Wall clock time and date at job start Tue Mar 31 2020 16:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47219 * 2 1 4 4 C 1.38241 * 119.99978 * 89.99652 * 3 2 1 5 5 C 1.38235 * 120.00085 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99678 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.99801 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47203 * 90.00020 * 7 6 5 9 9 O 1.21284 * 119.99944 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00116 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00235 * 179.97438 * 10 8 7 12 12 H 1.09010 * 109.47016 * 325.00441 * 11 10 8 13 13 C 1.52998 * 109.46810 * 84.99967 * 11 10 8 14 14 C 1.53002 * 109.46851 * 60.00576 * 13 11 10 15 15 C 1.52996 * 109.47258 * 59.99809 * 14 13 11 16 16 C 1.52995 * 109.46992 * 299.99882 * 15 14 13 17 17 H 1.09005 * 109.47189 * 299.99933 * 16 15 14 18 18 N 1.46506 * 109.47182 * 180.02562 * 16 15 14 19 19 C 1.36939 * 120.00073 * 84.72333 * 18 16 15 20 20 H 1.08004 * 119.99859 * 0.02562 * 19 18 16 21 21 C 1.38805 * 119.99849 * 180.02562 * 19 18 16 22 22 N 1.31625 * 120.00056 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00155 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46896 * 90.00225 * 23 21 19 25 25 H 1.48501 * 109.47275 * 210.00265 * 23 21 19 26 26 H 1.48499 * 109.47039 * 330.00065 * 23 21 19 27 27 C 1.52996 * 109.47524 * 205.00296 * 11 10 8 28 28 C 1.38239 * 120.00248 * 0.26988 * 6 5 4 29 29 C 1.38234 * 119.99990 * 359.52437 * 28 6 5 30 30 H 1.09004 * 109.46836 * 60.00376 * 1 2 3 31 31 H 1.09004 * 109.47065 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47455 * 300.00441 * 1 2 3 33 33 H 1.08997 * 109.47762 * 239.99857 * 2 1 3 34 34 H 1.09004 * 109.46836 * 119.99624 * 2 1 3 35 35 H 1.07997 * 119.99977 * 359.97438 * 4 3 2 36 36 H 1.07997 * 120.00059 * 180.02562 * 5 4 3 37 37 H 1.08994 * 109.47149 * 330.00060 * 7 6 5 38 38 H 1.08999 * 109.46838 * 209.99874 * 7 6 5 39 39 H 0.97003 * 120.00243 * 0.02562 * 10 8 7 40 40 H 1.09008 * 109.46760 * 179.97438 * 13 11 10 41 41 H 1.08992 * 109.47402 * 300.00132 * 13 11 10 42 42 H 1.09008 * 109.46808 * 180.02562 * 14 13 11 43 43 H 1.09001 * 109.46587 * 299.99295 * 14 13 11 44 44 H 1.09007 * 109.46595 * 179.97438 * 15 14 13 45 45 H 1.08997 * 109.47248 * 60.00195 * 15 14 13 46 46 H 0.97005 * 119.99811 * 265.00126 * 18 16 15 47 47 H 0.97000 * 119.99835 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.47248 * 180.02562 * 27 11 10 49 49 H 1.09005 * 109.46905 * 59.99973 * 27 11 10 50 50 H 1.08004 * 119.99750 * 179.72413 * 28 6 5 51 51 H 1.07993 * 120.00578 * 180.26939 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0725 1.1972 5 6 2.7240 3.3756 1.1972 6 6 2.9554 4.0268 0.0001 7 6 3.4589 5.4473 0.0000 8 6 4.9659 5.4461 0.0008 9 8 5.5715 4.3953 0.0017 10 7 5.6407 6.6127 0.0004 11 6 7.1057 6.6116 0.0016 12 1 7.4679 5.7699 0.5921 13 6 7.6168 6.4843 -1.4349 14 6 7.1084 7.6657 -2.2636 15 6 7.6190 8.9731 -1.6546 16 6 7.1079 9.1004 -0.2181 17 1 6.0178 9.1013 -0.2190 18 7 7.5962 10.3526 0.3649 19 6 6.9123 11.5196 0.1517 20 1 6.0127 11.5169 -0.4458 21 6 7.3754 12.7061 0.7037 22 7 6.7183 13.8280 0.4984 23 14 8.9310 12.7106 1.7378 24 1 10.1066 12.9487 0.8623 25 1 8.8456 13.7884 2.7558 26 1 9.0775 11.3984 2.4174 27 6 7.6163 7.9190 0.6106 28 6 2.7203 3.3769 -1.1971 29 6 2.2630 2.0723 -1.1972 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 2.0822 1.5636 2.1325 36 1 2.9043 3.8846 2.1325 37 1 3.0956 5.9616 0.8897 38 1 3.0964 5.9612 -0.8902 39 1 5.1564 7.4532 0.0000 40 1 8.7069 6.4839 -1.4339 41 1 7.2531 5.5529 -1.8687 42 1 7.4722 7.5748 -3.2871 43 1 6.0184 7.6665 -2.2645 44 1 7.2571 9.8147 -2.2453 45 1 8.7089 8.9723 -1.6537 46 1 8.4063 10.3556 0.8985 47 1 7.0417 14.6570 0.8844 48 1 8.7062 7.9183 0.6111 49 1 7.2521 8.0097 1.6340 50 1 2.8969 3.8873 -2.1324 51 1 2.0834 1.5630 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981356556.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:18 Heat of formation + Delta-G solvation = -45.462061 kcal Electronic energy + Delta-G solvation = -27863.444586 eV Core-core repulsion = 24146.734526 eV Total energy + Delta-G solvation = -3716.710060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.35860 -40.30007 -39.11106 -36.25755 -35.46793 -34.40878 -33.24253 -32.28144 -31.78357 -30.85510 -29.88351 -27.95824 -25.38314 -24.33105 -23.61779 -23.35279 -22.51238 -22.12643 -21.21770 -20.29564 -19.46806 -18.18539 -17.26216 -16.89620 -16.71219 -16.53798 -16.33636 -15.87146 -15.82445 -15.37217 -15.03582 -14.85823 -14.66426 -14.58840 -14.52528 -14.25033 -14.14416 -13.74446 -13.69724 -13.21704 -13.08639 -12.99737 -12.89572 -12.83712 -12.79559 -12.51901 -12.38861 -12.04675 -11.95911 -11.80676 -11.68834 -11.63714 -11.62244 -11.51600 -11.02725 -10.88774 -10.85130 -9.97326 -9.76999 -9.38688 -9.27348 -7.99265 -5.31842 0.42560 0.55497 1.39804 1.42169 1.49536 1.71999 2.28767 2.50779 2.92809 3.32503 3.47168 3.72343 3.85090 3.90517 3.93499 3.96371 4.07220 4.17022 4.21805 4.23417 4.29086 4.34676 4.48732 4.52361 4.53741 4.60763 4.64055 4.66900 4.70817 4.75469 4.79136 4.80997 4.95421 5.06716 5.09278 5.09976 5.17304 5.20292 5.21539 5.25211 5.37759 5.39442 5.50491 5.53417 5.54434 5.66789 5.71266 5.76007 5.81724 6.16219 6.24925 6.62031 7.11537 7.31982 7.88502 8.06272 9.22024 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023476 B = 0.002134 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.413482 B =13115.759293 C =13489.406484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.129 4.129 5 C -0.118 4.118 6 C -0.081 4.081 7 C -0.102 4.102 8 C 0.517 3.483 9 O -0.575 6.575 10 N -0.716 5.716 11 C 0.159 3.841 12 H 0.080 0.920 13 C -0.121 4.121 14 C -0.105 4.105 15 C -0.129 4.129 16 C 0.179 3.821 17 H 0.049 0.951 18 N -0.752 5.752 19 C -0.222 4.222 20 H 0.060 0.940 21 C -0.066 4.066 22 N -0.984 5.984 23 Si 0.951 3.049 24 H -0.283 1.283 25 H -0.300 1.300 26 H -0.250 1.250 27 C -0.125 4.125 28 C -0.117 4.117 29 C -0.128 4.128 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.409 0.591 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.038 0.962 45 H 0.055 0.945 46 H 0.364 0.636 47 H 0.255 0.745 48 H 0.084 0.916 49 H 0.068 0.932 50 H 0.128 0.872 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.850 -27.298 -1.778 28.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.147 4.147 5 C -0.136 4.136 6 C -0.082 4.082 7 C -0.141 4.141 8 C 0.304 3.696 9 O -0.455 6.455 10 N -0.369 5.369 11 C 0.053 3.947 12 H 0.098 0.902 13 C -0.159 4.159 14 C -0.143 4.143 15 C -0.169 4.169 16 C 0.071 3.929 17 H 0.067 0.933 18 N -0.395 5.395 19 C -0.353 4.353 20 H 0.078 0.922 21 C -0.258 4.258 22 N -0.635 5.635 23 Si 0.779 3.221 24 H -0.209 1.209 25 H -0.227 1.227 26 H -0.174 1.174 27 C -0.163 4.163 28 C -0.135 4.135 29 C -0.146 4.146 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.151 0.849 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.246 0.754 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.197 0.803 47 H 0.064 0.936 48 H 0.102 0.898 49 H 0.087 0.913 50 H 0.145 0.855 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.584 -27.902 -1.834 29.250 hybrid contribution 0.787 1.356 0.531 1.655 sum -7.797 -26.546 -1.303 27.698 Atomic orbital electron populations 1.21724 0.94026 1.02382 1.01917 1.20579 0.96682 0.91475 1.03396 1.20182 0.98814 0.97193 0.93067 1.21214 1.00279 0.94796 0.98368 1.21196 0.99169 0.95465 0.97788 1.19459 0.99522 0.95398 0.93803 1.20745 0.90561 0.95527 1.07272 1.20916 0.90612 0.83185 0.74856 1.90688 1.71255 1.32471 1.51083 1.46204 1.07234 1.08881 1.74543 1.20783 0.79859 0.97290 0.96724 0.90167 1.21843 1.01376 0.98010 0.94696 1.21399 1.00703 0.93338 0.98844 1.22092 1.00565 0.96728 0.97546 1.20367 0.96888 0.84064 0.91556 0.93289 1.42827 1.29998 1.04434 1.62211 1.19014 1.05543 0.85789 1.24917 0.92202 1.25461 1.02309 0.95127 1.02865 1.69881 1.42995 0.99109 1.51560 0.85460 0.80109 0.77793 0.78700 1.20929 1.22746 1.17438 1.22022 1.02092 0.92851 0.99367 1.21197 0.99104 0.95420 0.97762 1.21217 1.00253 0.94786 0.98350 0.92862 0.91150 0.92896 0.90485 0.90539 0.84870 0.85593 0.86112 0.85968 0.75436 0.90270 0.92246 0.91531 0.92064 0.94314 0.92589 0.80296 0.93574 0.89768 0.91298 0.85451 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.89 71.98 0.71 -0.83 16 2 C -0.08 -1.07 6.06 29.85 0.18 -0.89 16 3 C -0.09 -1.66 5.13 -19.86 -0.10 -1.76 16 4 C -0.13 -2.43 9.70 22.27 0.22 -2.21 16 5 C -0.12 -2.43 9.70 22.27 0.22 -2.21 16 6 C -0.08 -1.70 4.37 -19.86 -0.09 -1.79 16 7 C -0.10 -1.81 5.83 29.10 0.17 -1.64 16 8 C 0.52 12.30 7.79 87.66 0.68 12.99 16 9 O -0.58 -18.11 15.70 -3.04 -0.05 -18.16 16 10 N -0.72 -16.00 4.23 -442.53 -1.87 -17.87 16 11 C 0.16 3.80 2.78 44.99 0.13 3.93 16 12 H 0.08 2.06 7.58 -2.38 -0.02 2.04 16 13 C -0.12 -2.78 5.60 30.59 0.17 -2.61 16 14 C -0.10 -2.55 5.77 30.59 0.18 -2.38 16 15 C -0.13 -4.02 5.50 30.59 0.17 -3.85 16 16 C 0.18 5.96 2.60 44.99 0.12 6.07 16 17 H 0.05 1.65 6.45 -2.38 -0.02 1.64 16 18 N -0.75 -32.60 4.93 -322.93 -1.59 -34.19 16 19 C -0.22 -12.00 10.41 84.03 0.87 -11.13 16 20 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 21 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 22 N -0.98 -61.96 13.97 21.65 0.30 -61.66 16 23 Si 0.95 44.53 27.73 68.60 1.90 46.43 16 24 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 25 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 26 H -0.25 -10.43 6.52 99.48 0.65 -9.78 16 27 C -0.12 -3.32 5.08 30.59 0.16 -3.16 16 28 C -0.12 -2.37 9.70 22.27 0.22 -2.15 16 29 C -0.13 -2.39 9.70 22.27 0.22 -2.17 16 30 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 0.87 8.09 -2.39 -0.02 0.86 16 34 H 0.08 0.88 8.09 -2.38 -0.02 0.86 16 35 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.13 2.28 8.06 -2.91 -0.02 2.25 16 37 H 0.12 1.70 8.08 -2.39 -0.02 1.68 16 38 H 0.12 1.68 8.08 -2.39 -0.02 1.66 16 39 H 0.41 8.45 6.87 -92.71 -0.64 7.81 16 40 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.06 1.46 7.60 -2.39 -0.02 1.44 16 44 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.36 15.31 5.66 -92.70 -0.53 14.79 16 47 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 48 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 50 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 51 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -70.86 404.94 3.06 -67.80 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: -0.31 Total: 36.78 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 4.68 Total: -19.13 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -3.16 Total: -113.72 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.05 Total: -18.16 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.90 Total: 46.43 kcal Total: -70.86 3.06 -67.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981356556.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.338 kcal (2) G-P(sol) polarization free energy of solvation -70.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds