Wall clock time and date at job start Tue Mar 31 2020 16:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47007 * 2 1 4 4 C 1.38240 * 120.00190 * 89.99959 * 3 2 1 5 5 C 1.38234 * 120.00218 * 180.02562 * 4 3 2 6 6 C 1.38241 * 119.99568 * 359.96021 * 5 4 3 7 7 C 1.50701 * 119.99576 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47064 * 90.00122 * 7 6 5 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47199 * 324.99664 * 11 10 8 13 13 C 1.52996 * 109.47084 * 84.99619 * 11 10 8 14 14 C 1.53002 * 109.47141 * 180.02562 * 13 11 10 15 15 C 1.53009 * 109.47090 * 300.00105 * 14 13 11 16 16 C 1.52998 * 109.46882 * 59.99780 * 15 14 13 17 17 H 1.08997 * 109.47585 * 60.00535 * 16 15 14 18 18 N 1.46500 * 109.47122 * 180.02562 * 16 15 14 19 19 C 1.36939 * 120.00118 * 275.00664 * 18 16 15 20 20 H 1.08005 * 119.99726 * 359.97438 * 19 18 16 21 21 C 1.38813 * 120.00179 * 180.02562 * 19 18 16 22 22 N 1.31618 * 119.99704 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99785 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47317 * 89.99542 * 23 21 19 25 25 H 1.48505 * 109.46585 * 209.99450 * 23 21 19 26 26 H 1.48495 * 109.47115 * 329.99241 * 23 21 19 27 27 C 1.53002 * 109.47076 * 204.99915 * 11 10 8 28 28 C 1.38233 * 120.00269 * 0.27212 * 6 5 4 29 29 C 1.38234 * 119.99979 * 359.54072 * 28 6 5 30 30 H 1.08995 * 109.47101 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46656 * 300.00118 * 1 2 3 32 32 H 1.08992 * 109.47253 * 59.99917 * 1 2 3 33 33 H 1.08996 * 109.46813 * 239.99597 * 2 1 3 34 34 H 1.09002 * 109.46988 * 119.99593 * 2 1 3 35 35 H 1.08000 * 119.99654 * 0.02562 * 4 3 2 36 36 H 1.07995 * 119.99943 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.47060 * 210.00086 * 7 6 5 38 38 H 1.09001 * 109.47380 * 330.00174 * 7 6 5 39 39 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 40 40 H 1.09002 * 109.47281 * 299.99855 * 13 11 10 41 41 H 1.08999 * 109.47646 * 60.00441 * 13 11 10 42 42 H 1.09001 * 109.47355 * 59.99915 * 14 13 11 43 43 H 1.09004 * 109.47634 * 180.02562 * 14 13 11 44 44 H 1.08992 * 109.46996 * 179.97438 * 15 14 13 45 45 H 1.09001 * 109.46866 * 300.00109 * 15 14 13 46 46 H 0.97001 * 120.00366 * 94.99650 * 18 16 15 47 47 H 0.97007 * 119.99466 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.46609 * 299.99518 * 27 11 10 49 49 H 1.09002 * 109.47469 * 59.99768 * 27 11 10 50 50 H 1.08003 * 119.99927 * 179.72604 * 28 6 5 51 51 H 1.07995 * 120.00261 * 180.20628 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7230 3.3760 1.1972 6 6 2.9536 4.0275 -0.0001 7 6 3.4548 5.4487 -0.0001 8 6 4.9619 5.4499 0.0009 9 8 5.5691 4.4001 0.0020 10 7 5.6349 6.6176 0.0016 11 6 7.0998 6.6188 0.0020 12 1 7.4637 5.7770 0.5912 13 6 7.6103 6.4940 -1.4349 14 6 9.1403 6.4946 -1.4345 15 6 9.6496 7.8019 -0.8240 16 6 9.1391 7.9266 0.6129 17 1 9.5026 7.0847 1.2021 18 7 9.6263 9.1785 1.1973 19 6 10.8677 9.2279 1.7732 20 1 11.4875 8.3437 1.7970 21 6 11.3291 10.4140 2.3274 22 7 10.5735 11.4914 2.2989 23 14 13.0222 10.4810 3.1137 24 1 14.0292 10.8576 2.0892 25 1 13.0225 11.4907 4.2027 26 1 13.3608 9.1483 3.6742 27 6 7.6086 7.9263 0.6123 28 6 2.7187 3.3774 -1.1972 29 6 2.2621 2.0727 -1.1972 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.0831 1.5632 2.1325 36 1 2.9026 3.8852 2.1324 37 1 3.0917 5.9620 -0.8904 38 1 3.0906 5.9625 0.8896 39 1 5.1491 7.4573 0.0011 40 1 7.2478 5.5625 -1.8697 41 1 7.2465 7.3358 -2.0242 42 1 9.5038 5.6526 -0.8454 43 1 9.5041 6.4062 -2.4582 44 1 10.7396 7.8021 -0.8233 45 1 9.2861 8.6439 -1.4131 46 1 9.0696 9.9726 1.1762 47 1 10.8961 12.3203 2.6859 48 1 7.2448 8.7680 0.0230 49 1 7.2449 8.0152 1.6360 50 1 2.8947 3.8880 -2.1325 51 1 2.0817 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981356557.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:22 Heat of formation + Delta-G solvation = -34.320494 kcal Electronic energy + Delta-G solvation = -27380.386011 eV Core-core repulsion = 23664.159085 eV Total energy + Delta-G solvation = -3716.226925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.29797 -39.34140 -37.88230 -34.94035 -34.56573 -33.32939 -31.61697 -31.11161 -31.08800 -29.41640 -27.89371 -27.09013 -23.84680 -23.56625 -22.92049 -22.06010 -21.49212 -20.67555 -20.24609 -19.35995 -17.35492 -16.76970 -16.62926 -16.07364 -15.96783 -15.29559 -14.97364 -14.60888 -14.39129 -14.03651 -14.00593 -13.82380 -13.74506 -13.57199 -13.45566 -13.16356 -13.08182 -12.75769 -12.36298 -12.26711 -12.08385 -11.96305 -11.93405 -11.47836 -11.08508 -11.03631 -10.99711 -10.92383 -10.87040 -10.71977 -10.34167 -10.26809 -10.17146 -10.04261 -9.69826 -9.57106 -9.05280 -8.95192 -8.85459 -8.67938 -6.96217 -5.77144 -3.05588 1.13554 1.27499 2.65512 3.15560 3.43614 3.49138 3.50450 3.66745 4.40104 4.53927 4.58054 4.58436 4.77344 4.83228 4.84415 5.02421 5.03161 5.07253 5.13591 5.21458 5.22512 5.32845 5.34608 5.42099 5.51112 5.56064 5.61710 5.63425 5.70010 5.75714 5.80111 5.88361 5.90984 5.91490 5.98296 6.04051 6.15099 6.23950 6.31637 6.35394 6.42373 6.44035 6.52826 6.55647 6.65200 6.73758 6.84514 6.97300 7.12842 7.54613 7.70915 8.26391 8.41682 9.52902 10.10229 10.45079 11.45580 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026163 B = 0.001867 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.967197 B =14991.972450 C =15271.382956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.067 4.067 7 C -0.104 4.104 8 C 0.512 3.488 9 O -0.532 6.532 10 N -0.726 5.726 11 C 0.149 3.851 12 H 0.086 0.914 13 C -0.123 4.123 14 C -0.115 4.115 15 C -0.136 4.136 16 C 0.183 3.817 17 H 0.048 0.952 18 N -0.724 5.724 19 C -0.237 4.237 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.129 4.129 28 C -0.102 4.102 29 C -0.117 4.117 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.399 0.601 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.064 0.936 49 H 0.068 0.932 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.916 -17.478 -7.617 29.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.067 4.067 7 C -0.144 4.144 8 C 0.298 3.702 9 O -0.408 6.408 10 N -0.377 5.377 11 C 0.045 3.955 12 H 0.104 0.896 13 C -0.162 4.162 14 C -0.154 4.154 15 C -0.177 4.177 16 C 0.072 3.928 17 H 0.066 0.934 18 N -0.365 5.365 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.168 4.168 28 C -0.120 4.120 29 C -0.135 4.135 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.233 0.767 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.298 -18.262 -7.503 29.041 hybrid contribution 0.631 0.955 0.365 1.201 sum -20.667 -17.307 -7.138 27.886 Atomic orbital electron populations 1.21746 0.94785 1.01605 1.02186 1.20541 0.96085 0.92813 1.02840 1.19870 0.99279 0.96102 0.93264 1.20953 1.00298 0.94764 0.97475 1.20967 0.98683 0.94907 0.97406 1.19253 0.99164 0.94744 0.93584 1.20704 0.92891 0.95626 1.05217 1.20489 0.89501 0.83971 0.76233 1.90728 1.70131 1.31263 1.48724 1.46190 1.07794 1.08309 1.75359 1.21009 0.78118 0.99600 0.96811 0.89578 1.21870 0.96577 1.01424 0.96298 1.21490 0.94259 0.99162 1.00446 1.22287 1.01190 0.95485 0.98713 1.20112 0.89649 0.90881 0.92109 0.93393 1.42399 1.17959 1.07538 1.68555 1.19256 0.92682 0.95694 1.29207 0.91149 1.24731 0.98489 0.95901 1.01869 1.69662 1.36887 1.00684 1.51002 0.86203 0.84194 0.77129 0.78765 1.21749 1.21811 1.20764 1.22094 0.98348 0.95461 1.00857 1.20941 0.98881 0.94896 0.97319 1.20939 1.00416 0.94746 0.97444 0.92486 0.92572 0.92590 0.91105 0.91083 0.86244 0.86218 0.88062 0.87976 0.76749 0.92279 0.92126 0.92212 0.92555 0.91918 0.92676 0.78349 0.93571 0.91737 0.91364 0.86314 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.90 37.16 0.37 -0.49 16 2 C -0.09 -0.60 6.06 -27.88 -0.17 -0.76 16 3 C -0.09 -0.79 5.13 -104.62 -0.54 -1.33 16 4 C -0.12 -1.13 9.70 -39.58 -0.38 -1.51 16 5 C -0.10 -1.05 9.70 -39.58 -0.38 -1.43 16 6 C -0.07 -0.70 4.37 -104.62 -0.46 -1.15 16 7 C -0.10 -0.91 5.83 -29.03 -0.17 -1.08 16 8 C 0.51 6.32 7.79 -10.98 -0.09 6.23 16 9 O -0.53 -8.87 15.70 5.56 0.09 -8.78 16 10 N -0.73 -8.26 5.08 -53.81 -0.27 -8.53 16 11 C 0.15 2.09 2.45 -67.93 -0.17 1.92 16 12 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 13 C -0.12 -1.68 5.49 -26.73 -0.15 -1.82 16 14 C -0.11 -1.68 5.92 -26.73 -0.16 -1.84 16 15 C -0.14 -2.41 5.50 -26.73 -0.15 -2.56 16 16 C 0.18 3.56 2.77 -67.91 -0.19 3.37 16 17 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 18 N -0.72 -17.81 5.12 -53.40 -0.27 -18.09 16 19 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 20 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -27.96 13.06 55.49 0.72 -27.24 16 23 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C -0.13 -2.02 4.86 -26.70 -0.13 -2.15 16 28 C -0.10 -1.03 9.70 -39.58 -0.38 -1.41 16 29 C -0.12 -1.11 9.70 -39.58 -0.38 -1.50 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.10 0.65 8.08 -51.93 -0.42 0.23 16 38 H 0.10 0.69 8.09 -51.93 -0.42 0.27 16 39 H 0.40 3.46 8.60 -40.82 -0.35 3.11 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 47 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 50 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 51 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 412.48 15.07 6.22 6.22 Total: -1.00 -32.91 412.48 -11.36 -44.27 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -9.05 Total: 9.49 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -3.77 Total: -14.70 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.18 Total: -53.86 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.91 -11.36 -44.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981356557.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.949 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds