Wall clock time and date at job start Tue Mar 31 2020 16:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47203 * 2 1 4 4 C 1.38238 * 119.99946 * 89.99981 * 3 2 1 5 5 C 1.38237 * 119.99874 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00157 * 359.96563 * 5 4 3 7 7 C 1.50697 * 119.99862 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47437 * 89.99788 * 7 6 5 9 9 O 1.21278 * 119.99744 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00177 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00056 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46845 * 35.00845 * 11 10 8 13 13 C 1.52997 * 109.47473 * 275.00296 * 11 10 8 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47328 * 60.00126 * 14 13 11 16 16 C 1.53002 * 109.46891 * 299.99597 * 15 14 13 17 17 H 1.09001 * 109.47142 * 300.00176 * 16 15 14 18 18 N 1.46496 * 109.47237 * 180.02562 * 16 15 14 19 19 C 1.36934 * 120.00372 * 84.99846 * 18 16 15 20 20 H 1.08006 * 119.99779 * 0.02562 * 19 18 16 21 21 C 1.38815 * 120.00696 * 180.02562 * 19 18 16 22 22 N 1.31616 * 119.99613 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00191 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46732 * 90.00207 * 23 21 19 25 25 H 1.48500 * 109.47083 * 210.00048 * 23 21 19 26 26 H 1.48495 * 109.47095 * 330.00262 * 23 21 19 27 27 C 1.52997 * 109.46978 * 60.00410 * 16 15 14 28 28 C 1.38242 * 120.00051 * 0.26611 * 6 5 4 29 29 C 1.38237 * 120.00004 * 269.97870 * 3 2 1 30 30 H 1.08999 * 109.47218 * 299.99948 * 1 2 3 31 31 H 1.08996 * 109.47200 * 59.99746 * 1 2 3 32 32 H 1.08995 * 109.47305 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46732 * 240.00239 * 2 1 3 34 34 H 1.08996 * 109.47200 * 120.00254 * 2 1 3 35 35 H 1.08000 * 119.99941 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.99800 * 179.97438 * 5 4 3 37 37 H 1.08996 * 109.47433 * 329.99389 * 7 6 5 38 38 H 1.09000 * 109.46832 * 209.99065 * 7 6 5 39 39 H 0.97001 * 120.00396 * 359.97438 * 10 8 7 40 40 H 1.09002 * 109.47153 * 59.99757 * 13 11 10 41 41 H 1.09001 * 109.46832 * 299.99948 * 13 11 10 42 42 H 1.09004 * 109.46724 * 180.02562 * 14 13 11 43 43 H 1.09001 * 109.47194 * 299.99650 * 14 13 11 44 44 H 1.08992 * 109.47554 * 59.99639 * 15 14 13 45 45 H 1.09004 * 109.47108 * 179.97438 * 15 14 13 46 46 H 0.97005 * 120.00318 * 265.00794 * 18 16 15 47 47 H 0.97000 * 120.00432 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.47375 * 59.99908 * 27 16 15 49 49 H 1.09000 * 109.47140 * 179.97438 * 27 16 15 50 50 H 1.07996 * 119.99706 * 179.73091 * 28 6 5 51 51 H 1.07999 * 120.00132 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7240 3.3755 1.1972 6 6 2.9556 4.0268 0.0000 7 6 3.4580 5.4476 0.0001 8 6 4.9650 5.4476 0.0017 9 8 5.5714 4.3973 0.0031 10 7 5.6388 6.6147 0.0015 11 6 7.1038 6.6148 0.0035 12 1 7.4680 5.7725 -0.5847 13 6 7.6119 6.4904 1.4413 14 6 9.1419 6.4911 1.4435 15 6 9.6522 7.7982 0.8336 16 6 9.1442 7.9225 -0.6043 17 1 9.5087 7.0803 -1.1925 18 7 9.6333 9.1737 -1.1886 19 6 10.8756 9.2218 -1.7625 20 1 11.4948 8.3371 -1.7848 21 6 11.3393 10.4075 -2.3157 22 7 10.5850 11.4857 -2.2881 23 14 13.0338 10.4728 -3.0992 24 1 12.9260 10.1322 -4.5406 25 1 13.5938 11.8405 -2.9542 26 1 13.9285 9.4975 -2.4257 27 6 7.6142 7.9219 -0.6065 28 6 2.7207 3.3767 -1.1972 29 6 2.2632 2.0723 -1.1972 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.0823 1.5634 2.1325 36 1 2.9036 3.8848 2.1325 37 1 3.0937 5.9617 0.8894 38 1 3.0957 5.9610 -0.8905 39 1 5.1539 7.4548 -0.0001 40 1 7.2479 5.5595 1.8761 41 1 7.2477 7.3328 2.0294 42 1 9.5038 6.4021 2.4678 43 1 9.5064 5.6489 0.8552 44 1 9.2877 8.6403 1.4217 45 1 10.7422 7.7988 0.8355 46 1 9.0772 9.9682 -1.1688 47 1 10.9088 12.3142 -2.6749 48 1 7.2497 8.7640 -0.0183 49 1 7.2523 8.0109 -1.6308 50 1 2.8975 3.8871 -2.1324 51 1 2.0831 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981356554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:12 Heat of formation + Delta-G solvation = -52.670102 kcal Electronic energy + Delta-G solvation = -27381.170813 eV Core-core repulsion = 23664.148189 eV Total energy + Delta-G solvation = -3717.022624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.23895 -40.21274 -39.13847 -36.24469 -35.47172 -34.78936 -32.96537 -32.29250 -31.78250 -30.62800 -29.45387 -27.88424 -25.70907 -24.36148 -23.62095 -23.26689 -22.71905 -21.57093 -21.25268 -20.70626 -19.18013 -17.94687 -17.60739 -16.94778 -16.79506 -16.39721 -16.04548 -15.90377 -15.65870 -15.39049 -15.05892 -15.02091 -14.69842 -14.60008 -14.51414 -14.23700 -14.14790 -13.72715 -13.59416 -13.42986 -12.95197 -12.90429 -12.87287 -12.80364 -12.52475 -12.26247 -12.15291 -12.05184 -12.04050 -11.96945 -11.69469 -11.64360 -11.63766 -11.48075 -11.37550 -10.88199 -10.79018 -10.00405 -9.76932 -9.38875 -8.99813 -7.94183 -5.21823 0.42143 0.55505 1.47136 1.47961 1.56374 1.71181 2.22115 2.56597 2.92120 3.39111 3.64133 3.72245 3.86370 3.91535 3.94991 4.01614 4.09379 4.17080 4.22328 4.29679 4.31624 4.46391 4.49571 4.52011 4.54230 4.57823 4.60909 4.64088 4.68245 4.75252 4.76510 4.79657 5.02665 5.06486 5.09278 5.12854 5.17142 5.20771 5.22153 5.25148 5.35373 5.39063 5.49985 5.50937 5.54008 5.55654 5.66407 5.70654 5.76054 6.16346 6.28658 6.64626 7.34166 7.35081 8.10733 8.34821 9.29048 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026171 B = 0.001867 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.624679 B =14993.170916 C =15272.570434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.129 4.129 5 C -0.115 4.115 6 C -0.084 4.084 7 C -0.096 4.096 8 C 0.512 3.488 9 O -0.579 6.579 10 N -0.715 5.715 11 C 0.159 3.841 12 H 0.063 0.937 13 C -0.115 4.115 14 C -0.107 4.107 15 C -0.126 4.126 16 C 0.176 3.824 17 H 0.033 0.967 18 N -0.735 5.735 19 C -0.239 4.239 20 H 0.071 0.929 21 C -0.073 4.073 22 N -0.967 5.967 23 Si 0.968 3.032 24 H -0.288 1.288 25 H -0.295 1.295 26 H -0.272 1.272 27 C -0.114 4.114 28 C -0.119 4.119 29 C -0.130 4.130 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.415 0.585 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.040 0.960 46 H 0.374 0.626 47 H 0.250 0.750 48 H 0.077 0.923 49 H 0.060 0.940 50 H 0.126 0.874 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.133 -18.193 8.569 30.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.147 4.147 5 C -0.133 4.133 6 C -0.084 4.084 7 C -0.135 4.135 8 C 0.300 3.700 9 O -0.459 6.459 10 N -0.367 5.367 11 C 0.054 3.946 12 H 0.081 0.919 13 C -0.153 4.153 14 C -0.146 4.146 15 C -0.166 4.166 16 C 0.067 3.933 17 H 0.051 0.949 18 N -0.375 5.375 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.798 3.202 24 H -0.216 1.216 25 H -0.221 1.221 26 H -0.197 1.197 27 C -0.152 4.152 28 C -0.137 4.137 29 C -0.148 4.148 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.252 0.748 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.206 0.794 47 H 0.059 0.941 48 H 0.095 0.905 49 H 0.079 0.921 50 H 0.144 0.856 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.536 -18.991 8.494 30.670 hybrid contribution 0.969 1.093 -0.670 1.607 sum -21.567 -17.898 7.824 29.098 Atomic orbital electron populations 1.21714 0.93907 1.02376 1.01959 1.20582 0.96790 0.91542 1.03312 1.20180 0.98838 0.97146 0.93127 1.21229 1.00272 0.94917 0.98272 1.21211 0.98917 0.95363 0.97841 1.19500 0.99528 0.95722 0.93697 1.20731 0.89714 0.95361 1.07681 1.21111 0.90930 0.83132 0.74809 1.90713 1.71394 1.32866 1.50905 1.46016 1.06599 1.09198 1.74842 1.20687 0.79844 0.97404 0.96682 0.91924 1.21792 0.95543 1.02052 0.95922 1.21417 0.95110 0.96945 1.01125 1.22086 0.99733 0.97313 0.97451 1.20313 0.92216 0.88208 0.92551 0.94883 1.42556 1.17066 1.08880 1.68951 1.19586 0.93654 0.95534 1.28311 0.91101 1.25478 1.02048 0.95770 1.03276 1.69796 1.38601 1.00995 1.52402 0.85215 0.80214 0.76529 0.78281 1.21570 1.22118 1.19713 1.21866 0.95443 0.96977 1.00964 1.21212 0.99138 0.95446 0.97898 1.21214 1.00412 0.94880 0.98333 0.92730 0.92881 0.91212 0.90722 0.90525 0.84780 0.85161 0.85210 0.85717 0.74802 0.92234 0.90594 0.90651 0.92683 0.92655 0.94144 0.79385 0.94071 0.90466 0.92105 0.85636 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.89 71.98 0.71 -0.77 16 2 C -0.08 -1.08 6.06 29.85 0.18 -0.90 16 3 C -0.09 -1.64 5.13 -19.87 -0.10 -1.74 16 4 C -0.13 -2.31 9.70 22.27 0.22 -2.10 16 5 C -0.12 -2.18 9.70 22.27 0.22 -1.97 16 6 C -0.08 -1.64 4.37 -19.86 -0.09 -1.73 16 7 C -0.10 -1.43 5.83 29.10 0.17 -1.26 16 8 C 0.51 11.79 7.79 87.66 0.68 12.47 16 9 O -0.58 -18.99 15.70 -3.02 -0.05 -19.04 16 10 N -0.71 -14.81 5.08 -442.54 -2.25 -17.06 16 11 C 0.16 4.26 2.46 44.99 0.11 4.38 16 12 H 0.06 2.02 7.58 -2.39 -0.02 2.00 16 13 C -0.11 -2.89 5.49 30.59 0.17 -2.72 16 14 C -0.11 -2.98 5.92 30.59 0.18 -2.80 16 15 C -0.13 -4.38 5.50 30.59 0.17 -4.21 16 16 C 0.18 6.85 2.77 44.99 0.12 6.98 16 17 H 0.03 1.38 8.08 -2.39 -0.02 1.36 16 18 N -0.73 -36.54 5.12 -322.94 -1.65 -38.19 16 19 C -0.24 -13.29 9.93 84.03 0.83 -12.46 16 20 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 21 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 22 N -0.97 -58.64 13.06 21.65 0.28 -58.35 16 23 Si 0.97 46.35 29.55 68.60 2.03 48.38 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 25 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 26 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 27 C -0.11 -3.47 4.86 30.60 0.15 -3.32 16 28 C -0.12 -2.38 9.70 22.27 0.22 -2.16 16 29 C -0.13 -2.45 9.70 22.27 0.22 -2.23 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 34 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 35 H 0.13 1.86 8.06 -2.91 -0.02 1.83 16 36 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.13 1.21 8.09 -2.39 -0.02 1.19 16 38 H 0.12 1.31 8.08 -2.39 -0.02 1.29 16 39 H 0.42 6.00 8.60 -92.71 -0.80 5.20 16 40 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 46 H 0.37 19.69 7.80 -92.70 -0.72 18.97 16 47 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 48 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.13 2.21 8.06 -2.91 -0.02 2.18 16 51 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -71.63 412.48 2.37 -69.26 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: -0.62 Total: 35.28 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 4.62 Total: -20.28 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -3.62 Total: -113.60 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.05 Total: -19.04 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -71.63 2.37 -69.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981356554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.589 kcal (2) G-P(sol) polarization free energy of solvation -71.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds