Wall clock time and date at job start Tue Mar 31 2020 16:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50687 * 109.47422 * 2 1 4 4 C 1.38262 * 120.00435 * 265.20943 * 3 2 1 5 5 C 1.38210 * 120.00201 * 180.24895 * 4 3 2 6 6 C 1.38265 * 120.00028 * 359.77465 * 5 4 3 7 7 C 1.38218 * 119.99904 * 0.02562 * 6 5 4 8 8 C 1.38217 * 119.99925 * 85.00067 * 3 2 1 9 9 C 1.50700 * 120.00223 * 359.97438 * 8 3 2 10 10 C 1.50700 * 109.46782 * 84.72361 * 9 8 3 11 11 O 1.21280 * 120.00352 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99979 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00270 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47129 * 325.00460 * 13 12 10 15 15 C 1.53002 * 109.46766 * 85.00180 * 13 12 10 16 16 C 1.52997 * 109.47092 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.47445 * 300.00075 * 16 15 13 18 18 C 1.53002 * 109.46711 * 59.99695 * 17 16 15 19 19 H 1.09002 * 109.47070 * 60.00376 * 18 17 16 20 20 N 1.46499 * 109.46799 * 180.02562 * 18 17 16 21 21 C 1.36943 * 119.99899 * 275.00081 * 20 18 17 22 22 H 1.07999 * 119.99910 * 359.97438 * 21 20 18 23 23 C 1.38807 * 119.99996 * 180.02562 * 21 20 18 24 24 N 1.31627 * 119.99922 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00040 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46991 * 90.00891 * 25 23 21 27 27 H 1.48506 * 109.47173 * 210.00494 * 25 23 21 28 28 H 1.48497 * 109.47415 * 330.00626 * 25 23 21 29 29 C 1.53000 * 109.47233 * 300.00001 * 18 17 16 30 30 H 1.09002 * 109.46947 * 60.00088 * 1 2 3 31 31 H 1.09004 * 109.47382 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47320 * 299.99848 * 1 2 3 33 33 H 1.09010 * 109.46907 * 240.00020 * 2 1 3 34 34 H 1.08997 * 109.46852 * 120.00629 * 2 1 3 35 35 H 1.07994 * 119.99817 * 0.04210 * 4 3 2 36 36 H 1.07993 * 120.00387 * 179.79076 * 5 4 3 37 37 H 1.07999 * 120.00289 * 179.97438 * 6 5 4 38 38 H 1.07994 * 119.99983 * 179.97438 * 7 6 5 39 39 H 1.09005 * 109.46679 * 324.73124 * 9 8 3 40 40 H 1.08995 * 109.47770 * 204.72931 * 9 8 3 41 41 H 0.97000 * 120.00239 * 0.02562 * 12 10 9 42 42 H 1.09002 * 109.47067 * 60.00243 * 15 13 12 43 43 H 1.09000 * 109.47312 * 300.00216 * 15 13 12 44 44 H 1.09001 * 109.47375 * 180.02562 * 16 15 13 45 45 H 1.09002 * 109.47497 * 59.99850 * 16 15 13 46 46 H 1.09002 * 109.46589 * 300.00331 * 17 16 15 47 47 H 1.08996 * 109.47165 * 179.97438 * 17 16 15 48 48 H 0.96998 * 120.00630 * 95.00428 * 20 18 17 49 49 H 0.97001 * 119.99255 * 179.97438 * 24 23 21 50 50 H 1.09001 * 109.47194 * 179.97438 * 29 18 17 51 51 H 1.08992 * 109.47399 * 300.00166 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3572 2.0392 -1.1932 5 6 2.8228 3.3405 -1.1927 6 6 2.9595 4.0254 0.0006 7 6 2.6309 3.4085 1.1931 8 6 2.1644 2.1070 1.1924 9 6 1.8055 1.4347 2.4926 10 6 2.9821 0.6317 2.9844 11 8 4.0109 0.6080 2.3427 12 7 2.8910 -0.0602 4.1374 13 6 4.0349 -0.8404 4.6159 14 1 4.5679 -1.2634 3.7643 15 6 4.9774 0.0691 5.4068 16 6 6.1724 -0.7455 5.9060 17 6 5.6771 -1.8763 6.8099 18 6 4.7346 -2.7857 6.0188 19 1 5.2675 -3.2083 5.1670 20 7 4.2599 -3.8681 6.8844 21 6 5.0124 -5.0018 7.0383 22 1 5.9557 -5.0982 6.5212 23 6 4.5624 -6.0277 7.8580 24 7 5.2859 -7.1172 8.0062 25 14 2.9305 -5.8613 8.7518 26 1 1.8415 -6.4007 7.8984 27 1 2.9841 -6.6226 10.0258 28 1 2.6687 -4.4287 9.0419 29 6 3.5395 -1.9711 5.5197 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.2502 1.5043 -2.1252 36 1 3.0797 3.8225 -2.1243 37 1 3.3237 5.0421 0.0011 38 1 2.7380 3.9433 2.1251 39 1 0.9537 0.7727 2.3362 40 1 1.5466 2.1911 3.2334 41 1 2.0680 -0.0416 4.6505 42 1 4.4444 0.4921 6.2584 43 1 5.3306 0.8744 4.7628 44 1 6.8436 -0.0978 6.4699 45 1 6.7053 -1.1682 5.0543 46 1 5.1442 -1.4536 7.6616 47 1 6.5284 -2.4569 7.1651 48 1 3.4125 -3.7819 7.3485 49 1 4.9715 -7.8338 8.5794 50 1 2.8683 -2.6188 4.9558 51 1 3.0067 -1.5485 6.3715 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981166768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:57 Heat of formation + Delta-G solvation = -47.431750 kcal Electronic energy + Delta-G solvation = -28223.251564 eV Core-core repulsion = 24506.456092 eV Total energy + Delta-G solvation = -3716.795472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.38499 -40.26484 -39.11241 -36.31832 -35.19747 -34.79455 -33.53955 -33.21377 -30.94874 -30.35922 -29.84717 -28.17228 -25.42244 -24.74130 -23.63787 -23.11911 -22.45105 -21.55413 -21.26169 -20.83409 -19.57715 -18.01059 -17.61406 -17.12194 -17.01445 -16.44039 -16.08457 -15.91761 -15.58837 -15.38610 -15.08225 -14.92473 -14.80761 -14.60012 -14.50330 -14.33855 -13.96122 -13.84972 -13.78126 -13.46730 -13.07383 -12.97726 -12.87571 -12.78541 -12.64827 -12.35952 -12.17884 -12.15761 -12.04566 -11.80387 -11.69414 -11.66111 -11.55888 -11.49014 -11.43737 -10.91854 -10.81126 -10.00911 -9.66840 -9.45656 -9.30444 -8.00733 -5.34731 0.44932 0.53663 1.38611 1.43504 1.50828 1.70558 2.21342 2.50362 2.92420 3.29923 3.46543 3.68786 3.84389 3.87163 3.94233 4.01917 4.04128 4.11571 4.22902 4.27586 4.31131 4.35998 4.39632 4.49678 4.52246 4.55482 4.56093 4.65143 4.66453 4.73196 4.74988 4.77190 4.97887 5.03499 5.08211 5.12289 5.14862 5.18418 5.19552 5.25175 5.34590 5.39506 5.48253 5.50952 5.61060 5.63119 5.65131 5.77075 5.79008 6.16873 6.23120 6.64299 7.09626 7.34551 7.84686 8.05708 9.21007 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018746 B = 0.002419 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.266730 B =11571.287790 C =12347.744938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.079 4.079 4 C -0.135 4.135 5 C -0.127 4.127 6 C -0.136 4.136 7 C -0.118 4.118 8 C -0.079 4.079 9 C -0.100 4.100 10 C 0.514 3.486 11 O -0.576 6.576 12 N -0.714 5.714 13 C 0.158 3.842 14 H 0.061 0.939 15 C -0.114 4.114 16 C -0.108 4.108 17 C -0.128 4.128 18 C 0.180 3.820 19 H 0.032 0.968 20 N -0.749 5.749 21 C -0.228 4.228 22 H 0.050 0.950 23 C -0.070 4.070 24 N -0.987 5.987 25 Si 0.960 3.040 26 H -0.278 1.278 27 H -0.299 1.299 28 H -0.246 1.246 29 C -0.118 4.118 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.122 0.878 40 H 0.130 0.870 41 H 0.416 0.584 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.050 0.950 46 H 0.065 0.935 47 H 0.035 0.965 48 H 0.367 0.633 49 H 0.257 0.743 50 H 0.069 0.931 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.237 26.126 -14.467 32.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 C -0.079 4.079 4 C -0.153 4.153 5 C -0.144 4.144 6 C -0.154 4.154 7 C -0.136 4.136 8 C -0.079 4.079 9 C -0.140 4.140 10 C 0.301 3.699 11 O -0.455 6.455 12 N -0.366 5.366 13 C 0.053 3.947 14 H 0.079 0.921 15 C -0.153 4.153 16 C -0.147 4.147 17 C -0.168 4.168 18 C 0.071 3.929 19 H 0.050 0.950 20 N -0.392 5.392 21 C -0.359 4.359 22 H 0.068 0.932 23 C -0.260 4.260 24 N -0.638 5.638 25 Si 0.787 3.213 26 H -0.204 1.204 27 H -0.226 1.226 28 H -0.170 1.170 29 C -0.157 4.157 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.140 0.860 40 H 0.148 0.852 41 H 0.253 0.747 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.054 0.946 48 H 0.201 0.799 49 H 0.066 0.934 50 H 0.087 0.913 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.350 25.954 -14.960 32.403 hybrid contribution -0.448 -0.808 0.821 1.236 sum -12.799 25.146 -14.139 31.561 Atomic orbital electron populations 1.21745 0.93058 1.02473 1.02643 1.20559 0.97331 0.92249 1.02396 1.19919 0.98679 0.96163 0.93155 1.21248 1.00383 0.95805 0.97815 1.21411 0.99242 0.94777 0.99016 1.21384 1.00559 1.00944 0.92497 1.21262 0.98597 0.94679 0.99068 1.19350 1.00475 0.94431 0.93691 1.20797 0.96601 1.00572 0.95984 1.21011 0.89548 0.79213 0.80085 1.90726 1.33110 1.64117 1.57527 1.45973 1.17215 1.49337 1.24064 1.20673 0.87169 0.90880 0.95999 0.92087 1.21796 0.96120 0.97615 0.99759 1.21415 0.97609 0.96742 0.98937 1.22084 0.99292 0.96468 0.98947 1.20271 0.93776 0.87146 0.91658 0.94972 1.42720 1.23497 1.16895 1.56118 1.18988 1.01466 0.93501 1.21986 0.93155 1.25578 1.02751 0.95980 1.01735 1.69911 1.41019 1.08628 1.44211 0.85337 0.79658 0.78714 0.77600 1.20385 1.22622 1.17006 1.21923 0.97903 0.96171 0.99687 0.92177 0.91613 0.91711 0.91282 0.92412 0.85194 0.84375 0.84352 0.84880 0.86036 0.85220 0.74720 0.90118 0.92399 0.90654 0.93109 0.91674 0.94562 0.79907 0.93440 0.91264 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.72 71.98 0.70 -1.10 16 2 C -0.09 -1.55 5.38 29.85 0.16 -1.39 16 3 C -0.08 -1.56 5.13 -19.87 -0.10 -1.66 16 4 C -0.13 -2.48 9.68 22.27 0.22 -2.27 16 5 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 6 C -0.14 -2.26 10.05 22.27 0.22 -2.04 16 7 C -0.12 -2.10 9.68 22.27 0.22 -1.88 16 8 C -0.08 -1.49 4.37 -19.86 -0.09 -1.58 16 9 C -0.10 -1.44 5.16 29.10 0.15 -1.29 16 10 C 0.51 11.08 6.97 87.66 0.61 11.69 16 11 O -0.58 -18.13 15.70 -3.03 -0.05 -18.18 16 12 N -0.71 -13.16 5.08 -442.53 -2.25 -15.41 16 13 C 0.16 3.88 2.45 44.99 0.11 3.99 16 14 H 0.06 1.87 7.58 -2.39 -0.02 1.85 16 15 C -0.11 -2.68 5.49 30.59 0.17 -2.51 16 16 C -0.11 -2.92 5.92 30.60 0.18 -2.74 16 17 C -0.13 -4.25 5.50 30.60 0.17 -4.08 16 18 C 0.18 6.59 2.77 44.99 0.12 6.71 16 19 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 20 N -0.75 -33.93 4.92 -322.94 -1.59 -35.52 16 21 C -0.23 -13.00 10.41 84.03 0.87 -12.13 16 22 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 23 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 24 N -0.99 -63.72 13.97 21.65 0.30 -63.42 16 25 Si 0.96 44.68 27.73 68.60 1.90 46.58 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 27 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 28 H -0.25 -10.04 6.52 99.48 0.65 -9.39 16 29 C -0.12 -3.15 4.86 30.59 0.15 -3.00 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.06 0.70 6.79 -2.39 -0.02 0.68 16 33 H 0.07 1.22 8.05 -2.38 -0.02 1.20 16 34 H 0.06 1.17 6.40 -2.39 -0.02 1.16 16 35 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 39 H 0.12 1.30 5.63 -2.38 -0.01 1.29 16 40 H 0.13 1.09 8.05 -2.39 -0.02 1.07 16 41 H 0.42 4.82 8.60 -92.71 -0.80 4.02 16 42 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 47 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.37 15.53 5.66 -92.71 -0.52 15.01 16 49 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 50 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 51 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -76.27 402.12 2.41 -73.85 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: -0.46 Total: 32.89 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 4.55 Total: -20.80 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -3.53 Total: -114.35 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.05 Total: -18.18 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.90 Total: 46.58 kcal Total: -76.27 2.41 -73.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981166768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.422 kcal (2) G-P(sol) polarization free energy of solvation -76.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds