Wall clock time and date at job start Tue Mar 31 2020 16:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47133 * 2 1 4 4 C 1.38235 * 120.00243 * 89.99888 * 3 2 1 5 5 C 1.38225 * 120.00176 * 180.02562 * 4 3 2 6 6 C 1.38229 * 120.00456 * 359.95399 * 5 4 3 7 7 C 1.50695 * 120.00752 * 180.02562 * 6 5 4 8 8 H 1.09008 * 109.47034 * 359.97438 * 7 6 5 9 9 C 1.53003 * 109.47155 * 240.00193 * 7 6 5 10 10 C 1.50702 * 109.47595 * 119.99728 * 7 6 5 11 11 O 1.21284 * 119.99770 * 14.76307 * 10 7 6 12 12 N 1.34776 * 120.00012 * 194.75911 * 10 7 6 13 13 C 1.48212 * 119.96945 * 356.34264 * 12 10 7 14 14 C 1.47137 * 110.34244 * 102.47497 * 13 12 10 15 15 C 1.53789 * 111.84289 * 58.29011 * 14 13 12 16 16 N 1.43468 * 107.96138 * 281.66964 * 15 14 13 17 17 C 1.36935 * 118.93864 * 273.60962 * 16 15 14 18 18 H 1.08005 * 119.99820 * 36.21239 * 17 16 15 19 19 C 1.38810 * 119.99876 * 216.21538 * 17 16 15 20 20 N 1.31621 * 120.00504 * 24.31315 * 19 17 16 21 21 Si 1.86803 * 119.99621 * 204.31839 * 19 17 16 22 22 H 1.48502 * 109.47161 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.47552 * 59.99791 * 21 19 17 24 24 H 1.48502 * 109.47205 * 299.99296 * 21 19 17 25 25 C 1.48849 * 122.11786 * 93.89415 * 16 15 14 26 26 C 1.43622 * 119.96761 * 176.32484 * 12 10 7 27 27 C 1.38248 * 119.99514 * 0.27726 * 6 5 4 28 28 C 1.38230 * 119.99642 * 359.53843 * 27 6 5 29 29 H 1.09000 * 109.47263 * 300.00549 * 1 2 3 30 30 H 1.08997 * 109.47083 * 60.00226 * 1 2 3 31 31 H 1.08997 * 109.47182 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47177 * 239.99682 * 2 1 3 33 33 H 1.08999 * 109.46624 * 119.99992 * 2 1 3 34 34 H 1.08009 * 119.99895 * 359.97438 * 4 3 2 35 35 H 1.08011 * 120.00260 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.47098 * 182.07438 * 9 7 6 37 37 H 1.09001 * 109.46999 * 302.06681 * 9 7 6 38 38 H 1.08997 * 109.47259 * 62.06901 * 9 7 6 39 39 H 1.08998 * 109.32397 * 342.19717 * 13 12 10 40 40 H 1.09007 * 109.17797 * 222.64597 * 13 12 10 41 41 H 1.09006 * 108.99742 * 297.68557 * 14 13 12 42 42 H 1.08997 * 109.00910 * 178.90335 * 14 13 12 43 43 H 1.09000 * 109.76533 * 162.05138 * 15 14 13 44 44 H 1.08999 * 109.80550 * 41.31087 * 15 14 13 45 45 H 0.97000 * 119.99262 * 5.99142 * 20 19 17 46 46 H 1.08995 * 109.48451 * 80.34541 * 25 16 15 47 47 H 1.09006 * 109.47940 * 200.37790 * 25 16 15 48 48 H 1.08998 * 108.87683 * 31.46069 * 26 12 10 49 49 H 1.08996 * 108.87953 * 149.90335 * 26 12 10 50 50 H 1.07993 * 119.99740 * 179.73084 * 27 6 5 51 51 H 1.08002 * 120.00002 * 180.21175 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7230 3.3759 1.1971 6 6 2.9538 4.0274 0.0001 7 6 3.4561 5.4482 0.0000 8 1 3.5765 5.7911 1.0277 9 6 2.4486 6.3453 -0.7218 10 6 4.7840 5.5116 -0.7100 11 8 5.1495 4.5811 -1.3966 12 7 5.5652 6.6024 -0.5819 13 6 5.0830 7.7718 0.1906 14 6 5.7113 7.8004 1.5208 15 6 7.2454 7.8546 1.4280 16 7 7.7178 6.5327 1.1320 17 6 7.9439 5.6630 2.1652 18 1 7.2963 5.6712 3.0296 19 6 9.0055 4.7709 2.1018 20 7 10.0479 5.0410 1.3450 21 14 8.9545 3.1868 3.0905 22 1 10.1991 2.4131 2.8504 23 1 7.7813 2.3788 2.6710 24 1 8.8425 3.5087 4.5359 25 6 7.9758 6.0781 -0.2617 26 6 6.8642 6.6303 -1.1938 27 6 2.7189 3.3773 -1.1972 28 6 2.2622 2.0726 -1.1971 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0823 1.5635 2.1325 35 1 2.9026 3.8853 2.1325 36 1 2.8291 7.3663 -0.7541 37 1 2.3001 5.9806 -1.7382 38 1 1.4988 6.3283 -0.1873 39 1 4.0009 7.7079 0.3040 40 1 5.3361 8.6854 -0.3474 41 1 5.4203 6.9048 2.0700 42 1 5.3571 8.6777 2.0620 43 1 7.6605 8.1901 2.3784 44 1 7.5434 8.5390 0.6337 45 1 10.1146 5.9005 0.9003 46 1 8.9471 6.4475 -0.5906 47 1 7.9706 4.9886 -0.2956 48 1 6.8380 6.0320 -2.1045 49 1 7.1079 7.6595 -1.4572 50 1 2.8951 3.8878 -2.1324 51 1 2.0819 1.5635 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982226878.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:15 Heat of formation + Delta-G solvation = 4.025873 kcal Electronic energy + Delta-G solvation = -29855.561753 eV Core-core repulsion = 26140.997651 eV Total energy + Delta-G solvation = -3714.564102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.37340 -39.03692 -37.08816 -35.05569 -34.53957 -32.70453 -32.30233 -30.80305 -30.72727 -28.59474 -27.56319 -25.36360 -24.90912 -23.83054 -23.00723 -22.57486 -21.63394 -20.39994 -19.73373 -18.52637 -17.25947 -16.77091 -16.38110 -15.72178 -15.40961 -15.08144 -14.73748 -14.23182 -14.11903 -13.87078 -13.77197 -13.67875 -13.58904 -13.41481 -13.22165 -12.95358 -12.65397 -12.58537 -12.35294 -12.10666 -12.07836 -11.77472 -11.56820 -11.45108 -11.23425 -11.08827 -10.99009 -10.68924 -10.68073 -10.63031 -10.39700 -10.29961 -10.19522 -9.96645 -9.32792 -9.21293 -8.65761 -8.35548 -8.27717 -8.08038 -6.77293 -5.98105 -3.30191 1.48448 1.64200 3.07963 3.47692 3.50828 3.58570 3.73461 3.95806 4.63938 4.64542 4.71914 4.82088 4.89299 5.06441 5.13315 5.15480 5.22630 5.28388 5.31418 5.34118 5.46732 5.49148 5.52898 5.60360 5.61480 5.68231 5.73149 5.77756 5.79719 5.82189 5.93084 6.03393 6.04352 6.04872 6.11325 6.22328 6.26535 6.27501 6.32330 6.33616 6.60075 6.73687 6.75452 6.76547 6.83668 6.91798 7.12507 7.19567 7.24407 7.86654 8.15592 8.63959 8.69167 9.22697 9.87857 10.32434 11.23239 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011094 B = 0.004362 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.312471 B = 6417.260601 C = 7955.540435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.086 4.086 4 C -0.122 4.122 5 C -0.106 4.106 6 C -0.069 4.069 7 C -0.070 4.070 8 H 0.099 0.901 9 C -0.142 4.142 10 C 0.524 3.476 11 O -0.537 6.537 12 N -0.584 5.584 13 C 0.115 3.885 14 C -0.173 4.173 15 C 0.164 3.836 16 N -0.591 5.591 17 C -0.358 4.358 18 H 0.047 0.953 19 C -0.011 4.011 20 N -0.909 5.909 21 Si 1.057 2.943 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.142 3.858 26 C 0.098 3.902 27 C -0.075 4.075 28 C -0.124 4.124 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.029 0.971 45 H 0.268 0.732 46 H 0.032 0.968 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.058 0.942 50 H 0.120 0.880 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.056 1.048 -3.857 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.140 4.140 5 C -0.124 4.124 6 C -0.069 4.069 7 C -0.092 4.092 8 H 0.117 0.883 9 C -0.199 4.199 10 C 0.311 3.689 11 O -0.414 6.414 12 N -0.315 5.315 13 C -0.008 4.008 14 C -0.214 4.214 15 C 0.036 3.964 16 N -0.313 5.313 17 C -0.487 4.487 18 H 0.064 0.936 19 C -0.215 4.215 20 N -0.547 5.547 21 Si 0.886 3.114 22 H -0.211 1.211 23 H -0.219 1.219 24 H -0.219 1.219 25 C 0.016 3.984 26 C -0.027 4.027 27 C -0.093 4.093 28 C -0.142 4.142 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.048 0.952 45 H 0.079 0.921 46 H 0.050 0.950 47 H 0.082 0.918 48 H 0.091 0.909 49 H 0.076 0.924 50 H 0.138 0.862 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -18.013 -0.855 -3.944 18.459 hybrid contribution -0.621 1.523 -0.025 1.645 sum -18.634 0.668 -3.969 19.064 Atomic orbital electron populations 1.21736 0.94969 1.01378 1.02103 1.20521 0.95911 0.93011 1.02736 1.19825 0.99530 0.95932 0.93299 1.20888 1.01029 0.94755 0.97357 1.21006 0.99078 0.94939 0.97345 1.19313 0.99498 0.94566 0.93559 1.20246 0.93406 0.94032 1.01490 0.88258 1.21908 0.98340 0.98855 1.00842 1.20210 0.85690 0.81823 0.81137 1.90672 1.74273 1.36033 1.40388 1.47286 1.16155 1.15746 1.52351 1.20954 0.98741 0.87853 0.93204 1.21896 1.01577 1.01548 0.96352 1.20273 0.90383 0.87542 0.98216 1.43630 1.77639 1.08717 1.01363 1.19751 1.10960 1.17768 1.00253 0.93577 1.25866 0.91125 1.03820 1.00716 1.70792 1.26216 1.25567 1.32114 0.83665 0.75878 0.76556 0.75275 1.21051 1.21919 1.21920 1.22097 0.93165 0.99152 0.83991 1.21766 0.83564 1.00552 0.96789 1.20886 0.96360 0.94480 0.97622 1.20927 1.01056 0.94937 0.97251 0.92636 0.92654 0.92654 0.91198 0.91171 0.86386 0.86201 0.91351 0.91914 0.91430 0.90339 0.91724 0.91434 0.92497 0.93475 0.95229 0.92114 0.94997 0.91818 0.90910 0.92403 0.86238 0.86528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.89 37.16 0.37 -0.87 16 2 C -0.08 -0.87 6.06 -27.88 -0.17 -1.04 16 3 C -0.09 -1.13 5.13 -104.63 -0.54 -1.67 16 4 C -0.12 -1.67 9.70 -39.59 -0.38 -2.06 16 5 C -0.11 -1.57 9.67 -39.59 -0.38 -1.95 16 6 C -0.07 -1.07 4.54 -104.62 -0.48 -1.55 16 7 C -0.07 -1.04 2.05 -92.92 -0.19 -1.23 16 8 H 0.10 1.43 7.19 -51.92 -0.37 1.06 16 9 C -0.14 -1.57 8.64 37.16 0.32 -1.24 16 10 C 0.52 9.74 6.85 -10.98 -0.08 9.66 16 11 O -0.54 -11.91 14.22 5.55 0.08 -11.83 16 12 N -0.58 -10.30 2.46 -176.43 -0.43 -10.73 16 13 C 0.11 1.62 5.05 -5.91 -0.03 1.59 16 14 C -0.17 -2.82 5.64 -29.14 -0.16 -2.98 16 15 C 0.16 3.30 5.63 -5.24 -0.03 3.27 16 16 N -0.59 -14.47 2.25 -171.79 -0.39 -14.85 16 17 C -0.36 -10.02 9.01 -15.06 -0.14 -10.15 16 18 H 0.05 1.32 7.94 -52.48 -0.42 0.90 16 19 C -0.01 -0.33 4.70 -17.43 -0.08 -0.41 16 20 N -0.91 -27.67 12.93 55.49 0.72 -26.96 16 21 Si 1.06 26.37 29.98 -169.99 -5.10 21.28 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C 0.14 3.38 5.23 -1.57 -0.01 3.37 16 26 C 0.10 1.88 5.29 -4.39 -0.02 1.86 16 27 C -0.08 -1.15 7.82 -39.58 -0.31 -1.46 16 28 C -0.12 -1.71 9.70 -39.59 -0.38 -2.09 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 34 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 35 H 0.12 1.63 7.95 -52.48 -0.42 1.22 16 36 H 0.07 0.67 5.78 -51.93 -0.30 0.37 16 37 H 0.06 0.70 7.30 -51.93 -0.38 0.32 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.91 4.14 -51.93 -0.21 0.70 16 40 H 0.06 0.80 8.05 -51.92 -0.42 0.38 16 41 H 0.07 1.28 7.88 -51.93 -0.41 0.87 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.99 8.02 -51.93 -0.42 0.58 16 44 H 0.03 0.55 7.59 -51.93 -0.39 0.15 16 45 H 0.27 8.16 6.65 -40.82 -0.27 7.88 16 46 H 0.03 0.78 7.17 -51.93 -0.37 0.41 16 47 H 0.06 1.78 7.49 -51.93 -0.39 1.39 16 48 H 0.07 1.42 7.32 -51.93 -0.38 1.04 16 49 H 0.06 0.96 7.73 -51.93 -0.40 0.56 16 50 H 0.12 1.81 7.14 -52.49 -0.37 1.44 16 51 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 392.11 15.07 5.91 5.91 Total: -1.00 -33.55 392.11 -10.43 -43.97 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -8.52 Total: 2.18 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -2.69 Total: -8.96 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.10 Total: -52.55 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -5.10 Total: 21.28 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.55 -10.43 -43.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982226878.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.997 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds