Wall clock time and date at job start Tue Mar 31 2020 16:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47203 * 2 1 4 4 C 1.38238 * 119.99946 * 89.99981 * 3 2 1 5 5 C 1.38237 * 119.99874 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00157 * 359.96563 * 5 4 3 7 7 C 1.50697 * 119.99862 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47437 * 89.99788 * 7 6 5 9 9 O 1.21278 * 119.99744 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00177 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00056 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46845 * 35.00845 * 11 10 8 13 13 C 1.52997 * 109.47473 * 275.00296 * 11 10 8 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47328 * 60.00126 * 14 13 11 16 16 C 1.53002 * 109.46891 * 299.99597 * 15 14 13 17 17 H 1.09001 * 109.47142 * 300.00176 * 16 15 14 18 18 N 1.46496 * 109.47237 * 180.02562 * 16 15 14 19 19 C 1.36934 * 120.00372 * 84.99846 * 18 16 15 20 20 H 1.08006 * 119.99779 * 0.02562 * 19 18 16 21 21 C 1.38815 * 120.00696 * 180.02562 * 19 18 16 22 22 N 1.31616 * 119.99613 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00191 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46732 * 90.00207 * 23 21 19 25 25 H 1.48500 * 109.47083 * 210.00048 * 23 21 19 26 26 H 1.48495 * 109.47095 * 330.00262 * 23 21 19 27 27 C 1.52997 * 109.46978 * 60.00410 * 16 15 14 28 28 C 1.38242 * 120.00051 * 0.26611 * 6 5 4 29 29 C 1.38237 * 120.00004 * 269.97870 * 3 2 1 30 30 H 1.08999 * 109.47218 * 299.99948 * 1 2 3 31 31 H 1.08996 * 109.47200 * 59.99746 * 1 2 3 32 32 H 1.08995 * 109.47305 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46732 * 240.00239 * 2 1 3 34 34 H 1.08996 * 109.47200 * 120.00254 * 2 1 3 35 35 H 1.08000 * 119.99941 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.99800 * 179.97438 * 5 4 3 37 37 H 1.08996 * 109.47433 * 329.99389 * 7 6 5 38 38 H 1.09000 * 109.46832 * 209.99065 * 7 6 5 39 39 H 0.97001 * 120.00396 * 359.97438 * 10 8 7 40 40 H 1.09002 * 109.47153 * 59.99757 * 13 11 10 41 41 H 1.09001 * 109.46832 * 299.99948 * 13 11 10 42 42 H 1.09004 * 109.46724 * 180.02562 * 14 13 11 43 43 H 1.09001 * 109.47194 * 299.99650 * 14 13 11 44 44 H 1.08992 * 109.47554 * 59.99639 * 15 14 13 45 45 H 1.09004 * 109.47108 * 179.97438 * 15 14 13 46 46 H 0.97005 * 120.00318 * 265.00794 * 18 16 15 47 47 H 0.97000 * 120.00432 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.47375 * 59.99908 * 27 16 15 49 49 H 1.09000 * 109.47140 * 179.97438 * 27 16 15 50 50 H 1.07996 * 119.99706 * 179.73091 * 28 6 5 51 51 H 1.07999 * 120.00132 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7240 3.3755 1.1972 6 6 2.9556 4.0268 0.0000 7 6 3.4580 5.4476 0.0001 8 6 4.9650 5.4476 0.0017 9 8 5.5714 4.3973 0.0031 10 7 5.6388 6.6147 0.0015 11 6 7.1038 6.6148 0.0035 12 1 7.4680 5.7725 -0.5847 13 6 7.6119 6.4904 1.4413 14 6 9.1419 6.4911 1.4435 15 6 9.6522 7.7982 0.8336 16 6 9.1442 7.9225 -0.6043 17 1 9.5087 7.0803 -1.1925 18 7 9.6333 9.1737 -1.1886 19 6 10.8756 9.2218 -1.7625 20 1 11.4948 8.3371 -1.7848 21 6 11.3393 10.4075 -2.3157 22 7 10.5850 11.4857 -2.2881 23 14 13.0338 10.4728 -3.0992 24 1 12.9260 10.1322 -4.5406 25 1 13.5938 11.8405 -2.9542 26 1 13.9285 9.4975 -2.4257 27 6 7.6142 7.9219 -0.6065 28 6 2.7207 3.3767 -1.1972 29 6 2.2632 2.0723 -1.1972 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.0823 1.5634 2.1325 36 1 2.9036 3.8848 2.1325 37 1 3.0937 5.9617 0.8894 38 1 3.0957 5.9610 -0.8905 39 1 5.1539 7.4548 -0.0001 40 1 7.2479 5.5595 1.8761 41 1 7.2477 7.3328 2.0294 42 1 9.5038 6.4021 2.4678 43 1 9.5064 5.6489 0.8552 44 1 9.2877 8.6403 1.4217 45 1 10.7422 7.7988 0.8355 46 1 9.0772 9.9682 -1.1688 47 1 10.9088 12.3142 -2.6749 48 1 7.2497 8.7640 -0.0183 49 1 7.2523 8.0109 -1.6308 50 1 2.8975 3.8871 -2.1324 51 1 2.0831 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981356554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:13 Heat of formation + Delta-G solvation = -34.321045 kcal Electronic energy + Delta-G solvation = -27380.375139 eV Core-core repulsion = 23664.148189 eV Total energy + Delta-G solvation = -3716.226949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.29844 -39.34181 -37.88365 -34.94100 -34.56630 -33.33017 -31.61747 -31.11281 -31.08759 -29.41677 -27.89512 -27.09009 -23.84691 -23.56630 -22.92057 -22.06043 -21.49262 -20.67585 -20.24651 -19.36020 -17.35553 -16.77008 -16.62941 -16.07363 -15.96818 -15.29586 -14.97503 -14.60904 -14.39126 -14.03645 -14.00563 -13.82287 -13.74603 -13.57209 -13.45528 -13.16349 -13.08221 -12.75637 -12.36537 -12.26552 -12.08460 -11.96503 -11.93337 -11.47820 -11.08490 -11.03632 -10.99083 -10.92685 -10.87969 -10.71563 -10.33315 -10.27763 -10.16350 -10.04709 -9.69643 -9.57205 -9.05257 -8.95240 -8.85599 -8.67942 -6.96236 -5.77123 -3.05582 1.13556 1.27489 2.65516 3.15550 3.43602 3.49111 3.50405 3.66742 4.40108 4.53936 4.58030 4.58428 4.77340 4.83226 4.84419 5.02396 5.03168 5.07267 5.13548 5.21457 5.22521 5.32859 5.34610 5.42099 5.51145 5.56076 5.61686 5.63430 5.70012 5.75669 5.80127 5.88357 5.90994 5.91485 5.98349 6.04118 6.15152 6.23948 6.31644 6.35380 6.42371 6.44037 6.52858 6.55667 6.65189 6.73834 6.84514 6.97342 7.12899 7.54628 7.70911 8.26374 8.41668 9.52875 10.10226 10.45071 11.45613 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026171 B = 0.001867 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.624679 B =14993.170916 C =15272.570434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.067 4.067 7 C -0.104 4.104 8 C 0.512 3.488 9 O -0.532 6.532 10 N -0.726 5.726 11 C 0.149 3.851 12 H 0.086 0.914 13 C -0.123 4.123 14 C -0.115 4.115 15 C -0.136 4.136 16 C 0.183 3.817 17 H 0.048 0.952 18 N -0.724 5.724 19 C -0.237 4.237 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.129 4.129 28 C -0.102 4.102 29 C -0.117 4.117 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.399 0.601 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.062 0.938 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.064 0.936 49 H 0.068 0.932 50 H 0.120 0.880 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.923 -17.452 7.622 29.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.067 4.067 7 C -0.144 4.144 8 C 0.298 3.702 9 O -0.409 6.409 10 N -0.376 5.376 11 C 0.045 3.955 12 H 0.104 0.896 13 C -0.162 4.162 14 C -0.154 4.154 15 C -0.177 4.177 16 C 0.073 3.927 17 H 0.066 0.934 18 N -0.364 5.364 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.168 4.168 28 C -0.120 4.120 29 C -0.135 4.135 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.233 0.767 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.216 0.784 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.138 0.862 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.297 -18.231 7.528 29.028 hybrid contribution 0.623 0.948 -0.387 1.199 sum -20.675 -17.283 7.141 27.877 Atomic orbital electron populations 1.21743 0.94786 1.01605 1.02187 1.20539 0.96086 0.92813 1.02840 1.19869 0.99280 0.96103 0.93264 1.20941 1.00394 0.94771 0.97444 1.20941 0.98847 0.94907 0.97325 1.19253 0.99160 0.94748 0.93584 1.20702 0.92887 0.95632 1.05217 1.20487 0.89497 0.83976 0.76234 1.90728 1.70180 1.31213 1.48729 1.46189 1.07793 1.08314 1.75353 1.21010 0.78119 0.99595 0.96808 0.89578 1.21871 0.96583 1.01427 0.96287 1.21487 0.94256 0.99164 1.00448 1.22283 1.01193 0.95479 0.98710 1.20100 0.89651 0.90890 0.92108 0.93402 1.42396 1.17892 1.07551 1.68608 1.19255 0.92628 0.95668 1.29287 0.91149 1.24730 0.98502 0.95875 1.01878 1.69656 1.36996 1.00670 1.50916 0.86203 0.84078 0.76745 0.79264 1.21757 1.21810 1.20761 1.22085 0.98344 0.95470 1.00864 1.20970 0.98710 0.94901 0.97400 1.20953 1.00309 0.94748 0.97475 0.92596 0.92567 0.92487 0.91081 0.91107 0.86289 0.86317 0.88059 0.87980 0.76747 0.92272 0.92130 0.92556 0.92218 0.92683 0.91916 0.78352 0.93567 0.91740 0.91364 0.86217 0.86243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.16 0.37 -0.49 16 2 C -0.09 -0.60 6.06 -27.89 -0.17 -0.76 16 3 C -0.09 -0.79 5.13 -104.62 -0.54 -1.33 16 4 C -0.12 -1.11 9.70 -39.58 -0.38 -1.50 16 5 C -0.10 -1.03 9.70 -39.58 -0.38 -1.41 16 6 C -0.07 -0.70 4.37 -104.62 -0.46 -1.15 16 7 C -0.10 -0.91 5.83 -29.03 -0.17 -1.08 16 8 C 0.51 6.32 7.79 -10.99 -0.09 6.23 16 9 O -0.53 -8.87 15.70 5.56 0.09 -8.78 16 10 N -0.73 -8.26 5.08 -53.81 -0.27 -8.53 16 11 C 0.15 2.09 2.46 -67.93 -0.17 1.92 16 12 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 13 C -0.12 -1.68 5.49 -26.73 -0.15 -1.83 16 14 C -0.11 -1.68 5.92 -26.73 -0.16 -1.84 16 15 C -0.14 -2.41 5.50 -26.73 -0.15 -2.56 16 16 C 0.18 3.56 2.77 -67.93 -0.19 3.37 16 17 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 18 N -0.72 -17.81 5.12 -53.43 -0.27 -18.09 16 19 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 20 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -27.96 13.06 55.49 0.72 -27.24 16 23 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 27 C -0.13 -2.02 4.86 -26.73 -0.13 -2.15 16 28 C -0.10 -1.05 9.70 -39.58 -0.38 -1.43 16 29 C -0.12 -1.13 9.70 -39.58 -0.38 -1.51 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 34 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.10 0.65 8.09 -51.93 -0.42 0.23 16 38 H 0.10 0.69 8.08 -51.93 -0.42 0.27 16 39 H 0.40 3.46 8.60 -40.82 -0.35 3.11 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.38 9.95 7.80 -40.82 -0.32 9.64 16 47 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 50 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 51 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 412.48 15.07 6.22 6.22 Total: -1.00 -32.91 412.48 -11.36 -44.27 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -9.05 Total: 9.49 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -3.77 Total: -14.70 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.18 Total: -53.86 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.91 -11.36 -44.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981356554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.947 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds