Wall clock time and date at job start Tue Mar 31 2020 16:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50706 * 109.47049 * 2 1 4 4 C 1.38247 * 120.00006 * 270.02326 * 3 2 1 5 5 C 1.38217 * 120.00080 * 179.97438 * 4 3 2 6 6 C 1.38261 * 119.99807 * 359.81397 * 5 4 3 7 7 C 1.38211 * 119.99677 * 0.41990 * 6 5 4 8 8 C 1.50705 * 120.00037 * 179.81234 * 7 6 5 9 9 C 1.50705 * 109.46783 * 269.72640 * 8 7 6 10 10 O 1.21280 * 119.99748 * 359.97438 * 9 8 7 11 11 N 1.34769 * 119.99510 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99798 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47068 * 34.99973 * 12 11 9 14 14 C 1.52997 * 109.47212 * 274.99913 * 12 11 9 15 15 C 1.52992 * 109.47482 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47106 * 60.00162 * 15 14 12 17 17 C 1.53002 * 109.47128 * 300.00123 * 16 15 14 18 18 H 1.09002 * 109.47097 * 299.99925 * 17 16 15 19 19 N 1.46497 * 109.47499 * 180.02562 * 17 16 15 20 20 C 1.36933 * 120.00285 * 84.99720 * 19 17 16 21 21 H 1.08002 * 120.00189 * 0.02562 * 20 19 17 22 22 C 1.38815 * 119.99870 * 180.02562 * 20 19 17 23 23 N 1.31618 * 120.00111 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99637 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47095 * 60.00055 * 24 22 20 26 26 H 1.48504 * 109.46600 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46888 * 299.99905 * 24 22 20 28 28 C 1.52997 * 109.46978 * 59.99726 * 17 16 15 29 29 C 1.38215 * 119.99636 * 90.00147 * 3 2 1 30 30 H 1.08996 * 109.46681 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47014 * 299.99669 * 1 2 3 32 32 H 1.08997 * 109.47156 * 59.99529 * 1 2 3 33 33 H 1.08996 * 109.46849 * 240.00132 * 2 1 3 34 34 H 1.08998 * 109.47438 * 120.00004 * 2 1 3 35 35 H 1.08001 * 120.00610 * 359.97438 * 4 3 2 36 36 H 1.08003 * 119.99976 * 180.02562 * 5 4 3 37 37 H 1.07994 * 120.00044 * 180.22980 * 6 5 4 38 38 H 1.08995 * 109.47048 * 149.72105 * 8 7 6 39 39 H 1.09000 * 109.46576 * 29.72032 * 8 7 6 40 40 H 0.97005 * 120.00963 * 359.97438 * 11 9 8 41 41 H 1.09002 * 109.47153 * 300.00008 * 14 12 11 42 42 H 1.08998 * 109.47533 * 59.99637 * 14 12 11 43 43 H 1.09002 * 109.47103 * 300.00247 * 15 14 12 44 44 H 1.08996 * 109.47747 * 179.97438 * 15 14 12 45 45 H 1.08996 * 109.47407 * 180.02562 * 16 15 14 46 46 H 1.09002 * 109.47596 * 60.00070 * 16 15 14 47 47 H 0.97003 * 119.99356 * 265.00348 * 19 17 16 48 48 H 0.96997 * 119.99796 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.47140 * 180.02562 * 28 17 16 50 50 H 1.09002 * 109.47497 * 60.00450 * 28 17 16 51 51 H 1.08001 * 119.99851 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2623 2.0727 -1.1972 5 6 2.7225 3.3760 -1.1973 6 6 2.9492 4.0291 0.0001 7 6 2.7239 3.3757 1.1970 8 6 2.9750 4.0861 2.5022 9 6 4.3983 3.8489 2.9374 10 8 5.1357 3.1695 2.2552 11 7 4.8513 4.3917 4.0847 12 6 6.2347 4.1607 4.5081 13 1 6.8805 4.1163 3.6311 14 6 6.3201 2.8378 5.2720 15 6 7.7649 2.5962 5.7136 16 6 8.2183 3.7402 6.6228 17 6 8.1329 5.0632 5.8590 18 1 8.7784 5.0186 4.9818 19 7 8.5677 6.1586 6.7293 20 6 9.8992 6.4589 6.8387 21 1 10.6289 5.8886 6.2831 22 6 10.3111 7.4965 7.6638 23 7 9.4218 8.1913 8.3413 24 14 12.1274 7.9067 7.8125 25 1 12.6624 8.2760 6.4774 26 1 12.3025 9.0459 8.7489 27 1 12.8612 6.7239 8.3299 28 6 6.6882 5.3047 5.4173 29 6 2.2627 2.0724 1.1970 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0824 1.5637 -2.1326 36 1 2.9018 3.8854 -2.1326 37 1 3.3053 5.0487 0.0001 38 1 2.2940 3.7022 3.2617 39 1 2.8084 5.1553 2.3717 40 1 4.2616 4.9354 4.6303 41 1 5.6743 2.8823 6.1490 42 1 5.9975 2.0227 4.6243 43 1 8.4103 2.5516 4.8364 44 1 7.8257 1.6540 6.2582 45 1 9.2477 3.5684 6.9371 46 1 7.5729 3.7849 7.5001 47 1 7.9122 6.6710 7.2280 48 1 9.7097 8.9165 8.9175 49 1 6.6274 6.2470 4.8728 50 1 6.0426 5.3494 6.2945 51 1 2.0823 1.5633 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981177476.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:00 Heat of formation + Delta-G solvation = -52.504604 kcal Electronic energy + Delta-G solvation = -27528.524952 eV Core-core repulsion = 23811.509505 eV Total energy + Delta-G solvation = -3717.015447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.24897 -40.21691 -39.13024 -36.23129 -35.29411 -34.79189 -33.35791 -32.90682 -30.89608 -30.31715 -29.51672 -28.14880 -25.70437 -24.78370 -23.64415 -23.11136 -22.56657 -21.56628 -21.14700 -20.60202 -19.17003 -17.95303 -17.58507 -17.23626 -16.77054 -16.45686 -16.02839 -15.90656 -15.61226 -15.38955 -15.05829 -15.03395 -14.76859 -14.56950 -14.48579 -14.22793 -13.96742 -13.78133 -13.58725 -13.40454 -12.97129 -12.90402 -12.82676 -12.76715 -12.58438 -12.28549 -12.16999 -12.12869 -12.05227 -11.96903 -11.68770 -11.63967 -11.61611 -11.48364 -11.37525 -10.87680 -10.79978 -10.00706 -9.65995 -9.47656 -8.99804 -7.93892 -5.21603 0.44388 0.53185 1.47018 1.49260 1.55301 1.70571 2.21874 2.56769 2.92202 3.39083 3.63927 3.70035 3.84095 3.87021 3.98364 4.02247 4.07903 4.25013 4.28401 4.30927 4.32367 4.40497 4.46213 4.52199 4.54385 4.57738 4.59655 4.63763 4.68033 4.71375 4.76454 4.80683 5.01865 5.03987 5.10319 5.13414 5.17303 5.21369 5.21902 5.25141 5.35297 5.39661 5.49879 5.50755 5.55008 5.59643 5.66233 5.68746 5.75084 6.16377 6.28778 6.64088 7.33597 7.35153 8.10873 8.35003 9.29105 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025695 B = 0.001953 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.455182 B =14335.933833 C =14745.023937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.092 4.092 4 C -0.131 4.131 5 C -0.126 4.126 6 C -0.129 4.129 7 C -0.075 4.075 8 C -0.097 4.097 9 C 0.513 3.487 10 O -0.579 6.579 11 N -0.715 5.715 12 C 0.159 3.841 13 H 0.063 0.937 14 C -0.114 4.114 15 C -0.107 4.107 16 C -0.126 4.126 17 C 0.176 3.824 18 H 0.033 0.967 19 N -0.735 5.735 20 C -0.239 4.239 21 H 0.071 0.929 22 C -0.074 4.074 23 N -0.967 5.967 24 Si 0.969 3.031 25 H -0.280 1.280 26 H -0.295 1.295 27 H -0.280 1.280 28 C -0.114 4.114 29 C -0.119 4.119 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.415 0.585 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.040 0.960 46 H 0.055 0.945 47 H 0.374 0.626 48 H 0.251 0.749 49 H 0.060 0.940 50 H 0.077 0.923 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.753 -14.211 -15.768 30.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.149 4.149 5 C -0.144 4.144 6 C -0.147 4.147 7 C -0.075 4.075 8 C -0.136 4.136 9 C 0.301 3.699 10 O -0.458 6.458 11 N -0.366 5.366 12 C 0.054 3.946 13 H 0.081 0.919 14 C -0.153 4.153 15 C -0.146 4.146 16 C -0.166 4.166 17 C 0.067 3.933 18 H 0.051 0.949 19 N -0.374 5.374 20 C -0.371 4.371 21 H 0.089 0.911 22 C -0.266 4.266 23 N -0.618 5.618 24 Si 0.798 3.202 25 H -0.207 1.207 26 H -0.221 1.221 27 H -0.206 1.206 28 C -0.152 4.152 29 C -0.137 4.137 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.252 0.748 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.059 0.941 46 H 0.073 0.927 47 H 0.206 0.794 48 H 0.059 0.941 49 H 0.079 0.921 50 H 0.095 0.905 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -21.046 -14.676 -16.281 30.387 hybrid contribution 0.965 1.029 0.742 1.595 sum -20.080 -13.647 -15.539 28.825 Atomic orbital electron populations 1.21713 0.93781 1.02388 1.02021 1.20580 0.96885 0.91559 1.03214 1.20139 0.98857 0.97082 0.93084 1.21270 1.00274 0.95138 0.98173 1.21366 0.99266 0.95335 0.98462 1.21218 1.00327 1.00676 0.92512 1.19499 0.98923 0.94724 0.94366 1.20743 0.92600 1.04044 0.96193 1.21082 0.90355 0.78457 0.80051 1.90714 1.59572 1.40461 1.55077 1.46012 1.13267 1.53325 1.24032 1.20689 0.82858 0.94577 0.96505 0.91911 1.21788 0.97198 0.96403 0.99912 1.21414 0.95866 0.98185 0.99106 1.22091 1.00161 0.95586 0.98767 1.20311 0.93391 0.87621 0.91954 0.94895 1.42550 1.04476 1.37306 1.53116 1.19543 0.85455 1.11518 1.20610 0.91118 1.25491 1.01479 0.99265 1.00408 1.69791 1.33838 1.24420 1.33739 0.85284 0.80520 0.77149 0.77259 1.20655 1.22068 1.20580 1.21863 0.96551 0.97466 0.99350 1.21052 1.00192 0.94170 0.98249 0.91248 0.92826 0.92619 0.90437 0.91058 0.84689 0.84570 0.85656 0.85284 0.85627 0.74801 0.90597 0.92258 0.92671 0.90652 0.94137 0.92660 0.79384 0.94061 0.92105 0.90468 0.85652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.90 71.98 0.71 -0.80 16 2 C -0.09 -1.14 6.06 29.85 0.18 -0.96 16 3 C -0.09 -1.65 5.13 -19.87 -0.10 -1.75 16 4 C -0.13 -2.30 9.70 22.27 0.22 -2.08 16 5 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 6 C -0.13 -2.57 9.70 22.27 0.22 -2.36 16 7 C -0.07 -1.47 4.37 -19.86 -0.09 -1.56 16 8 C -0.10 -1.46 5.83 29.11 0.17 -1.29 16 9 C 0.51 11.84 7.79 87.66 0.68 12.52 16 10 O -0.58 -19.00 15.70 -3.03 -0.05 -19.05 16 11 N -0.71 -14.84 5.08 -442.53 -2.25 -17.09 16 12 C 0.16 4.26 2.45 44.99 0.11 4.37 16 13 H 0.06 2.02 7.58 -2.39 -0.02 2.00 16 14 C -0.11 -2.89 5.49 30.59 0.17 -2.72 16 15 C -0.11 -2.97 5.92 30.59 0.18 -2.79 16 16 C -0.13 -4.39 5.50 30.60 0.17 -4.22 16 17 C 0.18 6.86 2.77 44.99 0.12 6.98 16 18 H 0.03 1.38 8.08 -2.39 -0.02 1.36 16 19 N -0.73 -36.55 5.12 -322.94 -1.65 -38.20 16 20 C -0.24 -13.32 9.93 84.03 0.83 -12.48 16 21 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 22 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 23 N -0.97 -58.66 13.06 21.65 0.28 -58.37 16 24 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 25 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 26 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 28 C -0.11 -3.47 4.86 30.59 0.15 -3.32 16 29 C -0.12 -2.29 9.36 22.27 0.21 -2.09 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 34 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 35 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.13 1.24 8.09 -2.39 -0.02 1.22 16 39 H 0.13 1.33 8.08 -2.39 -0.02 1.31 16 40 H 0.42 6.02 8.60 -92.70 -0.80 5.22 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.37 19.70 7.80 -92.71 -0.72 18.98 16 48 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 49 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 51 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -71.58 412.48 2.37 -69.21 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: -0.62 Total: 35.54 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: 4.62 Total: -20.41 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -3.62 Total: -113.66 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.05 Total: -19.05 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -71.58 2.37 -69.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981177476.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.707 kcal (2) G-P(sol) polarization free energy of solvation -71.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds