Wall clock time and date at job start Tue Mar 31 2020 16:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.46589 * 2 1 4 4 C 1.38256 * 120.00155 * 270.01821 * 3 2 1 5 5 C 1.38208 * 120.00010 * 179.78673 * 4 3 2 6 6 C 1.38260 * 120.00078 * 0.43570 * 5 4 3 7 7 C 1.38212 * 119.99650 * 359.52112 * 6 5 4 8 8 C 1.50707 * 119.99857 * 180.25737 * 7 6 5 9 9 C 1.50702 * 109.46969 * 90.00535 * 8 7 6 10 10 O 1.21287 * 119.99755 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00195 * 180.02562 * 9 8 7 12 12 C 1.46494 * 119.99974 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47365 * 324.99364 * 12 11 9 14 14 C 1.52999 * 109.47590 * 84.99987 * 12 11 9 15 15 C 1.53002 * 109.47421 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.46825 * 299.99564 * 15 14 12 17 17 C 1.53002 * 109.47279 * 59.99986 * 16 15 14 18 18 H 1.09007 * 109.46681 * 59.99692 * 17 16 15 19 19 N 1.46496 * 109.47342 * 179.97438 * 17 16 15 20 20 C 1.36936 * 120.00361 * 275.00275 * 19 17 16 21 21 H 1.08004 * 119.99571 * 359.97438 * 20 19 17 22 22 C 1.38812 * 120.00003 * 180.02562 * 20 19 17 23 23 N 1.31615 * 120.00371 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99763 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47534 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47558 * 119.99854 * 24 22 20 27 27 H 1.48502 * 109.46881 * 239.99909 * 24 22 20 28 28 C 1.52998 * 109.47007 * 300.00407 * 17 16 15 29 29 C 1.38215 * 119.99787 * 90.00594 * 3 2 1 30 30 H 1.08998 * 109.47218 * 299.99254 * 1 2 3 31 31 H 1.09001 * 109.47009 * 60.00104 * 1 2 3 32 32 H 1.09001 * 109.46664 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47218 * 240.00746 * 2 1 3 34 34 H 1.08993 * 109.47154 * 120.00179 * 2 1 3 35 35 H 1.07998 * 120.00044 * 0.02562 * 4 3 2 36 36 H 1.08004 * 120.00275 * 180.23484 * 5 4 3 37 37 H 1.08002 * 120.00476 * 179.80744 * 6 5 4 38 38 H 1.09005 * 109.47126 * 210.00184 * 8 7 6 39 39 H 1.08998 * 109.47249 * 330.00814 * 8 7 6 40 40 H 0.96997 * 119.99867 * 359.97438 * 11 9 8 41 41 H 1.09004 * 109.46841 * 299.99957 * 14 12 11 42 42 H 1.09000 * 109.47275 * 59.99321 * 14 12 11 43 43 H 1.08995 * 109.47199 * 179.97438 * 15 14 12 44 44 H 1.08994 * 109.47170 * 59.99238 * 15 14 12 45 45 H 1.09007 * 109.47515 * 300.00189 * 16 15 14 46 46 H 1.08995 * 109.47586 * 180.02562 * 16 15 14 47 47 H 0.97003 * 119.99864 * 94.99992 * 19 17 16 48 48 H 0.96993 * 120.00588 * 179.97438 * 23 22 20 49 49 H 1.09007 * 109.46816 * 299.99203 * 28 17 16 50 50 H 1.09006 * 109.47229 * 179.97438 * 28 17 16 51 51 H 1.08005 * 120.00045 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2622 2.0728 -1.1973 5 6 2.7186 3.3774 -1.1973 6 6 2.9537 4.0275 0.0001 7 6 2.7229 3.3761 1.1970 8 6 2.9737 4.0866 2.5022 9 6 1.7176 4.7970 2.9367 10 8 0.7175 4.7330 2.2536 11 7 1.7060 5.5043 4.0839 12 6 0.4848 6.1943 4.5066 13 1 -0.0449 6.5657 3.6293 14 6 -0.4137 5.2195 5.2702 15 6 -1.6894 5.9401 5.7111 16 6 -1.3232 7.1149 6.6202 17 6 -0.4246 8.0899 5.8567 18 1 -0.9542 8.4608 4.9791 19 7 -0.0744 9.2151 6.7269 20 6 -0.9210 10.2859 6.8358 21 1 -1.8468 10.3010 6.2797 22 6 -0.5889 11.3523 7.6600 23 7 0.5394 11.3341 8.3373 24 14 -1.7442 12.8126 7.8090 25 1 -2.9368 12.5898 6.9526 26 1 -2.1711 12.9638 9.2232 27 1 -1.0428 14.0454 7.3692 28 6 0.8510 7.3692 5.4157 29 6 2.2626 2.0724 1.1970 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.0816 1.5640 -2.1326 36 1 2.8947 3.8880 -2.1326 37 1 3.3133 5.0459 0.0002 38 1 3.2615 3.3600 3.2620 39 1 3.7755 4.8134 2.3720 40 1 2.5059 5.5558 4.6300 41 1 -0.6750 4.3826 4.6224 42 1 0.1160 4.8481 6.1475 43 1 -2.3297 5.2454 6.2547 44 1 -2.2189 6.3110 4.8336 45 1 -0.7936 6.7440 7.4978 46 1 -2.2319 7.6281 6.9347 47 1 0.7572 9.2016 7.2261 48 1 0.7717 12.0794 8.9130 49 1 1.3806 6.9983 6.2933 50 1 1.4910 8.0637 4.8713 51 1 2.0824 1.5633 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981177481.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:10 Heat of formation + Delta-G solvation = -34.396441 kcal Electronic energy + Delta-G solvation = -27625.084978 eV Core-core repulsion = 23908.854759 eV Total energy + Delta-G solvation = -3716.230219 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.31034 -39.33682 -37.87407 -34.77963 -34.53147 -33.34804 -32.58430 -31.12933 -29.87739 -29.46509 -27.98148 -27.23816 -24.17299 -23.75689 -22.63681 -21.97204 -21.49543 -20.54816 -20.15804 -19.32968 -17.34811 -16.79426 -16.72832 -16.16453 -16.03543 -15.23816 -14.99941 -14.64614 -14.39820 -14.03697 -13.92753 -13.78355 -13.72357 -13.51734 -13.32481 -13.19434 -13.08868 -12.72564 -12.34253 -12.21918 -12.12609 -11.97032 -11.93475 -11.49961 -11.08050 -10.99985 -10.98328 -10.92767 -10.89055 -10.72094 -10.34018 -10.26460 -10.16910 -10.03304 -9.70508 -9.58295 -8.96939 -8.92893 -8.86324 -8.76346 -6.96565 -5.77574 -3.06038 1.16383 1.24655 2.65035 3.15401 3.42899 3.49080 3.50905 3.66761 4.39087 4.48372 4.57762 4.63911 4.81122 4.88428 4.92090 5.01028 5.03679 5.09090 5.12508 5.22272 5.24353 5.33707 5.34740 5.41760 5.50745 5.61063 5.61819 5.63512 5.69641 5.75953 5.86883 5.88391 5.90683 5.97240 5.97959 6.03759 6.14775 6.29675 6.31293 6.34957 6.39353 6.44407 6.52491 6.55255 6.64809 6.73462 6.84575 6.96940 7.12505 7.54166 7.71060 8.25902 8.41241 9.52484 10.09815 10.44602 11.45246 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023113 B = 0.002024 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.132266 B =13831.754316 C =14317.410567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.083 4.083 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.110 4.110 7 C -0.060 4.060 8 C -0.105 4.105 9 C 0.513 3.487 10 O -0.532 6.532 11 N -0.726 5.726 12 C 0.149 3.851 13 H 0.086 0.914 14 C -0.123 4.123 15 C -0.115 4.115 16 C -0.136 4.136 17 C 0.183 3.817 18 H 0.048 0.952 19 N -0.724 5.724 20 C -0.236 4.236 21 H 0.071 0.929 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.906 3.094 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.129 4.129 29 C -0.103 4.103 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.399 0.601 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.064 0.936 50 H 0.068 0.932 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.817 -22.909 -15.368 28.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.083 4.083 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.128 4.128 7 C -0.060 4.060 8 C -0.145 4.145 9 C 0.298 3.702 10 O -0.408 6.408 11 N -0.376 5.376 12 C 0.045 3.955 13 H 0.104 0.896 14 C -0.162 4.162 15 C -0.153 4.153 16 C -0.177 4.177 17 C 0.073 3.927 18 H 0.066 0.934 19 N -0.365 5.365 20 C -0.367 4.367 21 H 0.089 0.911 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.737 3.263 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.167 4.167 29 C -0.121 4.121 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.233 0.767 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.216 0.784 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.086 0.914 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.948 -22.796 -15.881 28.412 hybrid contribution 0.068 0.967 0.701 1.196 sum 6.016 -21.829 -15.181 27.260 Atomic orbital electron populations 1.21752 0.94623 1.01564 1.02554 1.20531 0.96323 0.92623 1.02612 1.19832 0.99055 0.96292 0.93104 1.20981 1.00408 0.95081 0.97374 1.21068 0.99585 0.94884 0.97870 1.20972 1.00348 0.99437 0.92012 1.19247 0.99165 0.93953 0.93631 1.20711 0.97105 1.00417 0.96262 1.20473 0.89845 0.79070 0.80789 1.90731 1.35227 1.61156 1.53693 1.46182 1.15373 1.52203 1.23873 1.21009 0.84756 0.91927 0.97855 0.89573 1.21871 0.96648 0.98115 0.99525 1.21484 0.96295 0.97723 0.99839 1.22286 1.01172 0.95739 0.98483 1.20099 0.91790 0.87727 0.93122 0.93401 1.42410 1.24364 1.17295 1.52410 1.19295 1.00497 0.95471 1.21415 0.91094 1.24739 0.97587 0.98780 0.99997 1.69663 1.23460 1.32326 1.32790 0.86131 0.79995 0.82864 0.77312 1.20534 1.21913 1.21913 1.22084 1.00077 0.95895 0.98692 1.20817 0.99365 0.94343 0.97559 0.92332 0.92548 0.92489 0.91185 0.91148 0.86380 0.86137 0.86270 0.88053 0.87929 0.76748 0.92288 0.92127 0.92556 0.92219 0.92680 0.91915 0.78351 0.93607 0.91738 0.91366 0.86422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 37.16 0.37 -0.75 16 2 C -0.08 -0.61 6.06 -27.88 -0.17 -0.78 16 3 C -0.08 -0.79 5.13 -104.62 -0.54 -1.32 16 4 C -0.12 -1.11 9.70 -39.59 -0.38 -1.50 16 5 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 6 C -0.11 -1.13 9.70 -39.58 -0.38 -1.52 16 7 C -0.06 -0.62 4.37 -104.62 -0.46 -1.08 16 8 C -0.11 -0.91 5.83 -29.03 -0.17 -1.08 16 9 C 0.51 6.30 7.79 -10.99 -0.09 6.21 16 10 O -0.53 -8.82 15.70 5.55 0.09 -8.74 16 11 N -0.73 -8.23 5.08 -53.81 -0.27 -8.50 16 12 C 0.15 2.08 2.45 -67.93 -0.17 1.91 16 13 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 14 C -0.12 -1.67 5.49 -26.73 -0.15 -1.82 16 15 C -0.11 -1.67 5.92 -26.73 -0.16 -1.83 16 16 C -0.14 -2.41 5.50 -26.73 -0.15 -2.55 16 17 C 0.18 3.55 2.77 -67.93 -0.19 3.37 16 18 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 19 N -0.72 -17.81 5.12 -53.42 -0.27 -18.08 16 20 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 21 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 22 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 23 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 24 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 C -0.13 -2.02 4.86 -26.73 -0.13 -2.15 16 29 C -0.10 -1.05 9.36 -39.58 -0.37 -1.42 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 34 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.10 0.65 8.09 -51.93 -0.42 0.23 16 39 H 0.10 0.69 8.09 -51.93 -0.42 0.27 16 40 H 0.40 3.45 8.60 -40.82 -0.35 3.10 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 48 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 51 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 412.49 15.07 6.22 6.22 Total: -1.00 -32.90 412.49 -11.36 -44.26 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -9.05 Total: 9.70 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -3.77 Total: -14.97 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.18 Total: -53.84 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.90 -11.36 -44.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981177481.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.863 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds