Wall clock time and date at job start Tue Mar 31 2020 16:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.46589 * 2 1 4 4 C 1.38256 * 120.00155 * 270.01821 * 3 2 1 5 5 C 1.38208 * 120.00010 * 179.78673 * 4 3 2 6 6 C 1.38260 * 120.00078 * 0.43570 * 5 4 3 7 7 C 1.38212 * 119.99650 * 359.52112 * 6 5 4 8 8 C 1.50707 * 119.99857 * 180.25737 * 7 6 5 9 9 C 1.50702 * 109.46969 * 90.00535 * 8 7 6 10 10 O 1.21287 * 119.99755 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00195 * 180.02562 * 9 8 7 12 12 C 1.46494 * 119.99974 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47365 * 324.99364 * 12 11 9 14 14 C 1.52999 * 109.47590 * 84.99987 * 12 11 9 15 15 C 1.53002 * 109.47421 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.46825 * 299.99564 * 15 14 12 17 17 C 1.53002 * 109.47279 * 59.99986 * 16 15 14 18 18 H 1.09007 * 109.46681 * 59.99692 * 17 16 15 19 19 N 1.46496 * 109.47342 * 179.97438 * 17 16 15 20 20 C 1.36936 * 120.00361 * 275.00275 * 19 17 16 21 21 H 1.08004 * 119.99571 * 359.97438 * 20 19 17 22 22 C 1.38812 * 120.00003 * 180.02562 * 20 19 17 23 23 N 1.31615 * 120.00371 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99763 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47534 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47558 * 119.99854 * 24 22 20 27 27 H 1.48502 * 109.46881 * 239.99909 * 24 22 20 28 28 C 1.52998 * 109.47007 * 300.00407 * 17 16 15 29 29 C 1.38215 * 119.99787 * 90.00594 * 3 2 1 30 30 H 1.08998 * 109.47218 * 299.99254 * 1 2 3 31 31 H 1.09001 * 109.47009 * 60.00104 * 1 2 3 32 32 H 1.09001 * 109.46664 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47218 * 240.00746 * 2 1 3 34 34 H 1.08993 * 109.47154 * 120.00179 * 2 1 3 35 35 H 1.07998 * 120.00044 * 0.02562 * 4 3 2 36 36 H 1.08004 * 120.00275 * 180.23484 * 5 4 3 37 37 H 1.08002 * 120.00476 * 179.80744 * 6 5 4 38 38 H 1.09005 * 109.47126 * 210.00184 * 8 7 6 39 39 H 1.08998 * 109.47249 * 330.00814 * 8 7 6 40 40 H 0.96997 * 119.99867 * 359.97438 * 11 9 8 41 41 H 1.09004 * 109.46841 * 299.99957 * 14 12 11 42 42 H 1.09000 * 109.47275 * 59.99321 * 14 12 11 43 43 H 1.08995 * 109.47199 * 179.97438 * 15 14 12 44 44 H 1.08994 * 109.47170 * 59.99238 * 15 14 12 45 45 H 1.09007 * 109.47515 * 300.00189 * 16 15 14 46 46 H 1.08995 * 109.47586 * 180.02562 * 16 15 14 47 47 H 0.97003 * 119.99864 * 94.99992 * 19 17 16 48 48 H 0.96993 * 120.00588 * 179.97438 * 23 22 20 49 49 H 1.09007 * 109.46816 * 299.99203 * 28 17 16 50 50 H 1.09006 * 109.47229 * 179.97438 * 28 17 16 51 51 H 1.08005 * 120.00045 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2622 2.0728 -1.1973 5 6 2.7186 3.3774 -1.1973 6 6 2.9537 4.0275 0.0001 7 6 2.7229 3.3761 1.1970 8 6 2.9737 4.0866 2.5022 9 6 1.7176 4.7970 2.9367 10 8 0.7175 4.7330 2.2536 11 7 1.7060 5.5043 4.0839 12 6 0.4848 6.1943 4.5066 13 1 -0.0449 6.5657 3.6293 14 6 -0.4137 5.2195 5.2702 15 6 -1.6894 5.9401 5.7111 16 6 -1.3232 7.1149 6.6202 17 6 -0.4246 8.0899 5.8567 18 1 -0.9542 8.4608 4.9791 19 7 -0.0744 9.2151 6.7269 20 6 -0.9210 10.2859 6.8358 21 1 -1.8468 10.3010 6.2797 22 6 -0.5889 11.3523 7.6600 23 7 0.5394 11.3341 8.3373 24 14 -1.7442 12.8126 7.8090 25 1 -2.9368 12.5898 6.9526 26 1 -2.1711 12.9638 9.2232 27 1 -1.0428 14.0454 7.3692 28 6 0.8510 7.3692 5.4157 29 6 2.2626 2.0724 1.1970 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.0816 1.5640 -2.1326 36 1 2.8947 3.8880 -2.1326 37 1 3.3133 5.0459 0.0002 38 1 3.2615 3.3600 3.2620 39 1 3.7755 4.8134 2.3720 40 1 2.5059 5.5558 4.6300 41 1 -0.6750 4.3826 4.6224 42 1 0.1160 4.8481 6.1475 43 1 -2.3297 5.2454 6.2547 44 1 -2.2189 6.3110 4.8336 45 1 -0.7936 6.7440 7.4978 46 1 -2.2319 7.6281 6.9347 47 1 0.7572 9.2016 7.2261 48 1 0.7717 12.0794 8.9130 49 1 1.3806 6.9983 6.2933 50 1 1.4910 8.0637 4.8713 51 1 2.0824 1.5633 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981177481.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:09 Heat of formation + Delta-G solvation = -52.775137 kcal Electronic energy + Delta-G solvation = -27625.881938 eV Core-core repulsion = 23908.854759 eV Total energy + Delta-G solvation = -3717.027179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.24841 -40.21547 -39.12974 -36.23606 -35.29589 -34.79382 -33.35816 -32.90992 -30.89763 -30.32900 -29.52072 -28.14844 -25.71364 -24.79925 -23.64456 -23.11268 -22.56990 -21.57064 -21.14826 -20.59826 -19.17566 -17.94469 -17.59235 -17.23877 -16.76870 -16.45425 -16.02113 -15.91036 -15.64329 -15.39659 -15.07902 -15.04283 -14.72202 -14.62313 -14.41626 -14.24595 -13.90068 -13.87836 -13.59625 -13.40508 -12.97979 -12.91224 -12.86801 -12.80044 -12.58516 -12.25613 -12.13803 -12.13074 -12.03084 -11.97825 -11.69251 -11.65034 -11.61598 -11.48276 -11.37857 -10.89351 -10.80244 -10.00715 -9.65911 -9.47719 -9.00257 -7.94683 -5.22321 0.44428 0.53245 1.46676 1.46980 1.56876 1.70599 2.21805 2.56109 2.92107 3.38637 3.63655 3.70104 3.84459 3.87121 3.98083 4.02664 4.08020 4.25043 4.28220 4.30611 4.31925 4.40660 4.46146 4.51101 4.53792 4.57570 4.59078 4.63330 4.67882 4.71241 4.76261 4.79736 5.00908 5.03119 5.07202 5.13224 5.17127 5.21342 5.21928 5.25002 5.35147 5.37837 5.49795 5.50746 5.55006 5.59730 5.66107 5.68846 5.75254 6.16590 6.28428 6.64064 7.33619 7.34662 8.10272 8.34252 9.28792 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023113 B = 0.002024 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.132266 B =13831.754316 C =14317.410567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.092 4.092 4 C -0.130 4.130 5 C -0.127 4.127 6 C -0.129 4.129 7 C -0.075 4.075 8 C -0.097 4.097 9 C 0.513 3.487 10 O -0.579 6.579 11 N -0.715 5.715 12 C 0.159 3.841 13 H 0.063 0.937 14 C -0.114 4.114 15 C -0.107 4.107 16 C -0.126 4.126 17 C 0.176 3.824 18 H 0.033 0.967 19 N -0.735 5.735 20 C -0.235 4.235 21 H 0.071 0.929 22 C -0.076 4.076 23 N -0.968 5.968 24 Si 0.968 3.032 25 H -0.269 1.269 26 H -0.293 1.293 27 H -0.294 1.294 28 C -0.113 4.113 29 C -0.119 4.119 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.415 0.585 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.040 0.960 47 H 0.374 0.626 48 H 0.250 0.750 49 H 0.077 0.923 50 H 0.060 0.940 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.249 -24.616 -15.840 30.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.092 4.092 4 C -0.148 4.148 5 C -0.145 4.145 6 C -0.147 4.147 7 C -0.075 4.075 8 C -0.136 4.136 9 C 0.300 3.700 10 O -0.458 6.458 11 N -0.366 5.366 12 C 0.054 3.946 13 H 0.081 0.919 14 C -0.153 4.153 15 C -0.146 4.146 16 C -0.166 4.166 17 C 0.067 3.933 18 H 0.051 0.949 19 N -0.375 5.375 20 C -0.368 4.368 21 H 0.089 0.911 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.798 3.202 25 H -0.193 1.193 26 H -0.220 1.220 27 H -0.221 1.221 28 C -0.152 4.152 29 C -0.137 4.137 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.252 0.748 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.059 0.941 47 H 0.206 0.794 48 H 0.059 0.941 49 H 0.095 0.905 50 H 0.079 0.921 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.388 -24.538 -16.367 30.179 hybrid contribution -0.085 1.445 0.773 1.641 sum 6.303 -23.093 -15.593 28.569 Atomic orbital electron populations 1.21736 0.94901 1.02267 1.01433 1.20568 0.95952 0.91602 1.03752 1.20156 0.98669 0.97348 0.93062 1.21276 1.00154 0.95195 0.98198 1.21364 0.99373 0.95280 0.98453 1.21217 1.01005 0.99968 0.92527 1.19500 0.99379 0.94307 0.94355 1.20744 0.95528 1.01116 0.96207 1.21086 0.90385 0.78430 0.80058 1.90717 1.37227 1.62833 1.55024 1.46007 1.15114 1.51481 1.24031 1.20687 0.85813 0.91622 0.96511 0.91915 1.21791 0.95997 0.97599 0.99911 1.21414 0.97229 0.96817 0.99113 1.22090 0.99582 0.96173 0.98767 1.20311 0.93900 0.87095 0.91951 0.94879 1.42574 1.23666 1.18175 1.53079 1.19607 1.00589 0.96157 1.20397 0.91084 1.25495 0.99271 1.01532 1.00505 1.69799 1.25158 1.33003 1.33897 0.85143 0.78466 0.79528 0.77077 1.19344 1.22050 1.22092 1.21864 0.97954 0.96057 0.99351 1.21060 0.99680 0.94648 0.98271 0.93927 0.93159 0.90879 0.89776 0.90281 0.84651 0.84591 0.85689 0.85270 0.85633 0.74806 0.92276 0.90595 0.90643 0.92687 0.92650 0.94109 0.79380 0.94066 0.90470 0.92105 0.85635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.89 71.98 0.71 -1.33 16 2 C -0.08 -1.07 6.06 29.85 0.18 -0.88 16 3 C -0.09 -1.65 5.13 -19.86 -0.10 -1.76 16 4 C -0.13 -2.28 9.70 22.27 0.22 -2.06 16 5 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 6 C -0.13 -2.57 9.70 22.27 0.22 -2.36 16 7 C -0.07 -1.48 4.37 -19.86 -0.09 -1.56 16 8 C -0.10 -1.46 5.83 29.10 0.17 -1.29 16 9 C 0.51 11.83 7.79 87.66 0.68 12.51 16 10 O -0.58 -18.97 15.70 -3.05 -0.05 -19.02 16 11 N -0.71 -14.82 5.08 -442.54 -2.25 -17.07 16 12 C 0.16 4.26 2.45 44.99 0.11 4.37 16 13 H 0.06 2.02 7.58 -2.39 -0.02 2.00 16 14 C -0.11 -2.89 5.49 30.59 0.17 -2.72 16 15 C -0.11 -2.97 5.92 30.60 0.18 -2.79 16 16 C -0.13 -4.38 5.50 30.60 0.17 -4.21 16 17 C 0.18 6.85 2.77 44.99 0.12 6.98 16 18 H 0.03 1.38 8.08 -2.38 -0.02 1.36 16 19 N -0.74 -36.54 5.12 -322.94 -1.65 -38.20 16 20 C -0.24 -13.09 9.93 84.03 0.83 -12.25 16 21 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 22 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 23 N -0.97 -58.74 13.06 21.65 0.28 -58.46 16 24 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 27 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 28 C -0.11 -3.46 4.86 30.59 0.15 -3.31 16 29 C -0.12 -2.29 9.36 22.27 0.21 -2.08 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 34 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 35 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 36 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.13 1.24 8.09 -2.38 -0.02 1.22 16 39 H 0.13 1.33 8.09 -2.39 -0.02 1.31 16 40 H 0.42 6.01 8.60 -92.71 -0.80 5.22 16 41 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 45 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 46 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.37 19.69 7.80 -92.71 -0.72 18.97 16 48 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 49 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 50 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 51 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -71.80 412.49 2.37 -69.43 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -0.62 Total: 35.60 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: 4.62 Total: -20.73 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -3.62 Total: -113.73 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.05 Total: -19.02 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -71.80 2.37 -69.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981177481.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.654 kcal (2) G-P(sol) polarization free energy of solvation -71.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds