Wall clock time and date at job start Tue Mar 31 2020 16:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47133 * 2 1 4 4 C 1.38235 * 120.00243 * 89.99888 * 3 2 1 5 5 C 1.38225 * 120.00176 * 180.02562 * 4 3 2 6 6 C 1.38229 * 120.00456 * 359.95399 * 5 4 3 7 7 C 1.50695 * 120.00752 * 180.02562 * 6 5 4 8 8 H 1.09008 * 109.47034 * 359.97438 * 7 6 5 9 9 C 1.53003 * 109.47155 * 240.00193 * 7 6 5 10 10 C 1.50702 * 109.47595 * 119.99728 * 7 6 5 11 11 O 1.21284 * 119.99770 * 14.76307 * 10 7 6 12 12 N 1.34776 * 120.00012 * 194.75911 * 10 7 6 13 13 C 1.48212 * 119.96945 * 356.34264 * 12 10 7 14 14 C 1.47137 * 110.34244 * 102.47497 * 13 12 10 15 15 C 1.53789 * 111.84289 * 58.29011 * 14 13 12 16 16 N 1.43468 * 107.96138 * 281.66964 * 15 14 13 17 17 C 1.36935 * 118.93864 * 273.60962 * 16 15 14 18 18 H 1.08005 * 119.99820 * 36.21239 * 17 16 15 19 19 C 1.38810 * 119.99876 * 216.21538 * 17 16 15 20 20 N 1.31621 * 120.00504 * 24.31315 * 19 17 16 21 21 Si 1.86803 * 119.99621 * 204.31839 * 19 17 16 22 22 H 1.48502 * 109.47161 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.47552 * 59.99791 * 21 19 17 24 24 H 1.48502 * 109.47205 * 299.99296 * 21 19 17 25 25 C 1.48849 * 122.11786 * 93.89415 * 16 15 14 26 26 C 1.43622 * 119.96761 * 176.32484 * 12 10 7 27 27 C 1.38248 * 119.99514 * 0.27726 * 6 5 4 28 28 C 1.38230 * 119.99642 * 359.53843 * 27 6 5 29 29 H 1.09000 * 109.47263 * 300.00549 * 1 2 3 30 30 H 1.08997 * 109.47083 * 60.00226 * 1 2 3 31 31 H 1.08997 * 109.47182 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47177 * 239.99682 * 2 1 3 33 33 H 1.08999 * 109.46624 * 119.99992 * 2 1 3 34 34 H 1.08009 * 119.99895 * 359.97438 * 4 3 2 35 35 H 1.08011 * 120.00260 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.47098 * 182.07438 * 9 7 6 37 37 H 1.09001 * 109.46999 * 302.06681 * 9 7 6 38 38 H 1.08997 * 109.47259 * 62.06901 * 9 7 6 39 39 H 1.08998 * 109.32397 * 342.19717 * 13 12 10 40 40 H 1.09007 * 109.17797 * 222.64597 * 13 12 10 41 41 H 1.09006 * 108.99742 * 297.68557 * 14 13 12 42 42 H 1.08997 * 109.00910 * 178.90335 * 14 13 12 43 43 H 1.09000 * 109.76533 * 162.05138 * 15 14 13 44 44 H 1.08999 * 109.80550 * 41.31087 * 15 14 13 45 45 H 0.97000 * 119.99262 * 5.99142 * 20 19 17 46 46 H 1.08995 * 109.48451 * 80.34541 * 25 16 15 47 47 H 1.09006 * 109.47940 * 200.37790 * 25 16 15 48 48 H 1.08998 * 108.87683 * 31.46069 * 26 12 10 49 49 H 1.08996 * 108.87953 * 149.90335 * 26 12 10 50 50 H 1.07993 * 119.99740 * 179.73084 * 27 6 5 51 51 H 1.08002 * 120.00002 * 180.21175 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7230 3.3759 1.1971 6 6 2.9538 4.0274 0.0001 7 6 3.4561 5.4482 0.0000 8 1 3.5765 5.7911 1.0277 9 6 2.4486 6.3453 -0.7218 10 6 4.7840 5.5116 -0.7100 11 8 5.1495 4.5811 -1.3966 12 7 5.5652 6.6024 -0.5819 13 6 5.0830 7.7718 0.1906 14 6 5.7113 7.8004 1.5208 15 6 7.2454 7.8546 1.4280 16 7 7.7178 6.5327 1.1320 17 6 7.9439 5.6630 2.1652 18 1 7.2963 5.6712 3.0296 19 6 9.0055 4.7709 2.1018 20 7 10.0479 5.0410 1.3450 21 14 8.9545 3.1868 3.0905 22 1 10.1991 2.4131 2.8504 23 1 7.7813 2.3788 2.6710 24 1 8.8425 3.5087 4.5359 25 6 7.9758 6.0781 -0.2617 26 6 6.8642 6.6303 -1.1938 27 6 2.7189 3.3773 -1.1972 28 6 2.2622 2.0726 -1.1971 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0823 1.5635 2.1325 35 1 2.9026 3.8853 2.1325 36 1 2.8291 7.3663 -0.7541 37 1 2.3001 5.9806 -1.7382 38 1 1.4988 6.3283 -0.1873 39 1 4.0009 7.7079 0.3040 40 1 5.3361 8.6854 -0.3474 41 1 5.4203 6.9048 2.0700 42 1 5.3571 8.6777 2.0620 43 1 7.6605 8.1901 2.3784 44 1 7.5434 8.5390 0.6337 45 1 10.1146 5.9005 0.9003 46 1 8.9471 6.4475 -0.5906 47 1 7.9706 4.9886 -0.2956 48 1 6.8380 6.0320 -2.1045 49 1 7.1079 7.6595 -1.4572 50 1 2.8951 3.8878 -2.1324 51 1 2.0819 1.5635 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982226878.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:13 Heat of formation + Delta-G solvation = -13.584301 kcal Electronic energy + Delta-G solvation = -29856.325387 eV Core-core repulsion = 26140.997651 eV Total energy + Delta-G solvation = -3715.327736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.69203 -40.21838 -38.68271 -36.36320 -36.03432 -33.97810 -33.73643 -32.57477 -31.81803 -29.69909 -29.09270 -27.00642 -26.10514 -25.43368 -24.32670 -23.66809 -22.82561 -21.66549 -21.35497 -19.89122 -19.23888 -18.13939 -17.65715 -16.91878 -16.74801 -16.29641 -16.11625 -15.92558 -15.71567 -15.34733 -15.17654 -14.90496 -14.74192 -14.57358 -14.37754 -14.22415 -13.99810 -13.88288 -13.75334 -13.33847 -13.27768 -13.08192 -12.85612 -12.66878 -12.57268 -12.37634 -12.33066 -12.06975 -12.04702 -12.02790 -11.93369 -11.74515 -11.65537 -11.61087 -11.28498 -10.64822 -10.44631 -9.77129 -9.60000 -9.40179 -8.86925 -8.16969 -5.51445 0.39794 0.53866 1.46499 1.56143 1.66869 1.72704 2.16132 2.58911 2.85666 3.17235 3.49299 3.57935 3.63198 3.87958 3.94577 3.97179 4.09834 4.12520 4.17444 4.22163 4.26250 4.37085 4.42027 4.47765 4.52192 4.58159 4.65801 4.67977 4.70446 4.73067 4.79017 4.84674 4.87561 4.95147 5.00843 5.05562 5.08246 5.10451 5.15431 5.19239 5.21407 5.26585 5.38460 5.47536 5.53525 5.71146 5.72885 5.76876 5.90349 6.13208 6.40412 6.49657 7.15679 7.27076 7.77431 8.23357 8.96767 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011094 B = 0.004362 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.312471 B = 6417.260601 C = 7955.540435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 C -0.088 4.088 4 C -0.131 4.131 5 C -0.123 4.123 6 C -0.090 4.090 7 C -0.062 4.062 8 H 0.104 0.896 9 C -0.135 4.135 10 C 0.513 3.487 11 O -0.584 6.584 12 N -0.587 5.587 13 C 0.109 3.891 14 C -0.157 4.157 15 C 0.154 3.846 16 N -0.604 5.604 17 C -0.353 4.353 18 H 0.039 0.961 19 C -0.065 4.065 20 N -0.938 5.938 21 Si 1.098 2.902 22 H -0.290 1.290 23 H -0.294 1.294 24 H -0.266 1.266 25 C 0.153 3.847 26 C 0.111 3.889 27 C -0.090 4.090 28 C -0.134 4.134 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.127 0.873 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.037 0.963 42 H 0.098 0.902 43 H 0.032 0.968 44 H 0.051 0.949 45 H 0.255 0.745 46 H 0.017 0.983 47 H 0.008 0.992 48 H 0.063 0.937 49 H 0.093 0.907 50 H 0.112 0.888 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.868 2.214 -3.287 22.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 C -0.088 4.088 4 C -0.149 4.149 5 C -0.141 4.141 6 C -0.090 4.090 7 C -0.084 4.084 8 H 0.122 0.878 9 C -0.192 4.192 10 C 0.303 3.697 11 O -0.464 6.464 12 N -0.317 5.317 13 C -0.011 4.011 14 C -0.198 4.198 15 C 0.028 3.972 16 N -0.327 5.327 17 C -0.484 4.484 18 H 0.057 0.943 19 C -0.263 4.263 20 N -0.579 5.579 21 Si 0.924 3.076 22 H -0.216 1.216 23 H -0.222 1.222 24 H -0.192 1.192 25 C 0.026 3.974 26 C -0.014 4.014 27 C -0.108 4.108 28 C -0.152 4.152 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.155 0.845 35 H 0.145 0.855 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.116 0.884 41 H 0.056 0.944 42 H 0.116 0.884 43 H 0.050 0.950 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.034 0.966 47 H 0.027 0.973 48 H 0.082 0.918 49 H 0.111 0.889 50 H 0.131 0.869 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.868 0.377 -3.346 21.138 hybrid contribution 0.244 1.184 -0.198 1.225 sum -20.624 1.562 -3.544 20.985 Atomic orbital electron populations 1.21701 0.93486 1.02487 1.02035 1.20587 0.97121 0.91129 1.03313 1.20186 0.98582 0.97257 0.92811 1.21201 1.00612 0.94555 0.98504 1.21238 0.99640 0.95707 0.97494 1.19523 1.00228 0.95355 0.93892 1.20260 0.92005 0.94660 1.01432 0.87808 1.21905 0.98193 0.98706 1.00349 1.21030 0.86965 0.81200 0.80543 1.90645 1.75556 1.37724 1.42448 1.47493 1.15156 1.16749 1.52329 1.21288 1.00496 0.87558 0.91750 1.21678 0.98161 1.02011 0.97956 1.20529 0.92974 0.85537 0.98165 1.43793 1.78002 1.10206 1.00724 1.19943 1.09753 1.18008 1.00678 0.94317 1.27003 0.91106 1.06558 1.01673 1.70894 1.27606 1.25216 1.34208 0.83089 0.75299 0.73570 0.75660 1.21582 1.22175 1.19162 1.21834 0.94622 0.95860 0.85039 1.21479 0.83088 1.01883 0.94994 1.20961 0.97138 0.95288 0.97420 1.21204 1.00842 0.94683 0.98454 0.92671 0.92770 0.90959 0.90693 0.90550 0.84488 0.85508 0.89460 0.92393 0.89312 0.87009 0.88445 0.94409 0.88394 0.94950 0.93082 0.93462 0.96551 0.97342 0.91840 0.88897 0.86948 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.89 71.98 0.71 -1.40 16 2 C -0.08 -1.59 6.06 29.85 0.18 -1.41 16 3 C -0.09 -2.24 5.13 -19.87 -0.10 -2.34 16 4 C -0.13 -3.46 9.70 22.27 0.22 -3.25 16 5 C -0.12 -3.59 9.67 22.26 0.22 -3.38 16 6 C -0.09 -2.76 4.54 -19.87 -0.09 -2.85 16 7 C -0.06 -1.75 2.05 -12.29 -0.03 -1.78 16 8 H 0.10 2.79 7.19 -2.38 -0.02 2.77 16 9 C -0.13 -2.58 8.64 71.98 0.62 -1.95 16 10 C 0.51 18.90 6.85 87.66 0.60 19.50 16 11 O -0.58 -26.70 14.22 -3.04 -0.04 -26.74 16 12 N -0.59 -19.79 2.46 -830.49 -2.04 -21.83 16 13 C 0.11 2.65 5.05 84.23 0.43 3.07 16 14 C -0.16 -4.64 5.64 29.04 0.16 -4.47 16 15 C 0.15 5.96 5.63 87.21 0.49 6.45 16 16 N -0.60 -29.92 2.25 -697.41 -1.57 -31.48 16 17 C -0.35 -20.21 9.01 84.03 0.76 -19.45 16 18 H 0.04 2.25 7.94 -2.91 -0.02 2.22 16 19 C -0.07 -3.89 4.70 84.86 0.40 -3.49 16 20 N -0.94 -59.42 12.93 21.65 0.28 -59.14 16 21 Si 1.10 54.56 29.98 68.60 2.06 56.62 16 22 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 23 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 25 C 0.15 7.53 5.23 86.69 0.45 7.98 16 26 C 0.11 4.21 5.29 87.67 0.46 4.67 16 27 C -0.09 -2.77 7.82 22.27 0.17 -2.59 16 28 C -0.13 -3.67 9.70 22.27 0.22 -3.45 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 1.34 8.08 -2.39 -0.02 1.32 16 33 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 34 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 35 H 0.13 3.38 7.95 -2.90 -0.02 3.36 16 36 H 0.09 1.32 5.78 -2.39 -0.01 1.30 16 37 H 0.06 1.19 7.30 -2.39 -0.02 1.17 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 39 H 0.11 2.03 4.14 -2.39 -0.01 2.02 16 40 H 0.10 1.84 8.05 -2.38 -0.02 1.82 16 41 H 0.04 1.35 7.88 -2.38 -0.02 1.33 16 42 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.03 1.33 8.02 -2.39 -0.02 1.31 16 44 H 0.05 1.75 7.59 -2.39 -0.02 1.74 16 45 H 0.26 16.28 6.65 -92.71 -0.62 15.66 16 46 H 0.02 0.85 7.17 -2.39 -0.02 0.84 16 47 H 0.01 0.47 7.49 -2.38 -0.02 0.46 16 48 H 0.06 2.52 7.32 -2.39 -0.02 2.50 16 49 H 0.09 2.86 7.73 -2.39 -0.02 2.84 16 50 H 0.11 3.51 7.14 -2.91 -0.02 3.49 16 51 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -77.95 392.11 5.61 -72.34 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 1.05 Total: 20.37 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 5.87 Total: -10.13 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -3.33 Total: -112.45 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.04 Total: -26.74 kcal Atomic # 14 Polarization: 54.56 SS G_CDS: 2.06 Total: 56.62 kcal Total: -77.95 5.61 -72.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982226878.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.756 kcal (2) G-P(sol) polarization free energy of solvation -77.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds