 0.80292 1.90749 1.33490 1.64067 1.57823 1.45940 1.17002 1.49437 1.23938 1.20756 0.87287 0.91627 0.96028 0.94267 1.21764 0.96135 0.97168 0.99825 1.21338 0.97501 0.97000 0.98991 1.22038 0.99738 0.96568 0.98354 1.20498 0.90807 0.93955 0.88423 0.92500 1.42993 1.57979 1.30131 1.08423 1.19105 1.18836 1.00725 0.95807 0.91492 1.25221 1.00595 0.98435 1.00570 1.69833 1.37459 1.24623 1.31379 0.85716 0.78081 0.77557 0.82129 1.21690 1.21871 1.19297 1.22005 0.97595 0.95734 1.00247 0.92066 0.91585 0.91375 0.91687 0.92752 0.85349 0.84318 0.84178 0.84645 0.84764 0.85890 0.74351 0.93743 0.88683 0.91216 0.95374 0.89160 0.94419 0.80738 0.93501 0.86725 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.72 71.98 0.70 -1.36 16 2 C -0.09 -1.92 5.38 29.85 0.16 -1.76 16 3 C -0.08 -1.86 5.13 -19.86 -0.10 -1.96 16 4 C -0.14 -2.96 9.68 22.27 0.22 -2.74 16 5 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 6 C -0.14 -2.58 10.05 22.27 0.22 -2.36 16 7 C -0.12 -2.35 9.68 22.27 0.22 -2.14 16 8 C -0.08 -1.72 4.37 -19.87 -0.09 -1.81 16 9 C -0.10 -1.60 5.16 29.10 0.15 -1.45 16 10 C 0.51 12.81 6.99 87.66 0.61 13.42 16 11 O -0.58 -21.64 15.70 -3.01 -0.05 -21.69 16 12 N -0.71 -14.80 5.08 -442.54 -2.25 -17.05 16 13 C 0.15 4.19 2.28 44.99 0.10 4.29 16 14 H 0.04 1.54 5.94 -2.39 -0.01 1.52 16 15 C -0.11 -2.95 5.49 30.59 0.17 -2.78 16 16 C -0.11 -3.50 5.77 30.60 0.18 -3.33 16 17 C -0.13 -4.01 5.61 30.60 0.17 -3.84 16 18 C 0.17 5.99 3.10 45.01 0.14 6.13 16 19 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 20 N -0.75 -35.30 4.08 -322.86 -1.32 -36.62 16 21 C -0.21 -12.23 10.41 84.03 0.87 -11.36 16 22 H 0.07 4.11 8.06 -2.91 -0.02 4.09 16 23 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 24 N -0.98 -64.35 13.97 21.65 0.30 -64.04 16 25 Si 0.94 49.64 27.73 68.60 1.90 51.54 16 26 H -0.29 -15.53 7.11 99.48 0.71 -14.82 16 27 H -0.29 -15.43 7.11 99.48 0.71 -14.72 16 28 H -0.27 -13.54 6.52 99.48 0.65 -12.90 16 29 C -0.12 -3.01 5.08 30.61 0.16 -2.85 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.83 6.80 -2.39 -0.02 0.81 16 33 H 0.06 1.42 8.05 -2.38 -0.02 1.41 16 34 H 0.05 1.34 6.42 -2.39 -0.02 1.32 16 35 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.13 1.27 8.05 -2.39 -0.02 1.25 16 40 H 0.12 1.52 5.62 -2.39 -0.01 1.51 16 41 H 0.42 4.95 8.60 -92.71 -0.80 4.15 16 42 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.03 1.12 7.60 -2.39 -0.02 1.11 16 46 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.36 17.34 3.92 -92.71 -0.36 16.98 16 49 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 50 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 51 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -80.47 397.72 2.87 -77.61 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -0.30 Total: 31.38 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 4.57 Total: -21.14 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -3.26 Total: -117.71 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.05 Total: -21.69 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 1.90 Total: 51.54 kcal Total: -80.47 2.87 -77.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981166767.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.183 kcal (2) G-P(sol) polarization free energy of solvation -80.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds