Wall clock time and date at job start Tue Mar 31 2020 16:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50687 * 109.47422 * 2 1 4 4 C 1.38262 * 120.00435 * 265.20943 * 3 2 1 5 5 C 1.38210 * 120.00201 * 180.24895 * 4 3 2 6 6 C 1.38265 * 120.00028 * 359.77465 * 5 4 3 7 7 C 1.38218 * 119.99904 * 0.02562 * 6 5 4 8 8 C 1.38217 * 119.99925 * 85.00067 * 3 2 1 9 9 C 1.50700 * 120.00223 * 359.97438 * 8 3 2 10 10 C 1.50700 * 109.46782 * 84.72361 * 9 8 3 11 11 O 1.21280 * 120.00352 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99979 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00270 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47129 * 325.00460 * 13 12 10 15 15 C 1.53002 * 109.46766 * 85.00180 * 13 12 10 16 16 C 1.52997 * 109.47092 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.47445 * 300.00075 * 16 15 13 18 18 C 1.53002 * 109.46711 * 59.99695 * 17 16 15 19 19 H 1.09002 * 109.47070 * 60.00376 * 18 17 16 20 20 N 1.46499 * 109.46799 * 180.02562 * 18 17 16 21 21 C 1.36943 * 119.99899 * 275.00081 * 20 18 17 22 22 H 1.07999 * 119.99910 * 359.97438 * 21 20 18 23 23 C 1.38807 * 119.99996 * 180.02562 * 21 20 18 24 24 N 1.31627 * 119.99922 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00040 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46991 * 90.00891 * 25 23 21 27 27 H 1.48506 * 109.47173 * 210.00494 * 25 23 21 28 28 H 1.48497 * 109.47415 * 330.00626 * 25 23 21 29 29 C 1.53000 * 109.47233 * 300.00001 * 18 17 16 30 30 H 1.09002 * 109.46947 * 60.00088 * 1 2 3 31 31 H 1.09004 * 109.47382 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47320 * 299.99848 * 1 2 3 33 33 H 1.09010 * 109.46907 * 240.00020 * 2 1 3 34 34 H 1.08997 * 109.46852 * 120.00629 * 2 1 3 35 35 H 1.07994 * 119.99817 * 0.04210 * 4 3 2 36 36 H 1.07993 * 120.00387 * 179.79076 * 5 4 3 37 37 H 1.07999 * 120.00289 * 179.97438 * 6 5 4 38 38 H 1.07994 * 119.99983 * 179.97438 * 7 6 5 39 39 H 1.09005 * 109.46679 * 324.73124 * 9 8 3 40 40 H 1.08995 * 109.47770 * 204.72931 * 9 8 3 41 41 H 0.97000 * 120.00239 * 0.02562 * 12 10 9 42 42 H 1.09002 * 109.47067 * 60.00243 * 15 13 12 43 43 H 1.09000 * 109.47312 * 300.00216 * 15 13 12 44 44 H 1.09001 * 109.47375 * 180.02562 * 16 15 13 45 45 H 1.09002 * 109.47497 * 59.99850 * 16 15 13 46 46 H 1.09002 * 109.46589 * 300.00331 * 17 16 15 47 47 H 1.08996 * 109.47165 * 179.97438 * 17 16 15 48 48 H 0.96998 * 120.00630 * 95.00428 * 20 18 17 49 49 H 0.97001 * 119.99255 * 179.97438 * 24 23 21 50 50 H 1.09001 * 109.47194 * 179.97438 * 29 18 17 51 51 H 1.08992 * 109.47399 * 300.00166 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3572 2.0392 -1.1932 5 6 2.8228 3.3405 -1.1927 6 6 2.9595 4.0254 0.0006 7 6 2.6309 3.4085 1.1931 8 6 2.1644 2.1070 1.1924 9 6 1.8055 1.4347 2.4926 10 6 2.9821 0.6317 2.9844 11 8 4.0109 0.6080 2.3427 12 7 2.8910 -0.0602 4.1374 13 6 4.0349 -0.8404 4.6159 14 1 4.5679 -1.2634 3.7643 15 6 4.9774 0.0691 5.4068 16 6 6.1724 -0.7455 5.9060 17 6 5.6771 -1.8763 6.8099 18 6 4.7346 -2.7857 6.0188 19 1 5.2675 -3.2083 5.1670 20 7 4.2599 -3.8681 6.8844 21 6 5.0124 -5.0018 7.0383 22 1 5.9557 -5.0982 6.5212 23 6 4.5624 -6.0277 7.8580 24 7 5.2859 -7.1172 8.0062 25 14 2.9305 -5.8613 8.7518 26 1 1.8415 -6.4007 7.8984 27 1 2.9841 -6.6226 10.0258 28 1 2.6687 -4.4287 9.0419 29 6 3.5395 -1.9711 5.5197 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.2502 1.5043 -2.1252 36 1 3.0797 3.8225 -2.1243 37 1 3.3237 5.0421 0.0011 38 1 2.7380 3.9433 2.1251 39 1 0.9537 0.7727 2.3362 40 1 1.5466 2.1911 3.2334 41 1 2.0680 -0.0416 4.6505 42 1 4.4444 0.4921 6.2584 43 1 5.3306 0.8744 4.7628 44 1 6.8436 -0.0978 6.4699 45 1 6.7053 -1.1682 5.0543 46 1 5.1442 -1.4536 7.6616 47 1 6.5284 -2.4569 7.1651 48 1 3.4125 -3.7819 7.3485 49 1 4.9715 -7.8338 8.5794 50 1 2.8683 -2.6188 4.9558 51 1 3.0067 -1.5485 6.3715 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981166768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:59 Heat of formation + Delta-G solvation = -27.321274 kcal Electronic energy + Delta-G solvation = -28222.379508 eV Core-core repulsion = 24506.456092 eV Total energy + Delta-G solvation = -3715.923416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.52713 -39.36125 -37.92490 -34.80170 -34.52822 -33.41533 -32.75013 -31.34761 -29.90395 -29.55770 -28.40411 -27.34811 -24.10562 -23.54151 -22.65718 -22.01112 -21.36329 -20.60562 -20.28514 -19.53302 -17.68274 -17.02039 -16.74016 -16.32447 -16.11216 -15.27230 -14.90190 -14.61549 -14.53039 -14.08891 -13.93323 -13.83507 -13.73559 -13.60033 -13.43042 -13.18704 -13.07436 -12.73682 -12.45178 -12.28254 -12.24500 -12.07290 -12.00805 -11.52909 -11.27908 -11.03654 -11.02839 -10.97536 -10.91155 -10.87674 -10.44585 -10.30504 -10.21219 -10.04506 -9.71529 -9.59140 -9.02617 -8.97062 -8.90570 -8.76477 -7.28292 -5.77609 -3.13382 1.14061 1.22498 2.59137 3.09786 3.35414 3.37660 3.43638 3.63417 4.37236 4.51546 4.57600 4.66559 4.72709 4.75217 4.88968 4.91636 4.96570 5.02403 5.10729 5.14050 5.25132 5.27297 5.34860 5.40682 5.44146 5.50659 5.59027 5.62009 5.64971 5.69145 5.77760 5.80077 5.81059 5.89523 5.93409 6.00439 6.05712 6.19849 6.25210 6.28194 6.31929 6.37225 6.45884 6.46308 6.55690 6.63692 6.82289 6.87999 7.02072 7.46838 7.99081 8.19847 8.41471 9.19753 9.92110 10.11754 11.40747 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018746 B = 0.002419 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.266730 B =11571.287790 C =12347.744938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.062 4.062 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.126 4.126 7 C -0.105 4.105 8 C -0.062 4.062 9 C -0.108 4.108 10 C 0.513 3.487 11 O -0.529 6.529 12 N -0.727 5.727 13 C 0.150 3.850 14 H 0.088 0.912 15 C -0.124 4.124 16 C -0.115 4.115 17 C -0.137 4.137 18 C 0.188 3.812 19 H 0.057 0.943 20 N -0.748 5.748 21 C -0.241 4.241 22 H 0.091 0.909 23 C 0.003 3.997 24 N -0.934 5.934 25 Si 0.885 3.115 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.278 1.278 29 C -0.133 4.133 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.398 0.602 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.053 0.947 47 H 0.067 0.933 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.069 0.931 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.389 23.240 -14.982 29.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.062 4.062 4 C -0.137 4.137 5 C -0.137 4.137 6 C -0.144 4.144 7 C -0.123 4.123 8 C -0.062 4.062 9 C -0.148 4.148 10 C 0.299 3.701 11 O -0.404 6.404 12 N -0.378 5.378 13 C 0.045 3.955 14 H 0.107 0.893 15 C -0.162 4.162 16 C -0.154 4.154 17 C -0.177 4.177 18 C 0.078 3.922 19 H 0.075 0.925 20 N -0.390 5.390 21 C -0.371 4.371 22 H 0.108 0.892 23 C -0.193 4.193 24 N -0.582 5.582 25 Si 0.715 3.285 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.204 1.204 29 C -0.172 4.172 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.232 0.768 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.193 0.807 49 H 0.069 0.931 50 H 0.088 0.912 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.462 23.002 -15.465 29.288 hybrid contribution -1.468 0.071 1.099 1.835 sum -10.930 23.073 -14.366 29.295 Atomic orbital electron populations 1.21776 0.94663 1.01949 1.02057 1.20580 0.95956 0.92820 1.03343 1.19679 0.98218 0.95692 0.92618 1.20985 1.00123 0.95200 0.97369 1.21102 0.99691 0.94847 0.98018 1.21057 1.00811 0.99948 0.92561 1.20960 0.98695 0.94498 0.98143 1.19098 1.00066 0.93994 0.93076 1.20772 0.97870 1.00118 0.96059 1.20453 0.89333 0.79669 0.80659 1.90738 1.31008 1.62470 1.56209 1.46182 1.17278 1.50244 1.24085 1.20988 0.86377 0.90916 0.97208 0.89342 1.21882 0.96804 0.98245 0.99304 1.21483 0.96698 0.97428 0.99748 1.22255 1.00806 0.96268 0.98385 1.20072 0.91732 0.87502 0.92877 0.92475 1.42771 1.23703 1.17233 1.55335 1.19078 1.02636 0.91926 1.23497 0.89158 1.24682 0.98174 0.96327 1.00076 1.69707 1.38444 1.07373 1.42651 0.86546 0.85076 0.77148 0.79700 1.21156 1.21805 1.20380 1.22126 0.99915 0.96376 0.98750 0.92498 0.92147 0.92570 0.90896 0.90918 0.86214 0.86267 0.86233 0.86310 0.87810 0.88170 0.76850 0.92173 0.92129 0.92383 0.91990 0.92803 0.91412 0.80749 0.93083 0.91249 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.72 37.16 0.36 -0.69 16 2 C -0.09 -0.82 5.38 -27.89 -0.15 -0.97 16 3 C -0.06 -0.64 5.13 -104.63 -0.54 -1.17 16 4 C -0.12 -1.14 9.68 -39.58 -0.38 -1.52 16 5 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 6 C -0.13 -1.14 10.05 -39.58 -0.40 -1.54 16 7 C -0.10 -1.02 9.68 -39.58 -0.38 -1.41 16 8 C -0.06 -0.63 4.37 -104.62 -0.46 -1.09 16 9 C -0.11 -0.92 5.16 -29.03 -0.15 -1.07 16 10 C 0.51 6.02 6.97 -10.99 -0.08 5.94 16 11 O -0.53 -8.44 15.70 5.56 0.09 -8.36 16 12 N -0.73 -7.70 5.08 -53.80 -0.27 -7.98 16 13 C 0.15 1.96 2.45 -67.93 -0.17 1.80 16 14 H 0.09 1.36 7.58 -51.93 -0.39 0.96 16 15 C -0.12 -1.60 5.49 -26.73 -0.15 -1.75 16 16 C -0.11 -1.61 5.92 -26.73 -0.16 -1.77 16 17 C -0.14 -2.32 5.50 -26.73 -0.15 -2.47 16 18 C 0.19 3.47 2.77 -67.93 -0.19 3.29 16 19 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 20 N -0.75 -17.19 4.92 -53.42 -0.26 -17.45 16 21 C -0.24 -6.71 10.41 -15.06 -0.16 -6.86 16 22 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 23 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 24 N -0.93 -29.20 13.97 55.49 0.78 -28.42 16 25 Si 0.88 21.81 27.73 -169.99 -4.71 17.09 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 29 C -0.13 -1.92 4.86 -26.73 -0.13 -2.05 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.37 6.79 -51.93 -0.35 0.02 16 33 H 0.07 0.64 8.05 -51.92 -0.42 0.22 16 34 H 0.07 0.76 6.40 -51.93 -0.33 0.42 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.10 0.71 5.63 -51.93 -0.29 0.42 16 40 H 0.10 0.62 8.05 -51.93 -0.42 0.20 16 41 H 0.40 3.12 8.60 -40.82 -0.35 2.77 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.36 8.08 5.66 -40.82 -0.23 7.85 16 49 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 50 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 402.12 15.07 6.06 6.06 Total: -1.00 -33.68 402.12 -10.81 -44.49 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -8.72 Total: 9.37 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -3.76 Total: -14.81 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.24 Total: -53.85 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.09 Total: -8.36 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.68 -10.81 -44.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981166768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.171 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds