Wall clock time and date at job start Tue Mar 31 2020 16:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47395 * 2 1 4 4 C 1.38234 * 119.99880 * 269.73013 * 3 2 1 5 5 C 1.38238 * 119.99649 * 179.78659 * 4 3 2 6 6 C 1.38232 * 119.99850 * 0.45821 * 5 4 3 7 7 C 1.50710 * 119.99606 * 179.79209 * 6 5 4 8 8 H 1.09004 * 109.46770 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47089 * 299.97654 * 7 6 5 10 10 C 1.50694 * 109.47263 * 59.98116 * 7 6 5 11 11 O 1.21280 * 119.99966 * 333.56386 * 10 7 6 12 12 N 1.34777 * 120.00194 * 153.56581 * 10 7 6 13 13 C 1.48216 * 119.96670 * 4.82301 * 12 10 7 14 14 C 1.47140 * 110.34222 * 102.46774 * 13 12 10 15 15 C 1.53789 * 111.84248 * 58.29141 * 14 13 12 16 16 N 1.43463 * 107.96584 * 281.67320 * 15 14 13 17 17 C 1.36942 * 118.93984 * 273.62838 * 16 15 14 18 18 H 1.08002 * 119.99824 * 27.42668 * 17 16 15 19 19 C 1.38804 * 119.99964 * 207.42737 * 17 16 15 20 20 N 1.31618 * 120.00421 * 11.06869 * 19 17 16 21 21 Si 1.86799 * 119.99942 * 191.07240 * 19 17 16 22 22 H 1.48502 * 109.47070 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47363 * 119.99689 * 21 19 17 24 24 H 1.48503 * 109.47275 * 240.00043 * 21 19 17 25 25 C 1.48860 * 122.12144 * 93.65111 * 16 15 14 26 26 C 1.43617 * 119.97495 * 184.54682 * 12 10 7 27 27 C 1.38229 * 120.00301 * 359.77470 * 6 5 4 28 28 C 1.38234 * 119.99840 * 89.99461 * 3 2 1 29 29 H 1.09002 * 109.46887 * 299.99840 * 1 2 3 30 30 H 1.08998 * 109.47211 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46920 * 59.99795 * 1 2 3 32 32 H 1.08997 * 109.47367 * 120.00174 * 2 1 3 33 33 H 1.09002 * 109.46887 * 240.00160 * 2 1 3 34 34 H 1.07997 * 120.00366 * 359.97438 * 4 3 2 35 35 H 1.08005 * 119.99948 * 180.25512 * 5 4 3 36 36 H 1.08995 * 109.46834 * 185.59827 * 9 7 6 37 37 H 1.08999 * 109.47205 * 305.60442 * 9 7 6 38 38 H 1.09006 * 109.46687 * 65.59902 * 9 7 6 39 39 H 1.09005 * 109.32042 * 222.72739 * 13 12 10 40 40 H 1.09001 * 109.32802 * 342.36924 * 13 12 10 41 41 H 1.09009 * 109.00276 * 178.90185 * 14 13 12 42 42 H 1.09004 * 109.00370 * 297.75717 * 14 13 12 43 43 H 1.09005 * 109.76308 * 41.29317 * 15 14 13 44 44 H 1.09004 * 109.76510 * 162.00339 * 15 14 13 45 45 H 0.96998 * 120.00254 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.48084 * 80.58032 * 25 16 15 47 47 H 1.08996 * 109.47959 * 200.61738 * 25 16 15 48 48 H 1.09006 * 108.87292 * 31.47008 * 26 12 10 49 49 H 1.08999 * 108.87647 * 149.90891 * 26 12 10 50 50 H 1.08003 * 120.00216 * 179.97438 * 27 6 5 51 51 H 1.07997 * 120.00178 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7248 3.3753 -1.1971 6 6 2.9547 4.0271 0.0000 7 6 3.4570 5.4480 0.0000 8 1 3.5773 5.7908 1.0277 9 6 4.8054 5.5123 -0.7203 10 6 2.4649 6.3315 -0.7113 11 8 1.7349 5.8635 -1.5592 12 7 2.3887 7.6419 -0.4052 13 6 3.3517 8.2356 0.5524 14 6 4.3882 8.9922 -0.1673 15 6 3.7833 10.1100 -1.0331 16 7 3.2610 9.5111 -2.2276 17 6 4.0986 9.3202 -3.2940 18 1 5.1580 9.1868 -3.1315 19 6 3.5861 9.2983 -4.5838 20 7 2.3442 9.6739 -4.8050 21 14 4.6589 8.7355 -6.0057 22 1 6.0045 8.3690 -5.4956 23 1 4.0375 7.5547 -6.6574 24 1 4.7877 9.8360 -6.9944 25 6 1.8379 9.0908 -2.3452 26 6 1.3784 8.4629 -1.0116 27 6 2.7236 3.3757 1.1971 28 6 2.2627 2.0725 1.1972 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 2.0927 1.5599 -2.1324 35 1 2.9051 3.8844 -2.1325 36 1 5.2156 6.5184 -0.6342 37 1 5.4938 4.7991 -0.2670 38 1 4.6671 5.2650 -1.7729 39 1 2.8208 8.9053 1.2292 40 1 3.8240 7.4403 1.1290 41 1 5.0721 9.4348 0.5571 42 1 4.9448 8.3093 -0.8092 43 1 2.9801 10.6051 -0.4874 44 1 4.5552 10.8353 -1.2908 45 1 1.9861 9.6590 -5.7064 46 1 1.2198 9.9596 -2.5716 47 1 1.7405 8.3568 -3.1450 48 1 0.4949 7.8530 -1.2003 49 1 1.1116 9.2622 -0.3202 50 1 2.9036 3.8848 2.1325 51 1 2.0822 1.5635 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982226879.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:18 Heat of formation + Delta-G solvation = -7.269806 kcal Electronic energy + Delta-G solvation = -29759.329533 eV Core-core repulsion = 26044.275614 eV Total energy + Delta-G solvation = -3715.053919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.60530 -40.16475 -38.53125 -36.16319 -35.94783 -33.92214 -33.63867 -32.55665 -31.78330 -29.67122 -29.18396 -27.07592 -26.10885 -25.28790 -24.22779 -23.62461 -22.95595 -21.58189 -21.26905 -19.52283 -18.75486 -18.10035 -17.69350 -16.97426 -16.66340 -16.30006 -16.09256 -15.93158 -15.53513 -15.24377 -14.92010 -14.85632 -14.62905 -14.54524 -14.22703 -14.07200 -13.98348 -13.82546 -13.60305 -13.42928 -13.18419 -12.95963 -12.89305 -12.74894 -12.53601 -12.38882 -12.36408 -12.20615 -12.08095 -12.01140 -11.82925 -11.70875 -11.63672 -11.50206 -11.31195 -10.57821 -10.50406 -9.74085 -9.49264 -9.38689 -8.62345 -7.85276 -5.32157 0.41951 0.56919 1.36766 1.40135 1.47916 1.75120 2.24851 2.48011 2.89565 3.30165 3.58637 3.68231 3.73419 3.87182 3.97351 4.02667 4.16847 4.19595 4.30682 4.32840 4.37919 4.40595 4.52492 4.56287 4.58629 4.64157 4.70003 4.73265 4.80468 4.84099 4.86392 4.90976 4.97520 5.04765 5.06855 5.08975 5.15894 5.21223 5.25571 5.31019 5.34904 5.38307 5.54761 5.58944 5.65454 5.72275 5.76356 5.77627 5.92138 6.16542 6.40655 6.60493 7.17256 7.37841 7.95088 8.36925 9.19209 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014122 B = 0.003615 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.246331 B = 7743.583744 C = 8589.406256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.087 4.087 4 C -0.139 4.139 5 C -0.098 4.098 6 C -0.091 4.091 7 C -0.057 4.057 8 H 0.133 0.867 9 C -0.133 4.133 10 C 0.509 3.491 11 O -0.587 6.587 12 N -0.586 5.586 13 C 0.113 3.887 14 C -0.163 4.163 15 C 0.152 3.848 16 N -0.603 5.603 17 C -0.248 4.248 18 H 0.064 0.936 19 C -0.054 4.054 20 N -0.937 5.937 21 Si 0.954 3.046 22 H -0.264 1.264 23 H -0.303 1.303 24 H -0.288 1.288 25 C 0.182 3.818 26 C 0.106 3.894 27 C -0.108 4.108 28 C -0.125 4.125 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.028 0.972 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.047 0.953 43 H 0.050 0.950 44 H 0.037 0.963 45 H 0.244 0.756 46 H 0.011 0.989 47 H 0.023 0.977 48 H 0.052 0.948 49 H 0.088 0.912 50 H 0.151 0.849 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.221 -13.817 19.689 24.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.087 4.087 4 C -0.157 4.157 5 C -0.117 4.117 6 C -0.091 4.091 7 C -0.078 4.078 8 H 0.150 0.850 9 C -0.190 4.190 10 C 0.298 3.702 11 O -0.467 6.467 12 N -0.316 5.316 13 C -0.007 4.007 14 C -0.204 4.204 15 C 0.026 3.974 16 N -0.325 5.325 17 C -0.379 4.379 18 H 0.082 0.918 19 C -0.248 4.248 20 N -0.584 5.584 21 Si 0.783 3.217 22 H -0.188 1.188 23 H -0.230 1.230 24 H -0.215 1.215 25 C 0.056 3.944 26 C -0.020 4.020 27 C -0.126 4.126 28 C -0.143 4.143 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.136 0.864 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.047 0.953 39 H 0.113 0.887 40 H 0.125 0.875 41 H 0.117 0.883 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.029 0.971 47 H 0.042 0.958 48 H 0.071 0.929 49 H 0.106 0.894 50 H 0.169 0.831 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.755 -14.000 19.142 23.780 hybrid contribution 0.098 0.270 -2.232 2.250 sum 1.853 -13.730 16.910 21.861 Atomic orbital electron populations 1.21742 0.94603 1.02395 1.01565 1.20576 0.96210 0.91271 1.03762 1.20195 0.98333 0.97401 0.92778 1.21135 1.01340 0.94644 0.98615 1.20979 0.98342 0.94599 0.97754 1.19528 1.01331 0.94381 0.93867 1.20276 0.94280 0.91121 1.02124 0.84962 1.21754 0.94373 1.03672 0.99189 1.21084 0.83845 0.82922 0.82311 1.90655 1.46142 1.75229 1.34695 1.47559 1.32662 1.07471 1.43921 1.21139 0.90368 0.98810 0.90377 1.21817 0.99062 0.99568 0.99913 1.20531 0.96456 0.93445 0.87005 1.43851 1.06679 1.69725 1.12280 1.19421 0.91161 1.41448 0.85854 0.91819 1.25740 0.97705 1.01444 0.99942 1.70161 1.16028 1.52555 1.19701 0.85394 0.79024 0.76994 0.80279 1.18796 1.23041 1.21516 1.21362 0.84284 0.95116 0.93608 1.21496 0.90509 0.94227 0.95778 1.21302 0.98787 0.95289 0.97223 1.21278 1.00011 0.94797 0.98205 0.92567 0.90736 0.94171 0.89135 0.90882 0.86352 0.89202 0.90891 0.89075 0.95270 0.88674 0.87458 0.88250 0.93476 0.93188 0.94426 0.94683 0.97118 0.95802 0.92943 0.89412 0.83109 0.83266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.89 71.98 0.71 -1.60 16 2 C -0.08 -1.31 6.07 29.85 0.18 -1.13 16 3 C -0.09 -1.95 5.13 -19.86 -0.10 -2.05 16 4 C -0.14 -3.93 9.70 22.27 0.22 -3.71 16 5 C -0.10 -3.26 7.96 22.27 0.18 -3.08 16 6 C -0.09 -2.56 4.66 -19.86 -0.09 -2.66 16 7 C -0.06 -1.57 2.08 -12.28 -0.03 -1.59 16 8 H 0.13 2.52 5.91 -2.38 -0.01 2.51 16 9 C -0.13 -3.65 8.87 71.98 0.64 -3.02 16 10 C 0.51 19.11 6.73 87.65 0.59 19.70 16 11 O -0.59 -28.13 14.15 -3.03 -0.04 -28.17 16 12 N -0.59 -20.10 2.47 -832.18 -2.05 -22.15 16 13 C 0.11 2.71 5.28 84.23 0.44 3.15 16 14 C -0.16 -4.58 5.54 29.04 0.16 -4.42 16 15 C 0.15 5.70 5.63 87.21 0.49 6.19 16 16 N -0.60 -29.69 2.53 -699.01 -1.77 -31.46 16 17 C -0.25 -13.81 9.26 84.03 0.78 -13.03 16 18 H 0.06 3.46 7.85 -2.91 -0.02 3.44 16 19 C -0.05 -3.15 5.02 84.86 0.43 -2.72 16 20 N -0.94 -58.42 10.85 21.65 0.23 -58.19 16 21 Si 0.95 47.83 29.57 68.60 2.03 49.86 16 22 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.30 -15.69 7.11 99.48 0.71 -14.99 16 24 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 25 C 0.18 9.27 5.15 86.40 0.44 9.72 16 26 C 0.11 4.16 5.17 87.39 0.45 4.61 16 27 C -0.11 -2.34 9.67 22.27 0.22 -2.12 16 28 C -0.13 -2.49 9.70 22.27 0.22 -2.28 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 1.10 8.09 -2.39 -0.02 1.08 16 33 H 0.07 1.13 8.08 -2.39 -0.02 1.12 16 34 H 0.12 3.12 8.06 -2.91 -0.02 3.10 16 35 H 0.09 3.57 6.93 -2.91 -0.02 3.55 16 36 H 0.07 1.98 5.58 -2.39 -0.01 1.96 16 37 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.03 1.00 7.59 -2.38 -0.02 0.98 16 39 H 0.10 1.79 8.06 -2.38 -0.02 1.77 16 40 H 0.11 1.85 5.47 -2.39 -0.01 1.83 16 41 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 42 H 0.05 1.59 5.82 -2.38 -0.01 1.57 16 43 H 0.05 1.70 7.58 -2.38 -0.02 1.68 16 44 H 0.04 1.45 8.02 -2.39 -0.02 1.43 16 45 H 0.24 14.94 8.31 -92.71 -0.77 14.17 16 46 H 0.01 0.59 7.97 -2.38 -0.02 0.57 16 47 H 0.02 1.45 6.58 -2.39 -0.02 1.43 16 48 H 0.05 2.21 7.44 -2.38 -0.02 2.20 16 49 H 0.09 2.85 7.73 -2.39 -0.02 2.83 16 50 H 0.15 2.21 7.95 -2.91 -0.02 2.19 16 51 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -77.74 390.19 5.22 -72.52 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.90 Total: 17.64 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 5.92 Total: -0.04 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -3.59 Total: -111.80 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.04 Total: -28.17 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Total: -77.74 5.22 -72.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982226879.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.246 kcal (2) G-P(sol) polarization free energy of solvation -77.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds