Wall clock time and date at job start Tue Mar 31 2020 16:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47040 * 2 1 4 4 C 1.38266 * 119.99741 * 270.02298 * 3 2 1 5 5 C 1.38212 * 119.99495 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.00271 * 359.77052 * 5 4 3 7 7 C 1.38221 * 120.00018 * 0.46456 * 6 5 4 8 8 C 1.50695 * 120.00078 * 179.79027 * 7 6 5 9 9 C 1.50702 * 109.47135 * 269.72403 * 8 7 6 10 10 O 1.21283 * 119.99466 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00351 * 180.02562 * 9 8 7 12 12 C 1.46491 * 119.99958 * 179.97438 * 11 9 8 13 13 H 1.08991 * 109.47703 * 34.99644 * 12 11 9 14 14 C 1.53001 * 109.47219 * 274.99376 * 12 11 9 15 15 C 1.52996 * 109.47349 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47220 * 60.00418 * 15 14 12 17 17 C 1.53008 * 109.47074 * 300.00109 * 16 15 14 18 18 H 1.08999 * 109.47058 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47014 * 299.99808 * 17 16 15 20 20 C 1.36939 * 119.99933 * 275.27473 * 19 17 16 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 17 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 17 23 23 N 1.31612 * 120.00054 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99751 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47517 * 89.99708 * 24 22 20 26 26 H 1.48502 * 109.46736 * 209.99481 * 24 22 20 27 27 H 1.48496 * 109.47375 * 329.99177 * 24 22 20 28 28 C 1.52999 * 109.46675 * 59.99923 * 17 16 15 29 29 C 1.38204 * 120.00120 * 90.00170 * 3 2 1 30 30 H 1.09000 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47175 * 299.99867 * 1 2 3 32 32 H 1.08995 * 109.47276 * 60.00036 * 1 2 3 33 33 H 1.08997 * 109.46776 * 239.99972 * 2 1 3 34 34 H 1.08995 * 109.47276 * 119.99964 * 2 1 3 35 35 H 1.07992 * 119.99963 * 359.97438 * 4 3 2 36 36 H 1.08002 * 119.99844 * 179.97438 * 5 4 3 37 37 H 1.07997 * 120.00153 * 180.25017 * 6 5 4 38 38 H 1.08997 * 109.47193 * 149.72364 * 8 7 6 39 39 H 1.09004 * 109.47405 * 29.72261 * 8 7 6 40 40 H 0.97000 * 119.99341 * 359.97438 * 11 9 8 41 41 H 1.09005 * 109.47539 * 300.00558 * 14 12 11 42 42 H 1.09006 * 109.47137 * 60.00177 * 14 12 11 43 43 H 1.08997 * 109.47425 * 180.02562 * 15 14 12 44 44 H 1.08996 * 109.47216 * 300.00101 * 15 14 12 45 45 H 1.08995 * 109.47753 * 179.97438 * 16 15 14 46 46 H 1.09005 * 109.47067 * 59.99557 * 16 15 14 47 47 H 0.97001 * 119.99790 * 94.99446 * 19 17 16 48 48 H 0.96998 * 120.00381 * 180.02562 * 23 22 20 49 49 H 1.08991 * 109.47925 * 60.00288 * 28 17 16 50 50 H 1.09009 * 109.46506 * 180.02562 * 28 17 16 51 51 H 1.08002 * 119.99790 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0727 -1.1974 5 6 2.7225 3.3760 -1.1974 6 6 2.9483 4.0293 -0.0001 7 6 2.7230 3.3760 1.1969 8 6 2.9737 4.0866 2.5020 9 6 4.3969 3.8500 2.9375 10 8 5.1347 3.1707 2.2555 11 7 4.8494 4.3922 4.0854 12 6 6.2327 4.1617 4.5090 13 1 6.8788 4.1182 3.6323 14 6 6.3186 2.8383 5.2720 15 6 7.7632 2.5978 5.7150 16 6 8.2146 3.7416 6.6254 17 6 8.1287 5.0651 5.8624 18 1 8.4498 5.8800 6.5112 19 7 8.9974 5.0068 4.6843 20 6 10.3290 5.3049 4.8000 21 1 10.7377 5.5873 5.7590 22 6 11.1533 5.2441 3.6849 23 7 12.4330 5.5311 3.7960 24 14 10.4462 4.7562 2.0262 25 1 9.9824 5.9710 1.3090 26 1 11.4935 4.0763 1.2223 27 1 9.3006 3.8332 2.2286 28 6 6.6840 5.3055 5.4195 29 6 2.2627 2.0724 1.1969 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0823 1.5636 -2.1327 36 1 2.9025 3.8851 -2.1327 37 1 3.3040 5.0491 -0.0001 38 1 2.2927 3.7025 3.2615 39 1 2.8067 5.1558 2.3715 40 1 4.2591 4.9352 4.6310 41 1 5.6725 2.8818 6.1489 42 1 5.9966 2.0234 4.6236 43 1 7.8245 1.6549 6.2582 44 1 8.4095 2.5544 4.8384 45 1 9.2435 3.5701 6.9414 46 1 7.5681 3.7850 7.5020 47 1 8.6303 4.7531 3.8230 48 1 13.0090 5.4890 3.0167 49 1 6.0376 5.3488 6.2960 50 1 6.6230 6.2481 4.8756 51 1 2.0831 1.5631 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981177478.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:04 Heat of formation + Delta-G solvation = -46.958141 kcal Electronic energy + Delta-G solvation = -28357.359835 eV Core-core repulsion = 24640.584900 eV Total energy + Delta-G solvation = -3716.774935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.31213 -40.31463 -39.29325 -36.10339 -35.32615 -34.73192 -33.40287 -33.01164 -30.96247 -30.43093 -30.05470 -28.19250 -25.39183 -24.81450 -23.67885 -23.35411 -22.76111 -21.79640 -21.00004 -20.02663 -19.77490 -18.05602 -17.56319 -17.19315 -16.80006 -16.53030 -16.10105 -15.95822 -15.77088 -15.62943 -15.14355 -14.97594 -14.74262 -14.54075 -14.49302 -14.13991 -14.04883 -13.81782 -13.78600 -13.44989 -13.05619 -12.99641 -12.95368 -12.82005 -12.61384 -12.51477 -12.23078 -12.16199 -12.15972 -11.87185 -11.71827 -11.65170 -11.60482 -11.52987 -11.27236 -10.91168 -10.79229 -10.00587 -9.69581 -9.51108 -9.28216 -8.04812 -5.33731 0.40627 0.49374 1.29017 1.33301 1.37919 1.69024 2.21439 2.42235 2.88834 3.27747 3.60490 3.65989 3.78645 3.81334 3.91548 3.97608 4.06031 4.15738 4.21577 4.28273 4.32254 4.37509 4.40942 4.49042 4.54963 4.57228 4.60746 4.66018 4.67976 4.74757 4.77785 4.78537 4.96840 5.00932 5.07717 5.09304 5.15445 5.18470 5.21960 5.27181 5.37117 5.40780 5.46634 5.55616 5.57574 5.62482 5.64808 5.71207 5.80511 6.12878 6.21576 6.64903 7.08002 7.36269 7.87419 8.02613 9.17377 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014211 B = 0.002883 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.846900 B = 9708.725467 C =10647.876560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.132 4.132 5 C -0.129 4.129 6 C -0.131 4.131 7 C -0.075 4.075 8 C -0.093 4.093 9 C 0.506 3.494 10 O -0.585 6.585 11 N -0.710 5.710 12 C 0.147 3.853 13 H 0.039 0.961 14 C -0.110 4.110 15 C -0.110 4.110 16 C -0.128 4.128 17 C 0.170 3.830 18 H 0.058 0.942 19 N -0.751 5.751 20 C -0.213 4.213 21 H 0.067 0.933 22 C -0.058 4.058 23 N -0.982 5.982 24 Si 0.936 3.064 25 H -0.280 1.280 26 H -0.296 1.296 27 H -0.272 1.272 28 C -0.117 4.117 29 C -0.119 4.119 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.420 0.580 41 H 0.095 0.905 42 H 0.042 0.958 43 H 0.069 0.931 44 H 0.027 0.973 45 H 0.037 0.963 46 H 0.090 0.910 47 H 0.359 0.641 48 H 0.256 0.744 49 H 0.114 0.886 50 H 0.068 0.932 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.599 -6.005 -1.443 32.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.149 4.149 5 C -0.146 4.146 6 C -0.149 4.149 7 C -0.076 4.076 8 C -0.132 4.132 9 C 0.294 3.706 10 O -0.465 6.465 11 N -0.362 5.362 12 C 0.042 3.958 13 H 0.058 0.942 14 C -0.149 4.149 15 C -0.148 4.148 16 C -0.167 4.167 17 C 0.062 3.938 18 H 0.076 0.924 19 N -0.395 5.395 20 C -0.344 4.344 21 H 0.085 0.915 22 C -0.250 4.250 23 N -0.633 5.633 24 Si 0.766 3.234 25 H -0.207 1.207 26 H -0.223 1.223 27 H -0.198 1.198 28 C -0.155 4.155 29 C -0.137 4.137 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.143 0.857 38 H 0.152 0.848 39 H 0.147 0.853 40 H 0.257 0.743 41 H 0.113 0.887 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.046 0.954 45 H 0.055 0.945 46 H 0.108 0.892 47 H 0.193 0.807 48 H 0.065 0.935 49 H 0.133 0.867 50 H 0.086 0.914 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -30.909 -6.398 -1.815 31.617 hybrid contribution 0.645 -0.062 -1.261 1.418 sum -30.264 -6.460 -3.077 31.099 Atomic orbital electron populations 1.21706 0.93532 1.02442 1.02100 1.20582 0.97088 0.91458 1.03146 1.20163 0.98863 0.97124 0.93103 1.21271 1.00343 0.95096 0.98237 1.21367 0.99347 0.95435 0.98492 1.21232 1.00340 1.00734 0.92635 1.19534 0.98767 0.94770 0.94498 1.20737 0.92256 1.04129 0.96060 1.21254 0.90517 0.78541 0.80317 1.90755 1.59769 1.40659 1.55306 1.45931 1.13077 1.53366 1.23857 1.20761 0.82529 0.95860 0.96636 0.94244 1.21760 0.96947 0.96025 1.00140 1.21333 0.95661 0.98778 0.99042 1.22041 1.00402 0.95840 0.98441 1.20505 0.89219 0.96065 0.87999 0.92399 1.42993 1.05812 1.83158 1.07488 1.19098 0.84917 1.35114 0.95292 0.91542 1.25239 0.95722 1.03453 1.00558 1.69829 1.05018 1.58372 1.30130 0.85699 0.77352 0.78267 0.82074 1.20678 1.22277 1.19787 1.21996 0.96144 0.96967 1.00436 1.21067 1.00169 0.94152 0.98274 0.91191 0.92641 0.92612 0.90612 0.91071 0.84730 0.84718 0.85733 0.84776 0.85341 0.74263 0.88691 0.93866 0.91268 0.95450 0.94451 0.89163 0.80741 0.93520 0.86725 0.91369 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.89 71.98 0.71 -0.93 16 2 C -0.09 -1.30 6.06 29.85 0.18 -1.12 16 3 C -0.09 -1.86 5.13 -19.87 -0.10 -1.96 16 4 C -0.13 -2.64 9.70 22.27 0.22 -2.42 16 5 C -0.13 -2.70 10.05 22.27 0.22 -2.48 16 6 C -0.13 -2.93 9.70 22.27 0.22 -2.72 16 7 C -0.08 -1.61 4.37 -19.87 -0.09 -1.70 16 8 C -0.09 -1.46 5.83 29.10 0.17 -1.29 16 9 C 0.51 12.70 7.79 87.66 0.68 13.38 16 10 O -0.59 -21.94 15.70 -3.04 -0.05 -21.99 16 11 N -0.71 -14.67 5.08 -442.55 -2.25 -16.91 16 12 C 0.15 4.18 2.28 44.99 0.10 4.28 16 13 H 0.04 1.55 5.94 -2.39 -0.01 1.54 16 14 C -0.11 -2.98 5.49 30.59 0.17 -2.81 16 15 C -0.11 -3.53 5.77 30.59 0.18 -3.36 16 16 C -0.13 -4.04 5.61 30.60 0.17 -3.87 16 17 C 0.17 5.96 3.10 44.99 0.14 6.10 16 18 H 0.06 2.07 8.08 -2.39 -0.02 2.06 16 19 N -0.75 -35.25 4.08 -322.93 -1.32 -36.56 16 20 C -0.21 -12.21 10.41 84.03 0.87 -11.33 16 21 H 0.07 4.08 8.06 -2.91 -0.02 4.06 16 22 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 23 N -0.98 -64.46 13.97 21.65 0.30 -64.16 16 24 Si 0.94 49.61 27.74 68.60 1.90 51.51 16 25 H -0.28 -14.49 7.11 99.48 0.71 -13.78 16 26 H -0.30 -15.80 7.11 99.48 0.71 -15.10 16 27 H -0.27 -14.13 6.52 99.48 0.65 -13.49 16 28 C -0.12 -2.99 5.07 30.60 0.16 -2.83 16 29 C -0.12 -2.50 9.36 22.27 0.21 -2.29 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 34 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 35 H 0.13 2.11 8.06 -2.91 -0.02 2.08 16 36 H 0.13 2.28 8.06 -2.91 -0.02 2.25 16 37 H 0.12 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.13 1.22 8.09 -2.39 -0.02 1.20 16 39 H 0.13 1.34 8.08 -2.38 -0.02 1.33 16 40 H 0.42 4.81 8.60 -92.71 -0.80 4.02 16 41 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.03 1.11 7.60 -2.39 -0.02 1.09 16 45 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 47 H 0.36 17.34 3.92 -92.71 -0.36 16.98 16 48 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 49 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 50 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 51 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -80.96 404.93 2.96 -78.00 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: -0.31 Total: 30.55 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: 4.68 Total: -20.44 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -3.26 Total: -117.64 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.05 Total: -21.99 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 1.90 Total: 51.51 kcal Total: -80.96 2.96 -78.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981177478.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.043 kcal (2) G-P(sol) polarization free energy of solvation -80.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds