Wall clock time and date at job start Tue Mar 31 2020 16:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50708 * 109.46775 * 2 1 4 4 C 1.38254 * 119.99823 * 270.02321 * 3 2 1 5 5 C 1.38216 * 119.99725 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.00088 * 359.97438 * 5 4 3 7 7 C 1.38209 * 119.99907 * 359.74637 * 6 5 4 8 8 C 1.50698 * 120.00297 * 180.27545 * 7 6 5 9 9 C 1.50709 * 109.47066 * 270.25856 * 8 7 6 10 10 O 1.21280 * 120.00024 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99760 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99834 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47180 * 325.00653 * 12 11 9 14 14 C 1.53002 * 109.46817 * 85.00378 * 12 11 9 15 15 C 1.52994 * 109.47392 * 59.99625 * 14 12 11 16 16 C 1.53008 * 109.46684 * 60.00136 * 15 14 12 17 17 C 1.53000 * 109.47337 * 299.99550 * 16 15 14 18 18 H 1.08995 * 109.47290 * 300.01097 * 17 16 15 19 19 N 1.46492 * 109.47213 * 180.02562 * 17 16 15 20 20 C 1.36940 * 120.00009 * 85.00393 * 19 17 16 21 21 H 1.08002 * 119.99679 * 0.02562 * 20 19 17 22 22 C 1.38810 * 119.99726 * 179.97438 * 20 19 17 23 23 N 1.31615 * 120.00636 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99465 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47307 * 60.00324 * 24 22 20 26 26 H 1.48508 * 109.46894 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47159 * 300.00001 * 24 22 20 28 28 C 1.53000 * 109.47336 * 205.00038 * 12 11 9 29 29 C 1.38212 * 119.99857 * 90.00725 * 3 2 1 30 30 H 1.09001 * 109.46647 * 299.99691 * 1 2 3 31 31 H 1.08991 * 109.47157 * 59.99485 * 1 2 3 32 32 H 1.08998 * 109.46599 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46647 * 240.00308 * 2 1 3 34 34 H 1.08992 * 109.47295 * 119.99979 * 2 1 3 35 35 H 1.07997 * 120.00486 * 359.97438 * 4 3 2 36 36 H 1.08002 * 119.99716 * 179.97438 * 5 4 3 37 37 H 1.08000 * 120.00073 * 179.97438 * 6 5 4 38 38 H 1.09000 * 109.47001 * 30.25451 * 8 7 6 39 39 H 1.08998 * 109.47342 * 150.25465 * 8 7 6 40 40 H 0.97000 * 119.99847 * 359.97438 * 11 9 8 41 41 H 1.09000 * 109.47267 * 180.02562 * 14 12 11 42 42 H 1.08998 * 109.46889 * 300.00069 * 14 12 11 43 43 H 1.08996 * 109.47422 * 179.97438 * 15 14 12 44 44 H 1.09000 * 109.47321 * 300.00464 * 15 14 12 45 45 H 1.09000 * 109.46974 * 60.00116 * 16 15 14 46 46 H 1.09002 * 109.46840 * 179.97438 * 16 15 14 47 47 H 0.97008 * 120.00146 * 265.00207 * 19 17 16 48 48 H 0.96999 * 120.00510 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.46759 * 59.99876 * 28 12 11 50 50 H 1.08990 * 109.47171 * 180.02562 * 28 12 11 51 51 H 1.08002 * 119.99812 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2623 2.0728 -1.1973 5 6 2.7234 3.3758 -1.1973 6 6 2.9543 4.0274 0.0000 7 6 2.7189 3.3776 1.1969 8 6 2.9646 4.0898 2.5020 9 6 4.3880 3.8589 2.9402 10 8 5.1296 3.1821 2.2599 11 7 4.8366 4.4044 4.0881 12 6 6.2201 4.1795 4.5143 13 1 6.5294 3.1741 4.2284 14 6 7.1342 5.2052 3.8411 15 6 6.7000 6.6163 4.2422 16 6 6.7965 6.7669 5.7618 17 6 5.8822 5.7413 6.4351 18 1 4.8529 5.9085 6.1179 19 7 5.9741 5.8859 7.8899 20 6 5.1962 6.8087 8.5368 21 1 4.5146 7.4296 7.9743 22 6 5.2829 6.9453 9.9154 23 7 6.1132 6.1883 10.6009 24 14 4.2212 8.2037 10.7978 25 1 2.7880 7.8982 10.5571 26 1 4.5007 8.1522 12.2554 27 1 4.5313 9.5615 10.2825 28 6 6.3165 4.3301 6.0338 29 6 2.2628 2.0724 1.1970 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0824 1.5637 -2.1326 36 1 2.9034 3.8849 -2.1327 37 1 3.3150 5.0453 0.0000 38 1 2.7938 5.1583 2.3706 39 1 2.2837 3.7037 3.2605 40 1 4.2435 4.9460 4.6319 41 1 8.1637 5.0376 4.1578 42 1 7.0655 5.0979 2.7586 43 1 7.3515 7.3470 3.7630 44 1 5.6706 6.7836 3.9252 45 1 7.8258 6.5995 6.0789 46 1 6.4875 7.7724 6.0476 47 1 6.5861 5.3279 8.3951 48 1 6.1741 6.2840 11.5642 49 1 5.6652 3.5994 6.5133 50 1 7.3459 4.1632 6.3508 51 1 2.0825 1.5633 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981177480.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:08 Heat of formation + Delta-G solvation = -31.563321 kcal Electronic energy + Delta-G solvation = -27964.208136 eV Core-core repulsion = 24248.100770 eV Total energy + Delta-G solvation = -3716.107365 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.33352 -39.40432 -37.84995 -34.67889 -34.40810 -33.08926 -32.49124 -31.16756 -29.93296 -29.55583 -27.97117 -27.36414 -24.15521 -23.76517 -22.57677 -22.02960 -21.40370 -20.93351 -20.10978 -18.80123 -17.36923 -16.97311 -16.64519 -16.00722 -15.63263 -15.38961 -15.00196 -14.85833 -14.42881 -14.06851 -13.96981 -13.83788 -13.63826 -13.46497 -13.30762 -13.05459 -13.04677 -12.54504 -12.26254 -12.17563 -11.98774 -11.92402 -11.83819 -11.72446 -11.46236 -11.03941 -11.02024 -10.94873 -10.89483 -10.78074 -10.38787 -10.24122 -10.18322 -9.80334 -9.75830 -9.53615 -8.94250 -8.89443 -8.82489 -8.72031 -6.99835 -5.80107 -3.09213 1.21207 1.29081 2.72922 3.25933 3.40568 3.45289 3.46369 3.72807 4.45918 4.51966 4.54270 4.68097 4.87347 4.92001 4.96894 5.06211 5.08801 5.11639 5.14504 5.18458 5.25449 5.32205 5.39012 5.45620 5.48167 5.57922 5.63816 5.64312 5.68694 5.76444 5.86134 5.87464 5.94890 5.97596 5.98451 6.06018 6.10777 6.26283 6.28664 6.33584 6.44159 6.49049 6.49459 6.56266 6.69796 6.70778 6.88986 6.92521 7.07051 7.64067 7.65233 8.33764 8.38285 9.49351 10.07073 10.41376 11.42364 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016419 B = 0.002301 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.980672 B =12164.108901 C =12901.548399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.083 4.083 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.057 4.057 8 C -0.107 4.107 9 C 0.514 3.486 10 O -0.538 6.538 11 N -0.719 5.719 12 C 0.152 3.848 13 H 0.082 0.918 14 C -0.127 4.127 15 C -0.114 4.114 16 C -0.137 4.137 17 C 0.181 3.819 18 H 0.041 0.959 19 N -0.725 5.725 20 C -0.240 4.240 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.133 4.133 29 C -0.102 4.102 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.403 0.597 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.384 0.616 48 H 0.256 0.744 49 H 0.069 0.931 50 H 0.075 0.925 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.887 -7.933 -22.645 25.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.058 4.058 8 C -0.147 4.147 9 C 0.300 3.700 10 O -0.415 6.415 11 N -0.372 5.372 12 C 0.047 3.953 13 H 0.100 0.900 14 C -0.165 4.165 15 C -0.153 4.153 16 C -0.177 4.177 17 C 0.071 3.929 18 H 0.059 0.941 19 N -0.365 5.365 20 C -0.371 4.371 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.172 4.172 29 C -0.120 4.120 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.239 0.761 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.217 0.783 48 H 0.066 0.934 49 H 0.087 0.913 50 H 0.094 0.906 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.471 -8.303 -23.025 25.591 hybrid contribution -0.505 0.964 1.050 1.513 sum -7.976 -7.339 -21.975 24.502 Atomic orbital electron populations 1.21747 0.94758 1.01633 1.02198 1.20541 0.96101 0.92762 1.02865 1.19822 0.99232 0.96109 0.93100 1.20969 1.00587 0.95017 0.97337 1.21054 0.99681 0.94979 0.97814 1.20954 0.99779 1.00032 0.92000 1.19260 0.98586 0.94287 0.93644 1.20721 0.95120 1.02601 0.96240 1.20449 0.89213 0.79388 0.80968 1.90704 1.58061 1.38999 1.53761 1.46229 1.13929 1.53202 1.23807 1.20926 0.80809 0.99148 0.94384 0.89965 1.21887 0.99209 0.95421 1.00030 1.21496 1.00662 0.95751 0.97351 1.22290 1.01182 1.01396 0.92870 1.20139 0.96017 0.90939 0.85803 0.94067 1.42421 1.49047 1.44834 1.00213 1.19165 1.15759 1.12253 0.89905 0.91302 1.24742 0.99853 0.99849 0.96468 1.69643 1.39792 1.41948 1.06663 0.86295 0.79995 0.81207 0.78826 1.21284 1.21710 1.21300 1.22125 1.02856 0.99414 0.92806 1.20843 0.99660 0.93920 0.97606 0.92497 0.92633 0.92466 0.91139 0.91011 0.86434 0.86216 0.86336 0.87927 0.87909 0.76110 0.91265 0.92171 0.92931 0.92648 0.92594 0.92108 0.78254 0.93440 0.91276 0.90614 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.90 37.16 0.37 -0.62 16 2 C -0.09 -0.67 6.06 -27.88 -0.17 -0.84 16 3 C -0.08 -0.83 5.13 -104.62 -0.54 -1.36 16 4 C -0.12 -1.16 9.70 -39.58 -0.38 -1.55 16 5 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 6 C -0.11 -1.17 9.70 -39.59 -0.38 -1.56 16 7 C -0.06 -0.64 4.37 -104.63 -0.46 -1.10 16 8 C -0.11 -1.06 5.83 -29.03 -0.17 -1.22 16 9 C 0.51 6.69 7.79 -10.98 -0.09 6.60 16 10 O -0.54 -8.98 15.70 5.56 0.09 -8.89 16 11 N -0.72 -9.02 4.23 -53.80 -0.23 -9.24 16 12 C 0.15 2.10 2.78 -67.93 -0.19 1.91 16 13 H 0.08 1.20 7.58 -51.93 -0.39 0.81 16 14 C -0.13 -1.70 5.60 -26.73 -0.15 -1.85 16 15 C -0.11 -1.58 5.77 -26.73 -0.15 -1.73 16 16 C -0.14 -2.32 5.50 -26.73 -0.15 -2.47 16 17 C 0.18 3.30 2.60 -67.93 -0.18 3.12 16 18 H 0.04 0.74 6.44 -51.93 -0.33 0.40 16 19 N -0.72 -17.28 5.12 -53.43 -0.27 -17.55 16 20 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 21 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -27.61 13.06 55.49 0.72 -26.88 16 24 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 28 C -0.13 -2.07 5.08 -26.73 -0.14 -2.21 16 29 C -0.10 -1.12 9.36 -39.58 -0.37 -1.49 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.10 0.82 8.09 -51.93 -0.42 0.40 16 39 H 0.10 0.84 8.09 -51.93 -0.42 0.42 16 40 H 0.40 4.68 6.87 -40.82 -0.28 4.40 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.73 7.60 -51.93 -0.39 0.34 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 47 H 0.38 9.85 7.80 -40.82 -0.32 9.53 16 48 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 49 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 50 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 51 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 408.05 15.07 6.15 6.15 Total: -1.00 -31.76 408.05 -11.21 -42.98 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -8.87 Total: 11.48 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -3.78 Total: -14.91 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.22 Total: -53.68 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.76 -11.21 -42.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981177480.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.414 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds