Wall clock time and date at job start Tue Mar 31 2020 16:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47040 * 2 1 4 4 C 1.38266 * 119.99741 * 270.02298 * 3 2 1 5 5 C 1.38212 * 119.99495 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.00271 * 359.77052 * 5 4 3 7 7 C 1.38221 * 120.00018 * 0.46456 * 6 5 4 8 8 C 1.50695 * 120.00078 * 179.79027 * 7 6 5 9 9 C 1.50702 * 109.47135 * 269.72403 * 8 7 6 10 10 O 1.21283 * 119.99466 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00351 * 180.02562 * 9 8 7 12 12 C 1.46491 * 119.99958 * 179.97438 * 11 9 8 13 13 H 1.08991 * 109.47703 * 34.99644 * 12 11 9 14 14 C 1.53001 * 109.47219 * 274.99376 * 12 11 9 15 15 C 1.52996 * 109.47349 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47220 * 60.00418 * 15 14 12 17 17 C 1.53008 * 109.47074 * 300.00109 * 16 15 14 18 18 H 1.08999 * 109.47058 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47014 * 299.99808 * 17 16 15 20 20 C 1.36939 * 119.99933 * 275.27473 * 19 17 16 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 17 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 17 23 23 N 1.31612 * 120.00054 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99751 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47517 * 89.99708 * 24 22 20 26 26 H 1.48502 * 109.46736 * 209.99481 * 24 22 20 27 27 H 1.48496 * 109.47375 * 329.99177 * 24 22 20 28 28 C 1.52999 * 109.46675 * 59.99923 * 17 16 15 29 29 C 1.38204 * 120.00120 * 90.00170 * 3 2 1 30 30 H 1.09000 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47175 * 299.99867 * 1 2 3 32 32 H 1.08995 * 109.47276 * 60.00036 * 1 2 3 33 33 H 1.08997 * 109.46776 * 239.99972 * 2 1 3 34 34 H 1.08995 * 109.47276 * 119.99964 * 2 1 3 35 35 H 1.07992 * 119.99963 * 359.97438 * 4 3 2 36 36 H 1.08002 * 119.99844 * 179.97438 * 5 4 3 37 37 H 1.07997 * 120.00153 * 180.25017 * 6 5 4 38 38 H 1.08997 * 109.47193 * 149.72364 * 8 7 6 39 39 H 1.09004 * 109.47405 * 29.72261 * 8 7 6 40 40 H 0.97000 * 119.99341 * 359.97438 * 11 9 8 41 41 H 1.09005 * 109.47539 * 300.00558 * 14 12 11 42 42 H 1.09006 * 109.47137 * 60.00177 * 14 12 11 43 43 H 1.08997 * 109.47425 * 180.02562 * 15 14 12 44 44 H 1.08996 * 109.47216 * 300.00101 * 15 14 12 45 45 H 1.08995 * 109.47753 * 179.97438 * 16 15 14 46 46 H 1.09005 * 109.47067 * 59.99557 * 16 15 14 47 47 H 0.97001 * 119.99790 * 94.99446 * 19 17 16 48 48 H 0.96998 * 120.00381 * 180.02562 * 23 22 20 49 49 H 1.08991 * 109.47925 * 60.00288 * 28 17 16 50 50 H 1.09009 * 109.46506 * 180.02562 * 28 17 16 51 51 H 1.08002 * 119.99790 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0727 -1.1974 5 6 2.7225 3.3760 -1.1974 6 6 2.9483 4.0293 -0.0001 7 6 2.7230 3.3760 1.1969 8 6 2.9737 4.0866 2.5020 9 6 4.3969 3.8500 2.9375 10 8 5.1347 3.1707 2.2555 11 7 4.8494 4.3922 4.0854 12 6 6.2327 4.1617 4.5090 13 1 6.8788 4.1182 3.6323 14 6 6.3186 2.8383 5.2720 15 6 7.7632 2.5978 5.7150 16 6 8.2146 3.7416 6.6254 17 6 8.1287 5.0651 5.8624 18 1 8.4498 5.8800 6.5112 19 7 8.9974 5.0068 4.6843 20 6 10.3290 5.3049 4.8000 21 1 10.7377 5.5873 5.7590 22 6 11.1533 5.2441 3.6849 23 7 12.4330 5.5311 3.7960 24 14 10.4462 4.7562 2.0262 25 1 9.9824 5.9710 1.3090 26 1 11.4935 4.0763 1.2223 27 1 9.3006 3.8332 2.2286 28 6 6.6840 5.3055 5.4195 29 6 2.2627 2.0724 1.1969 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0823 1.5636 -2.1327 36 1 2.9025 3.8851 -2.1327 37 1 3.3040 5.0491 -0.0001 38 1 2.2927 3.7025 3.2615 39 1 2.8067 5.1558 2.3715 40 1 4.2591 4.9352 4.6310 41 1 5.6725 2.8818 6.1489 42 1 5.9966 2.0234 4.6236 43 1 7.8245 1.6549 6.2582 44 1 8.4095 2.5544 4.8384 45 1 9.2435 3.5701 6.9414 46 1 7.5681 3.7850 7.5020 47 1 8.6303 4.7531 3.8230 48 1 13.0090 5.4890 3.0167 49 1 6.0376 5.3488 6.2960 50 1 6.6230 6.2481 4.8756 51 1 2.0831 1.5631 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981177478.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:05 Heat of formation + Delta-G solvation = -25.787731 kcal Electronic energy + Delta-G solvation = -28356.441817 eV Core-core repulsion = 24640.584900 eV Total energy + Delta-G solvation = -3715.856917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.29510 -39.36231 -38.03644 -34.73932 -34.47508 -33.11635 -32.54256 -31.16308 -29.86896 -29.49497 -28.61386 -27.30546 -24.16635 -23.40947 -22.62826 -21.99469 -21.76034 -20.80168 -20.08572 -18.60557 -17.74416 -17.01485 -16.66845 -16.06601 -16.00383 -15.18918 -14.96811 -14.57055 -14.52863 -14.05355 -14.03398 -13.88041 -13.80868 -13.57235 -13.32389 -13.08062 -12.72282 -12.59958 -12.26820 -12.22625 -12.19306 -12.03549 -11.93816 -11.58853 -11.48827 -11.06181 -11.01789 -10.95814 -10.86658 -10.73435 -10.30873 -10.21741 -10.11533 -9.94690 -9.58131 -9.51123 -8.96078 -8.89638 -8.79076 -8.72325 -7.22678 -5.73527 -3.08455 1.20381 1.28897 2.69815 3.18320 3.43497 3.50082 3.53010 3.70450 4.41764 4.50371 4.64121 4.66779 4.82106 4.89073 4.95431 5.01894 5.04022 5.09231 5.12911 5.22542 5.24880 5.36045 5.37887 5.44209 5.45205 5.56575 5.60782 5.62129 5.63538 5.72693 5.79311 5.84401 5.93449 5.97563 5.99055 6.00152 6.07595 6.26702 6.33657 6.34479 6.42387 6.43458 6.48155 6.62088 6.70004 6.76052 6.88662 6.92068 6.99998 7.56641 8.02922 8.31137 8.45727 9.24504 9.97579 10.16832 11.44795 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014211 B = 0.002883 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.846900 B = 9708.725467 C =10647.876560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.083 4.083 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.110 4.110 7 C -0.060 4.060 8 C -0.103 4.103 9 C 0.509 3.491 10 O -0.526 6.526 11 N -0.727 5.727 12 C 0.144 3.856 13 H 0.089 0.911 14 C -0.121 4.121 15 C -0.111 4.111 16 C -0.136 4.136 17 C 0.184 3.816 18 H 0.060 0.940 19 N -0.746 5.746 20 C -0.241 4.241 21 H 0.091 0.909 22 C 0.006 3.994 23 N -0.935 5.935 24 Si 0.876 3.124 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.274 1.274 28 C -0.131 4.131 29 C -0.103 4.103 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.396 0.604 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.046 0.954 47 H 0.361 0.639 48 H 0.259 0.741 49 H 0.066 0.934 50 H 0.068 0.932 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.723 -5.913 -2.606 28.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.128 4.128 7 C -0.061 4.061 8 C -0.143 4.143 9 C 0.295 3.705 10 O -0.401 6.401 11 N -0.379 5.379 12 C 0.040 3.960 13 H 0.107 0.893 14 C -0.160 4.160 15 C -0.149 4.149 16 C -0.176 4.176 17 C 0.074 3.926 18 H 0.078 0.922 19 N -0.390 5.390 20 C -0.371 4.371 21 H 0.108 0.892 22 C -0.189 4.189 23 N -0.582 5.582 24 Si 0.707 3.293 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.200 1.200 28 C -0.170 4.170 29 C -0.121 4.121 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.230 0.770 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.195 0.805 48 H 0.069 0.931 49 H 0.085 0.915 50 H 0.087 0.913 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -26.943 -6.331 -3.034 27.842 hybrid contribution -0.528 -0.074 -0.997 1.131 sum -27.471 -6.404 -4.031 28.494 Atomic orbital electron populations 1.21742 0.94782 1.01608 1.02127 1.20539 0.96049 0.92760 1.02941 1.19819 0.99276 0.96075 0.93106 1.20987 1.00415 0.94993 0.97387 1.21073 0.99435 0.94982 0.97891 1.20977 0.99650 1.00102 0.92041 1.19239 0.98849 0.94376 0.93622 1.20695 0.94871 1.02483 0.96249 1.20512 0.89330 0.79831 0.80876 1.90770 1.57891 1.37923 1.53533 1.46183 1.14195 1.53587 1.23896 1.21045 0.81475 0.95128 0.98364 0.89258 1.21856 0.98003 0.96917 0.99188 1.21369 0.95006 0.97841 1.00684 1.22155 1.01099 0.97058 0.97265 1.20134 0.87537 0.95286 0.89601 0.92166 1.42883 1.06976 1.83467 1.05672 1.19062 0.82942 1.38339 0.96730 0.89157 1.24627 0.95345 1.01625 0.97335 1.69691 1.03656 1.55444 1.29451 0.86677 0.78353 0.78610 0.85703 1.21174 1.21712 1.20007 1.22119 0.98449 0.97583 0.98814 1.20803 0.99819 0.93902 0.97551 0.92467 0.92593 0.92614 0.91061 0.91030 0.86351 0.86107 0.86276 0.88121 0.88018 0.77022 0.92469 0.92341 0.92934 0.90954 0.91480 0.93493 0.80494 0.93119 0.91531 0.91299 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.09 -0.70 6.06 -27.88 -0.17 -0.87 16 3 C -0.08 -0.87 5.13 -104.62 -0.54 -1.41 16 4 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 5 C -0.12 -1.25 10.05 -39.59 -0.40 -1.65 16 6 C -0.11 -1.26 9.70 -39.58 -0.38 -1.65 16 7 C -0.06 -0.69 4.37 -104.62 -0.46 -1.15 16 8 C -0.10 -0.97 5.83 -29.04 -0.17 -1.14 16 9 C 0.51 6.91 7.79 -10.98 -0.09 6.82 16 10 O -0.53 -9.88 15.70 5.56 0.09 -9.79 16 11 N -0.73 -8.72 5.08 -53.81 -0.27 -8.99 16 12 C 0.14 2.20 2.28 -67.93 -0.16 2.04 16 13 H 0.09 1.76 5.94 -51.93 -0.31 1.45 16 14 C -0.12 -1.80 5.49 -26.73 -0.15 -1.94 16 15 C -0.11 -1.85 5.77 -26.74 -0.15 -2.01 16 16 C -0.14 -2.29 5.61 -26.73 -0.15 -2.44 16 17 C 0.18 3.39 3.10 -67.93 -0.21 3.18 16 18 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 19 N -0.75 -17.41 4.08 -53.42 -0.22 -17.63 16 20 C -0.24 -6.75 10.41 -15.06 -0.16 -6.90 16 21 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 23 N -0.93 -29.68 13.97 55.49 0.78 -28.90 16 24 Si 0.88 23.14 27.74 -169.99 -4.71 18.42 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 27 H -0.27 -7.08 6.52 56.52 0.37 -6.71 16 28 C -0.13 -1.90 5.07 -26.73 -0.14 -2.03 16 29 C -0.10 -1.14 9.36 -39.59 -0.37 -1.51 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 34 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.10 0.68 8.09 -51.93 -0.42 0.26 16 39 H 0.10 0.73 8.08 -51.93 -0.42 0.31 16 40 H 0.40 3.28 8.60 -40.82 -0.35 2.93 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 1.45 7.60 -51.93 -0.39 1.06 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.36 8.63 3.92 -40.82 -0.16 8.47 16 48 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 49 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.07 1.02 8.14 -51.92 -0.42 0.59 16 51 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 404.93 15.07 6.10 6.10 Total: -1.00 -34.91 404.93 -10.86 -45.76 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -8.82 Total: 9.83 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -3.79 Total: -14.80 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.28 Total: -55.53 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.71 Total: 18.42 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.91 -10.86 -45.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981177478.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.976 kcal (2) G-P(sol) polarization free energy of solvation -34.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds