Wall clock time and date at job start Tue Mar 31 2020 16:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50708 * 109.46775 * 2 1 4 4 C 1.38254 * 119.99823 * 270.02321 * 3 2 1 5 5 C 1.38216 * 119.99725 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.00088 * 359.97438 * 5 4 3 7 7 C 1.38209 * 119.99907 * 359.74637 * 6 5 4 8 8 C 1.50698 * 120.00297 * 180.27545 * 7 6 5 9 9 C 1.50709 * 109.47066 * 270.25856 * 8 7 6 10 10 O 1.21280 * 120.00024 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99760 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99834 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47180 * 325.00653 * 12 11 9 14 14 C 1.53002 * 109.46817 * 85.00378 * 12 11 9 15 15 C 1.52994 * 109.47392 * 59.99625 * 14 12 11 16 16 C 1.53008 * 109.46684 * 60.00136 * 15 14 12 17 17 C 1.53000 * 109.47337 * 299.99550 * 16 15 14 18 18 H 1.08995 * 109.47290 * 300.01097 * 17 16 15 19 19 N 1.46492 * 109.47213 * 180.02562 * 17 16 15 20 20 C 1.36940 * 120.00009 * 85.00393 * 19 17 16 21 21 H 1.08002 * 119.99679 * 0.02562 * 20 19 17 22 22 C 1.38810 * 119.99726 * 179.97438 * 20 19 17 23 23 N 1.31615 * 120.00636 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99465 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47307 * 60.00324 * 24 22 20 26 26 H 1.48508 * 109.46894 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47159 * 300.00001 * 24 22 20 28 28 C 1.53000 * 109.47336 * 205.00038 * 12 11 9 29 29 C 1.38212 * 119.99857 * 90.00725 * 3 2 1 30 30 H 1.09001 * 109.46647 * 299.99691 * 1 2 3 31 31 H 1.08991 * 109.47157 * 59.99485 * 1 2 3 32 32 H 1.08998 * 109.46599 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46647 * 240.00308 * 2 1 3 34 34 H 1.08992 * 109.47295 * 119.99979 * 2 1 3 35 35 H 1.07997 * 120.00486 * 359.97438 * 4 3 2 36 36 H 1.08002 * 119.99716 * 179.97438 * 5 4 3 37 37 H 1.08000 * 120.00073 * 179.97438 * 6 5 4 38 38 H 1.09000 * 109.47001 * 30.25451 * 8 7 6 39 39 H 1.08998 * 109.47342 * 150.25465 * 8 7 6 40 40 H 0.97000 * 119.99847 * 359.97438 * 11 9 8 41 41 H 1.09000 * 109.47267 * 180.02562 * 14 12 11 42 42 H 1.08998 * 109.46889 * 300.00069 * 14 12 11 43 43 H 1.08996 * 109.47422 * 179.97438 * 15 14 12 44 44 H 1.09000 * 109.47321 * 300.00464 * 15 14 12 45 45 H 1.09000 * 109.46974 * 60.00116 * 16 15 14 46 46 H 1.09002 * 109.46840 * 179.97438 * 16 15 14 47 47 H 0.97008 * 120.00146 * 265.00207 * 19 17 16 48 48 H 0.96999 * 120.00510 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.46759 * 59.99876 * 28 12 11 50 50 H 1.08990 * 109.47171 * 180.02562 * 28 12 11 51 51 H 1.08002 * 119.99812 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2623 2.0728 -1.1973 5 6 2.7234 3.3758 -1.1973 6 6 2.9543 4.0274 0.0000 7 6 2.7189 3.3776 1.1969 8 6 2.9646 4.0898 2.5020 9 6 4.3880 3.8589 2.9402 10 8 5.1296 3.1821 2.2599 11 7 4.8366 4.4044 4.0881 12 6 6.2201 4.1795 4.5143 13 1 6.5294 3.1741 4.2284 14 6 7.1342 5.2052 3.8411 15 6 6.7000 6.6163 4.2422 16 6 6.7965 6.7669 5.7618 17 6 5.8822 5.7413 6.4351 18 1 4.8529 5.9085 6.1179 19 7 5.9741 5.8859 7.8899 20 6 5.1962 6.8087 8.5368 21 1 4.5146 7.4296 7.9743 22 6 5.2829 6.9453 9.9154 23 7 6.1132 6.1883 10.6009 24 14 4.2212 8.2037 10.7978 25 1 2.7880 7.8982 10.5571 26 1 4.5007 8.1522 12.2554 27 1 4.5313 9.5615 10.2825 28 6 6.3165 4.3301 6.0338 29 6 2.2628 2.0724 1.1970 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0824 1.5637 -2.1326 36 1 2.9034 3.8849 -2.1327 37 1 3.3150 5.0453 0.0000 38 1 2.7938 5.1583 2.3706 39 1 2.2837 3.7037 3.2605 40 1 4.2435 4.9460 4.6319 41 1 8.1637 5.0376 4.1578 42 1 7.0655 5.0979 2.7586 43 1 7.3515 7.3470 3.7630 44 1 5.6706 6.7836 3.9252 45 1 7.8258 6.5995 6.0789 46 1 6.4875 7.7724 6.0476 47 1 6.5861 5.3279 8.3951 48 1 6.1741 6.2840 11.5642 49 1 5.6652 3.5994 6.5133 50 1 7.3459 4.1632 6.3508 51 1 2.0825 1.5633 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981177480.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:07 Heat of formation + Delta-G solvation = -48.179491 kcal Electronic energy + Delta-G solvation = -27964.928667 eV Core-core repulsion = 24248.100770 eV Total energy + Delta-G solvation = -3716.827896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.35613 -40.29007 -39.05776 -36.13066 -35.29139 -34.40853 -33.34145 -32.86577 -31.04055 -30.32864 -29.54704 -28.24739 -25.67124 -24.78497 -23.59811 -23.09119 -22.53850 -22.11183 -20.93850 -20.07837 -19.14157 -18.14321 -17.41146 -16.93382 -16.75256 -16.63954 -16.21548 -15.82273 -15.78487 -15.34494 -15.05649 -14.85739 -14.74476 -14.62121 -14.44586 -14.03883 -13.90070 -13.75943 -13.53083 -13.08398 -13.04507 -12.93985 -12.87273 -12.79845 -12.74605 -12.57710 -12.24774 -12.12294 -12.06705 -11.93864 -11.68375 -11.61444 -11.57672 -11.44584 -10.99094 -10.88498 -10.81156 -9.97015 -9.65604 -9.46854 -8.97185 -7.91048 -5.18997 0.45355 0.53798 1.49144 1.51275 1.57134 1.72086 2.28832 2.58251 2.93464 3.42273 3.66689 3.70904 3.84663 3.89180 3.94256 4.01380 4.08583 4.25475 4.30223 4.31397 4.34470 4.37376 4.40366 4.51786 4.57134 4.59957 4.64107 4.68483 4.71586 4.73601 4.80178 4.82849 4.97595 5.04056 5.09553 5.11851 5.19367 5.22137 5.24175 5.24976 5.38460 5.39040 5.52368 5.53507 5.58098 5.60222 5.68803 5.69801 5.75705 6.16933 6.30995 6.62938 7.32359 7.37139 8.14217 8.36097 9.32319 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016419 B = 0.002301 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.980672 B =12164.108901 C =12901.548399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.092 4.092 4 C -0.130 4.130 5 C -0.125 4.125 6 C -0.126 4.126 7 C -0.073 4.073 8 C -0.101 4.101 9 C 0.516 3.484 10 O -0.577 6.577 11 N -0.714 5.714 12 C 0.160 3.840 13 H 0.076 0.924 14 C -0.121 4.121 15 C -0.103 4.103 16 C -0.128 4.128 17 C 0.178 3.822 18 H 0.050 0.950 19 N -0.738 5.738 20 C -0.233 4.233 21 H 0.078 0.922 22 C -0.078 4.078 23 N -0.971 5.971 24 Si 0.968 3.032 25 H -0.276 1.276 26 H -0.300 1.300 27 H -0.280 1.280 28 C -0.121 4.121 29 C -0.122 4.122 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.409 0.591 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.045 0.955 46 H 0.042 0.958 47 H 0.371 0.629 48 H 0.249 0.751 49 H 0.061 0.939 50 H 0.073 0.927 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.128 -7.464 -24.526 27.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.147 4.147 5 C -0.142 4.142 6 C -0.144 4.144 7 C -0.073 4.073 8 C -0.141 4.141 9 C 0.304 3.696 10 O -0.456 6.456 11 N -0.367 5.367 12 C 0.055 3.945 13 H 0.094 0.906 14 C -0.159 4.159 15 C -0.141 4.141 16 C -0.168 4.168 17 C 0.069 3.931 18 H 0.068 0.932 19 N -0.377 5.377 20 C -0.365 4.365 21 H 0.096 0.904 22 C -0.270 4.270 23 N -0.622 5.622 24 Si 0.798 3.202 25 H -0.202 1.202 26 H -0.227 1.227 27 H -0.206 1.206 28 C -0.159 4.159 29 C -0.140 4.140 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.246 0.754 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.203 0.797 48 H 0.058 0.942 49 H 0.080 0.920 50 H 0.092 0.908 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.742 -7.813 -24.954 27.571 hybrid contribution -0.105 0.775 1.534 1.722 sum -8.848 -7.039 -23.419 26.006 Atomic orbital electron populations 1.21717 0.93881 1.02376 1.01984 1.20580 0.96817 0.91643 1.03200 1.20125 0.98902 0.97075 0.93076 1.21273 1.00230 0.95191 0.98047 1.21374 0.99149 0.95245 0.98472 1.21202 1.00182 1.00721 0.92304 1.19465 0.98970 0.94596 0.94307 1.20754 0.93031 1.04051 0.96219 1.20943 0.90114 0.78279 0.80282 1.90689 1.59360 1.40684 1.54876 1.46172 1.13458 1.53135 1.23897 1.20746 0.81821 0.99115 0.92824 0.90568 1.21830 0.99359 0.94847 0.99884 1.21397 1.01724 0.96339 0.94651 1.22118 0.99953 0.99618 0.95149 1.20371 0.96905 0.92826 0.82949 0.93222 1.42652 1.48432 1.44157 1.02477 1.19570 1.14995 1.11741 0.90166 0.90409 1.25520 1.01751 1.02246 0.97532 1.69804 1.42004 1.44092 1.06306 0.85285 0.78784 0.79166 0.76979 1.20243 1.22681 1.20601 1.21957 1.02464 0.97403 0.94103 1.21043 1.00438 0.94288 0.98194 0.93083 0.92453 0.91244 0.90202 0.91271 0.84535 0.84278 0.85414 0.85656 0.86159 0.75377 0.90784 0.92093 0.91537 0.91631 0.93636 0.93935 0.79738 0.94238 0.91995 0.90828 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.90 71.98 0.71 -1.02 16 2 C -0.09 -1.24 6.06 29.85 0.18 -1.06 16 3 C -0.09 -1.75 5.13 -19.86 -0.10 -1.85 16 4 C -0.13 -2.30 9.70 22.27 0.22 -2.09 16 5 C -0.12 -2.26 10.05 22.27 0.22 -2.04 16 6 C -0.13 -2.53 9.70 22.27 0.22 -2.32 16 7 C -0.07 -1.54 4.37 -19.87 -0.09 -1.63 16 8 C -0.10 -1.81 5.83 29.10 0.17 -1.64 16 9 C 0.52 12.64 7.79 87.66 0.68 13.33 16 10 O -0.58 -18.73 15.70 -3.03 -0.05 -18.78 16 11 N -0.71 -16.66 4.23 -442.52 -1.87 -18.53 16 12 C 0.16 4.21 2.78 44.99 0.13 4.33 16 13 H 0.08 2.16 7.58 -2.39 -0.02 2.14 16 14 C -0.12 -3.01 5.60 30.59 0.17 -2.84 16 15 C -0.10 -2.60 5.77 30.59 0.18 -2.43 16 16 C -0.13 -4.20 5.50 30.60 0.17 -4.03 16 17 C 0.18 6.31 2.60 45.00 0.12 6.42 16 18 H 0.05 1.69 6.44 -2.39 -0.02 1.68 16 19 N -0.74 -35.23 5.12 -322.95 -1.65 -36.88 16 20 C -0.23 -12.32 9.93 84.03 0.83 -11.49 16 21 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 22 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 23 N -0.97 -58.55 13.06 21.65 0.28 -58.26 16 24 Si 0.97 45.06 29.55 68.60 2.03 47.09 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 27 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 28 C -0.12 -3.66 5.08 30.60 0.16 -3.50 16 29 C -0.12 -2.57 9.36 22.27 0.21 -2.37 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 34 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16 35 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 38 H 0.13 1.65 8.09 -2.39 -0.02 1.63 16 39 H 0.12 1.71 8.09 -2.39 -0.02 1.69 16 40 H 0.41 8.62 6.87 -92.71 -0.64 7.98 16 41 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.06 1.55 7.60 -2.39 -0.02 1.53 16 45 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.37 19.39 7.80 -92.70 -0.72 18.67 16 48 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 49 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 51 H 0.12 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -68.15 408.05 2.92 -65.23 By element: Atomic # 1 Polarization: 40.72 SS G_CDS: -0.45 Total: 40.27 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: 4.64 Total: -20.13 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -3.24 Total: -113.68 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.05 Total: -18.78 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -68.15 2.92 -65.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981177480.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.047 kcal (2) G-P(sol) polarization free energy of solvation -68.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds