Wall clock time and date at job start Tue Mar 31 2020 16:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47007 * 2 1 4 4 C 1.38240 * 120.00190 * 89.99959 * 3 2 1 5 5 C 1.38234 * 120.00218 * 180.02562 * 4 3 2 6 6 C 1.38241 * 119.99568 * 359.96021 * 5 4 3 7 7 C 1.50701 * 119.99576 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47064 * 90.00122 * 7 6 5 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47199 * 324.99664 * 11 10 8 13 13 C 1.52996 * 109.47084 * 84.99619 * 11 10 8 14 14 C 1.53002 * 109.47141 * 180.02562 * 13 11 10 15 15 C 1.53009 * 109.47090 * 300.00105 * 14 13 11 16 16 C 1.52998 * 109.46882 * 59.99780 * 15 14 13 17 17 H 1.08997 * 109.47585 * 60.00535 * 16 15 14 18 18 N 1.46500 * 109.47122 * 180.02562 * 16 15 14 19 19 C 1.36939 * 120.00118 * 275.00664 * 18 16 15 20 20 H 1.08005 * 119.99726 * 359.97438 * 19 18 16 21 21 C 1.38813 * 120.00179 * 180.02562 * 19 18 16 22 22 N 1.31618 * 119.99704 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99785 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47317 * 89.99542 * 23 21 19 25 25 H 1.48505 * 109.46585 * 209.99450 * 23 21 19 26 26 H 1.48495 * 109.47115 * 329.99241 * 23 21 19 27 27 C 1.53002 * 109.47076 * 204.99915 * 11 10 8 28 28 C 1.38233 * 120.00269 * 0.27212 * 6 5 4 29 29 C 1.38234 * 119.99979 * 359.54072 * 28 6 5 30 30 H 1.08995 * 109.47101 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46656 * 300.00118 * 1 2 3 32 32 H 1.08992 * 109.47253 * 59.99917 * 1 2 3 33 33 H 1.08996 * 109.46813 * 239.99597 * 2 1 3 34 34 H 1.09002 * 109.46988 * 119.99593 * 2 1 3 35 35 H 1.08000 * 119.99654 * 0.02562 * 4 3 2 36 36 H 1.07995 * 119.99943 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.47060 * 210.00086 * 7 6 5 38 38 H 1.09001 * 109.47380 * 330.00174 * 7 6 5 39 39 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 40 40 H 1.09002 * 109.47281 * 299.99855 * 13 11 10 41 41 H 1.08999 * 109.47646 * 60.00441 * 13 11 10 42 42 H 1.09001 * 109.47355 * 59.99915 * 14 13 11 43 43 H 1.09004 * 109.47634 * 180.02562 * 14 13 11 44 44 H 1.08992 * 109.46996 * 179.97438 * 15 14 13 45 45 H 1.09001 * 109.46866 * 300.00109 * 15 14 13 46 46 H 0.97001 * 120.00366 * 94.99650 * 18 16 15 47 47 H 0.97007 * 119.99466 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.46609 * 299.99518 * 27 11 10 49 49 H 1.09002 * 109.47469 * 59.99768 * 27 11 10 50 50 H 1.08003 * 119.99927 * 179.72604 * 28 6 5 51 51 H 1.07995 * 120.00261 * 180.20628 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7230 3.3760 1.1972 6 6 2.9536 4.0275 -0.0001 7 6 3.4548 5.4487 -0.0001 8 6 4.9619 5.4499 0.0009 9 8 5.5691 4.4001 0.0020 10 7 5.6349 6.6176 0.0016 11 6 7.0998 6.6188 0.0020 12 1 7.4637 5.7770 0.5912 13 6 7.6103 6.4940 -1.4349 14 6 9.1403 6.4946 -1.4345 15 6 9.6496 7.8019 -0.8240 16 6 9.1391 7.9266 0.6129 17 1 9.5026 7.0847 1.2021 18 7 9.6263 9.1785 1.1973 19 6 10.8677 9.2279 1.7732 20 1 11.4875 8.3437 1.7970 21 6 11.3291 10.4140 2.3274 22 7 10.5735 11.4914 2.2989 23 14 13.0222 10.4810 3.1137 24 1 14.0292 10.8576 2.0892 25 1 13.0225 11.4907 4.2027 26 1 13.3608 9.1483 3.6742 27 6 7.6086 7.9263 0.6123 28 6 2.7187 3.3774 -1.1972 29 6 2.2621 2.0727 -1.1972 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.0831 1.5632 2.1325 36 1 2.9026 3.8852 2.1324 37 1 3.0917 5.9620 -0.8904 38 1 3.0906 5.9625 0.8896 39 1 5.1491 7.4573 0.0011 40 1 7.2478 5.5625 -1.8697 41 1 7.2465 7.3358 -2.0242 42 1 9.5038 5.6526 -0.8454 43 1 9.5041 6.4062 -2.4582 44 1 10.7396 7.8021 -0.8233 45 1 9.2861 8.6439 -1.4131 46 1 9.0696 9.9726 1.1762 47 1 10.8961 12.3203 2.6859 48 1 7.2448 8.7680 0.0230 49 1 7.2449 8.0152 1.6360 50 1 2.8947 3.8880 -2.1325 51 1 2.0817 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981356557.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:21 Heat of formation + Delta-G solvation = -52.670203 kcal Electronic energy + Delta-G solvation = -27381.181714 eV Core-core repulsion = 23664.159085 eV Total energy + Delta-G solvation = -3717.022628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.23819 -40.21234 -39.13712 -36.24406 -35.47120 -34.78851 -32.96421 -32.29192 -31.78293 -30.62703 -29.45273 -27.88411 -25.70877 -24.36132 -23.62088 -23.26669 -22.71809 -21.57069 -21.25228 -20.70583 -19.17965 -17.94639 -17.60708 -16.94731 -16.79503 -16.39672 -16.04488 -15.90220 -15.65931 -15.38986 -15.05993 -15.02152 -14.69731 -14.60163 -14.51317 -14.23673 -14.14859 -13.72657 -13.59284 -13.42974 -12.94975 -12.90651 -12.88707 -12.78042 -12.52472 -12.27213 -12.15436 -12.04896 -12.03743 -11.97369 -11.69493 -11.64389 -11.63767 -11.48064 -11.37397 -10.88191 -10.78863 -10.00345 -9.76954 -9.38873 -8.99787 -7.94203 -5.21831 0.42143 0.55514 1.47193 1.47995 1.56401 1.71178 2.22134 2.56627 2.92126 3.39102 3.64198 3.72243 3.86434 3.91536 3.94995 4.01628 4.09389 4.17080 4.22334 4.29682 4.31673 4.46352 4.49577 4.51990 4.54271 4.57778 4.60902 4.64079 4.68201 4.75238 4.76527 4.79663 5.02691 5.06474 5.09274 5.12879 5.17080 5.20768 5.22145 5.25152 5.35365 5.39038 5.49978 5.50947 5.54018 5.55700 5.66408 5.70658 5.76051 6.16348 6.28667 6.64612 7.34184 7.35106 8.10736 8.34834 9.29015 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026163 B = 0.001867 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.967197 B =14991.972450 C =15271.382956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.131 4.131 5 C -0.119 4.119 6 C -0.084 4.084 7 C -0.096 4.096 8 C 0.512 3.488 9 O -0.579 6.579 10 N -0.715 5.715 11 C 0.159 3.841 12 H 0.062 0.938 13 C -0.115 4.115 14 C -0.107 4.107 15 C -0.126 4.126 16 C 0.176 3.824 17 H 0.033 0.967 18 N -0.735 5.735 19 C -0.239 4.239 20 H 0.071 0.929 21 C -0.073 4.073 22 N -0.967 5.967 23 Si 0.968 3.032 24 H -0.288 1.288 25 H -0.295 1.295 26 H -0.273 1.273 27 C -0.114 4.114 28 C -0.115 4.115 29 C -0.129 4.129 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.415 0.585 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.040 0.960 45 H 0.055 0.945 46 H 0.374 0.626 47 H 0.250 0.750 48 H 0.077 0.923 49 H 0.060 0.940 50 H 0.131 0.869 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.129 -18.221 -8.560 30.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.148 4.148 5 C -0.137 4.137 6 C -0.084 4.084 7 C -0.135 4.135 8 C 0.300 3.700 9 O -0.459 6.459 10 N -0.367 5.367 11 C 0.054 3.946 12 H 0.081 0.919 13 C -0.153 4.153 14 C -0.146 4.146 15 C -0.166 4.166 16 C 0.067 3.933 17 H 0.051 0.949 18 N -0.375 5.375 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.798 3.202 24 H -0.215 1.215 25 H -0.221 1.221 26 H -0.198 1.198 27 C -0.152 4.152 28 C -0.133 4.133 29 C -0.147 4.147 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.252 0.748 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.206 0.794 47 H 0.059 0.941 48 H 0.095 0.905 49 H 0.079 0.921 50 H 0.149 0.851 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.539 -19.023 -8.465 30.685 hybrid contribution 0.979 1.100 0.644 1.607 sum -21.560 -17.923 -7.821 29.107 Atomic orbital electron populations 1.21717 0.93905 1.02376 1.01958 1.20584 0.96789 0.91542 1.03313 1.20181 0.98837 0.97146 0.93127 1.21213 1.00402 0.94894 0.98335 1.21209 0.99121 0.95456 0.97903 1.19500 0.99532 0.95719 0.93696 1.20733 0.89718 0.95354 1.07683 1.21113 0.90934 0.83127 0.74809 1.90713 1.71347 1.32914 1.50899 1.46017 1.06601 1.09193 1.74848 1.20685 0.79846 0.97407 0.96684 0.91929 1.21792 0.95541 1.02048 0.95932 1.21421 0.95111 0.96943 1.01121 1.22090 0.99746 0.97314 0.97447 1.20325 0.92218 0.88195 0.92553 0.94883 1.42559 1.17130 1.08868 1.68900 1.19586 0.93699 0.95562 1.28241 0.91102 1.25479 1.02028 0.95797 1.03272 1.69802 1.38504 1.01009 1.52476 0.85214 0.80160 0.77195 0.77661 1.21474 1.22145 1.19783 1.21875 0.95445 0.96968 1.00957 1.21212 0.98938 0.95349 0.97836 1.21229 1.00293 0.94896 0.98272 0.91211 0.92890 0.92720 0.90520 0.90726 0.85076 0.85654 0.85207 0.85716 0.74803 0.92242 0.90591 0.92674 0.90648 0.94119 0.92658 0.79382 0.94075 0.90464 0.92106 0.85141 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.90 71.98 0.71 -0.77 16 2 C -0.08 -1.08 6.06 29.85 0.18 -0.90 16 3 C -0.09 -1.64 5.13 -19.86 -0.10 -1.74 16 4 C -0.13 -2.45 9.70 22.27 0.22 -2.23 16 5 C -0.12 -2.38 9.70 22.27 0.22 -2.16 16 6 C -0.08 -1.64 4.37 -19.86 -0.09 -1.73 16 7 C -0.10 -1.43 5.83 29.10 0.17 -1.26 16 8 C 0.51 11.79 7.79 87.66 0.68 12.47 16 9 O -0.58 -18.99 15.70 -3.02 -0.05 -19.04 16 10 N -0.71 -14.81 5.08 -442.54 -2.25 -17.06 16 11 C 0.16 4.26 2.45 44.99 0.11 4.37 16 12 H 0.06 2.02 7.58 -2.39 -0.02 2.00 16 13 C -0.11 -2.89 5.49 30.59 0.17 -2.72 16 14 C -0.11 -2.98 5.92 30.60 0.18 -2.80 16 15 C -0.13 -4.38 5.50 30.60 0.17 -4.21 16 16 C 0.18 6.85 2.77 45.01 0.12 6.98 16 17 H 0.03 1.38 8.08 -2.39 -0.02 1.36 16 18 N -0.73 -36.54 5.12 -322.86 -1.65 -38.20 16 19 C -0.24 -13.29 9.93 84.03 0.83 -12.46 16 20 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 21 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 22 N -0.97 -58.63 13.06 21.65 0.28 -58.35 16 23 Si 0.97 46.35 29.55 68.60 2.03 48.37 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 26 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 27 C -0.11 -3.47 4.86 30.61 0.15 -3.32 16 28 C -0.12 -2.18 9.70 22.27 0.22 -1.96 16 29 C -0.13 -2.31 9.70 22.27 0.22 -2.09 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 34 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 35 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 37 H 0.13 1.21 8.08 -2.39 -0.02 1.19 16 38 H 0.12 1.31 8.09 -2.39 -0.02 1.29 16 39 H 0.42 6.00 8.60 -92.70 -0.80 5.20 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.37 19.70 7.80 -92.71 -0.72 18.97 16 47 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 48 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 51 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -71.63 412.48 2.37 -69.26 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: -0.62 Total: 35.29 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 4.62 Total: -20.29 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -3.62 Total: -113.61 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.05 Total: -19.04 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.37 kcal Total: -71.63 2.37 -69.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981356557.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.591 kcal (2) G-P(sol) polarization free energy of solvation -71.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds