Wall clock time and date at job start Tue Mar 31 2020 16:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47219 * 2 1 4 4 C 1.38241 * 119.99978 * 89.99652 * 3 2 1 5 5 C 1.38235 * 120.00085 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99678 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.99801 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47203 * 90.00020 * 7 6 5 9 9 O 1.21284 * 119.99944 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00116 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00235 * 179.97438 * 10 8 7 12 12 H 1.09010 * 109.47016 * 325.00441 * 11 10 8 13 13 C 1.52998 * 109.46810 * 84.99967 * 11 10 8 14 14 C 1.53002 * 109.46851 * 60.00576 * 13 11 10 15 15 C 1.52996 * 109.47258 * 59.99809 * 14 13 11 16 16 C 1.52995 * 109.46992 * 299.99882 * 15 14 13 17 17 H 1.09005 * 109.47189 * 299.99933 * 16 15 14 18 18 N 1.46506 * 109.47182 * 180.02562 * 16 15 14 19 19 C 1.36939 * 120.00073 * 84.72333 * 18 16 15 20 20 H 1.08004 * 119.99859 * 0.02562 * 19 18 16 21 21 C 1.38805 * 119.99849 * 180.02562 * 19 18 16 22 22 N 1.31625 * 120.00056 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00155 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46896 * 90.00225 * 23 21 19 25 25 H 1.48501 * 109.47275 * 210.00265 * 23 21 19 26 26 H 1.48499 * 109.47039 * 330.00065 * 23 21 19 27 27 C 1.52996 * 109.47524 * 205.00296 * 11 10 8 28 28 C 1.38239 * 120.00248 * 0.26988 * 6 5 4 29 29 C 1.38234 * 119.99990 * 359.52437 * 28 6 5 30 30 H 1.09004 * 109.46836 * 60.00376 * 1 2 3 31 31 H 1.09004 * 109.47065 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47455 * 300.00441 * 1 2 3 33 33 H 1.08997 * 109.47762 * 239.99857 * 2 1 3 34 34 H 1.09004 * 109.46836 * 119.99624 * 2 1 3 35 35 H 1.07997 * 119.99977 * 359.97438 * 4 3 2 36 36 H 1.07997 * 120.00059 * 180.02562 * 5 4 3 37 37 H 1.08994 * 109.47149 * 330.00060 * 7 6 5 38 38 H 1.08999 * 109.46838 * 209.99874 * 7 6 5 39 39 H 0.97003 * 120.00243 * 0.02562 * 10 8 7 40 40 H 1.09008 * 109.46760 * 179.97438 * 13 11 10 41 41 H 1.08992 * 109.47402 * 300.00132 * 13 11 10 42 42 H 1.09008 * 109.46808 * 180.02562 * 14 13 11 43 43 H 1.09001 * 109.46587 * 299.99295 * 14 13 11 44 44 H 1.09007 * 109.46595 * 179.97438 * 15 14 13 45 45 H 1.08997 * 109.47248 * 60.00195 * 15 14 13 46 46 H 0.97005 * 119.99811 * 265.00126 * 18 16 15 47 47 H 0.97000 * 119.99835 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.47248 * 180.02562 * 27 11 10 49 49 H 1.09005 * 109.46905 * 59.99973 * 27 11 10 50 50 H 1.08004 * 119.99750 * 179.72413 * 28 6 5 51 51 H 1.07993 * 120.00578 * 180.26939 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0725 1.1972 5 6 2.7240 3.3756 1.1972 6 6 2.9554 4.0268 0.0001 7 6 3.4589 5.4473 0.0000 8 6 4.9659 5.4461 0.0008 9 8 5.5715 4.3953 0.0017 10 7 5.6407 6.6127 0.0004 11 6 7.1057 6.6116 0.0016 12 1 7.4679 5.7699 0.5921 13 6 7.6168 6.4843 -1.4349 14 6 7.1084 7.6657 -2.2636 15 6 7.6190 8.9731 -1.6546 16 6 7.1079 9.1004 -0.2181 17 1 6.0178 9.1013 -0.2190 18 7 7.5962 10.3526 0.3649 19 6 6.9123 11.5196 0.1517 20 1 6.0127 11.5169 -0.4458 21 6 7.3754 12.7061 0.7037 22 7 6.7183 13.8280 0.4984 23 14 8.9310 12.7106 1.7378 24 1 10.1066 12.9487 0.8623 25 1 8.8456 13.7884 2.7558 26 1 9.0775 11.3984 2.4174 27 6 7.6163 7.9190 0.6106 28 6 2.7203 3.3769 -1.1971 29 6 2.2630 2.0723 -1.1972 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 2.0822 1.5636 2.1325 36 1 2.9043 3.8846 2.1325 37 1 3.0956 5.9616 0.8897 38 1 3.0964 5.9612 -0.8902 39 1 5.1564 7.4532 0.0000 40 1 8.7069 6.4839 -1.4339 41 1 7.2531 5.5529 -1.8687 42 1 7.4722 7.5748 -3.2871 43 1 6.0184 7.6665 -2.2645 44 1 7.2571 9.8147 -2.2453 45 1 8.7089 8.9723 -1.6537 46 1 8.4063 10.3556 0.8985 47 1 7.0417 14.6570 0.8844 48 1 8.7062 7.9183 0.6111 49 1 7.2521 8.0097 1.6340 50 1 2.8969 3.8873 -2.1324 51 1 2.0834 1.5630 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981356556.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:19 Heat of formation + Delta-G solvation = -27.620323 kcal Electronic energy + Delta-G solvation = -27862.670910 eV Core-core repulsion = 24146.734526 eV Total energy + Delta-G solvation = -3715.936384 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.36518 -39.44520 -37.95185 -34.89647 -34.53811 -33.09294 -31.58827 -31.34400 -31.05416 -29.71600 -28.39832 -27.19896 -23.75449 -23.42480 -22.88385 -22.21447 -21.34707 -20.93410 -20.40501 -18.96890 -17.65813 -17.16474 -16.43838 -16.05332 -15.63525 -15.37741 -15.06200 -14.85285 -14.57267 -14.06001 -14.00040 -13.81908 -13.80553 -13.66600 -13.45064 -13.05868 -12.84433 -12.72702 -12.38665 -12.35199 -12.05032 -11.90469 -11.89264 -11.80873 -11.44758 -11.28799 -11.04741 -11.02417 -11.00505 -10.92638 -10.45108 -10.28413 -10.11052 -9.82887 -9.73243 -9.61433 -9.02115 -8.98469 -8.87190 -8.64649 -7.31588 -5.81416 -3.17221 1.17344 1.30829 2.69689 3.21799 3.34262 3.37346 3.42660 3.70985 4.44633 4.55168 4.57209 4.62567 4.79624 4.81811 4.86716 5.00788 5.02770 5.05425 5.08450 5.14508 5.23974 5.30264 5.38197 5.42169 5.45649 5.46776 5.57452 5.58305 5.59862 5.66209 5.75516 5.82382 5.86145 5.93717 5.94454 5.95186 6.00992 6.13113 6.21538 6.27430 6.37927 6.40009 6.46300 6.47494 6.61114 6.62923 6.82509 6.87923 6.96600 7.59922 7.93944 8.30006 8.37577 9.15891 9.88726 10.08246 11.36733 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023476 B = 0.002134 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.413482 B =13115.759293 C =13489.406484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.065 4.065 7 C -0.107 4.107 8 C 0.515 3.485 9 O -0.538 6.538 10 N -0.720 5.720 11 C 0.153 3.847 12 H 0.083 0.917 13 C -0.128 4.128 14 C -0.115 4.115 15 C -0.137 4.137 16 C 0.185 3.815 17 H 0.050 0.950 18 N -0.749 5.749 19 C -0.244 4.244 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.933 5.933 23 Si 0.884 3.116 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.277 1.277 27 C -0.137 4.137 28 C -0.102 4.102 29 C -0.117 4.117 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.404 0.596 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.361 0.639 47 H 0.259 0.741 48 H 0.074 0.926 49 H 0.069 0.931 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.319 -25.103 -2.051 26.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.065 4.065 7 C -0.146 4.146 8 C 0.301 3.699 9 O -0.415 6.415 10 N -0.373 5.373 11 C 0.048 3.952 12 H 0.101 0.899 13 C -0.166 4.166 14 C -0.153 4.153 15 C -0.177 4.177 16 C 0.076 3.924 17 H 0.068 0.932 18 N -0.391 5.391 19 C -0.374 4.374 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.581 5.581 23 Si 0.715 3.285 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.176 4.176 28 C -0.120 4.120 29 C -0.135 4.135 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.240 0.760 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.194 0.806 47 H 0.069 0.931 48 H 0.093 0.907 49 H 0.088 0.912 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.050 -25.652 -2.096 27.282 hybrid contribution 1.013 0.751 0.687 1.436 sum -8.037 -24.900 -1.409 26.203 Atomic orbital electron populations 1.21748 0.94785 1.01580 1.02238 1.20534 0.96099 0.92834 1.02759 1.19861 0.99389 0.96097 0.93275 1.20941 1.00392 0.94788 0.97429 1.20963 0.98767 0.94872 0.97417 1.19263 0.98974 0.94717 0.93543 1.20714 0.92876 0.95560 1.05494 1.20472 0.89533 0.83897 0.76048 1.90705 1.70286 1.31237 1.49294 1.46226 1.07532 1.08633 1.74902 1.20893 0.79275 0.98425 0.96600 0.89889 1.21901 1.00739 0.98658 0.95323 1.21494 1.00506 0.94956 0.98333 1.22247 1.00615 0.96044 0.98819 1.20123 0.96805 0.84925 0.90591 0.93170 1.42792 1.30185 1.04259 1.61850 1.19047 1.06858 0.84191 1.27255 0.89231 1.24676 0.98546 0.95405 1.00504 1.69702 1.40654 0.98402 1.49325 0.86555 0.84412 0.76971 0.80593 1.21139 1.21789 1.20325 1.22164 1.01543 0.93813 1.00069 1.20959 0.98805 0.94856 0.97390 1.20937 1.00419 0.94769 0.97422 0.92561 0.92512 0.92552 0.91143 0.91146 0.86309 0.86248 0.87868 0.87886 0.76012 0.91303 0.92019 0.92740 0.92439 0.91575 0.92689 0.80650 0.93058 0.90730 0.91182 0.86256 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.15 0.37 -0.53 16 2 C -0.08 -0.61 6.06 -27.89 -0.17 -0.77 16 3 C -0.09 -0.82 5.13 -104.62 -0.54 -1.35 16 4 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 5 C -0.10 -1.09 9.70 -39.58 -0.38 -1.47 16 6 C -0.06 -0.71 4.37 -104.62 -0.46 -1.16 16 7 C -0.11 -1.03 5.83 -29.03 -0.17 -1.20 16 8 C 0.51 6.51 7.79 -10.99 -0.09 6.42 16 9 O -0.54 -8.75 15.70 5.55 0.09 -8.67 16 10 N -0.72 -8.69 4.23 -53.80 -0.23 -8.92 16 11 C 0.15 2.00 2.78 -67.93 -0.19 1.81 16 12 H 0.08 1.15 7.58 -51.92 -0.39 0.76 16 13 C -0.13 -1.63 5.60 -26.73 -0.15 -1.78 16 14 C -0.11 -1.52 5.77 -26.73 -0.15 -1.67 16 15 C -0.14 -2.22 5.50 -26.74 -0.15 -2.37 16 16 C 0.19 3.21 2.60 -67.93 -0.18 3.04 16 17 H 0.05 0.87 6.45 -51.93 -0.33 0.54 16 18 N -0.75 -16.68 4.93 -53.42 -0.26 -16.95 16 19 C -0.24 -6.56 10.41 -15.06 -0.16 -6.72 16 20 H 0.09 2.58 8.06 -52.48 -0.42 2.15 16 21 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 22 N -0.93 -28.65 13.97 55.49 0.78 -27.87 16 23 Si 0.88 21.65 27.73 -169.99 -4.71 16.94 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.36 6.52 56.52 0.37 -6.00 16 27 C -0.14 -1.98 5.08 -26.73 -0.14 -2.12 16 28 C -0.10 -1.08 9.70 -39.58 -0.38 -1.46 16 29 C -0.12 -1.15 9.70 -39.58 -0.38 -1.54 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 34 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.10 0.82 8.08 -51.93 -0.42 0.40 16 38 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 39 H 0.40 4.54 6.87 -40.82 -0.28 4.26 16 40 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 43 H 0.06 0.74 7.60 -51.93 -0.39 0.35 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.36 8.01 5.66 -40.82 -0.23 7.78 16 47 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 48 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 51 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 404.94 15.07 6.10 6.10 Total: -1.00 -32.63 404.94 -10.86 -43.49 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -8.82 Total: 10.28 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -3.79 Total: -14.40 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.28 Total: -53.74 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.63 -10.86 -43.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981356556.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.866 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds