Wall clock time and date at job start Tue Mar 31 2020 16:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.46703 * 2 1 4 4 C 1.38257 * 120.00023 * 264.99693 * 3 2 1 5 5 C 1.38207 * 119.99806 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.00248 * 0.02562 * 5 4 3 7 7 C 1.38213 * 119.99889 * 359.97377 * 6 5 4 8 8 C 1.38209 * 119.99758 * 84.91488 * 3 2 1 9 9 C 1.50707 * 120.00333 * 0.03868 * 8 3 2 10 10 C 1.50695 * 109.47069 * 84.89109 * 9 8 3 11 11 O 1.21282 * 120.00043 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00186 * 179.97438 * 10 9 8 13 13 C 1.46928 * 120.62794 * 359.72188 * 12 10 9 14 14 C 1.53625 * 108.54327 * 126.36392 * 13 12 10 15 15 C 1.53042 * 109.23976 * 54.85810 * 14 13 12 16 16 N 1.46500 * 109.45820 * 178.49103 * 15 14 13 17 17 C 1.46498 * 120.00467 * 60.06873 * 16 15 14 18 18 C 1.36946 * 119.99636 * 240.06605 * 16 15 14 19 19 H 1.07994 * 120.00069 * 22.99224 * 18 16 15 20 20 C 1.38812 * 119.99626 * 202.99138 * 18 16 15 21 21 N 1.31617 * 120.00409 * 11.64115 * 20 18 16 22 22 Si 1.86804 * 119.99736 * 191.63730 * 20 18 16 23 23 H 1.48493 * 109.46987 * 60.00240 * 22 20 18 24 24 H 1.48498 * 109.47169 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47131 * 300.00203 * 22 20 18 26 26 C 1.53040 * 109.53549 * 298.50855 * 15 14 13 27 27 C 1.46923 * 120.63221 * 179.97438 * 12 10 9 28 28 H 1.08997 * 109.47208 * 60.00324 * 1 2 3 29 29 H 1.09001 * 109.46706 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47137 * 299.99644 * 1 2 3 31 31 H 1.08995 * 109.47235 * 240.00183 * 2 1 3 32 32 H 1.09002 * 109.46964 * 120.00090 * 2 1 3 33 33 H 1.07999 * 120.00027 * 0.28572 * 4 3 2 34 34 H 1.08005 * 119.99785 * 179.97438 * 5 4 3 35 35 H 1.08001 * 119.99934 * 179.97438 * 6 5 4 36 36 H 1.08001 * 120.00024 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.46931 * 204.89279 * 9 8 3 38 38 H 1.09002 * 109.46642 * 324.88869 * 9 8 3 39 39 H 1.08996 * 109.59033 * 246.20011 * 13 12 10 40 40 H 1.09006 * 109.58709 * 6.62714 * 13 12 10 41 41 H 1.08997 * 109.63905 * 294.86493 * 14 13 12 42 42 H 1.09005 * 109.46054 * 174.73830 * 14 13 12 43 43 H 1.09001 * 109.46082 * 58.52810 * 15 14 13 44 44 H 1.08993 * 109.47365 * 93.84238 * 17 16 15 45 45 H 1.08994 * 109.46912 * 213.84782 * 17 16 15 46 46 H 1.09001 * 109.46561 * 333.84410 * 17 16 15 47 47 H 0.96997 * 120.00496 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.49933 * 301.41170 * 26 15 14 49 49 H 1.09000 * 109.51991 * 181.33366 * 26 15 14 50 50 H 1.08996 * 109.58980 * 353.38305 * 27 12 10 51 51 H 1.09005 * 109.58180 * 113.66233 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3611 2.0379 -1.1928 5 6 2.8222 3.3407 -1.1927 6 6 2.9551 4.0270 0.0002 7 6 2.6264 3.4102 1.1926 8 6 2.1625 2.1077 1.1922 9 6 1.8032 1.4356 2.4924 10 6 2.9815 0.6373 2.9876 11 8 4.0115 0.6159 2.3477 12 7 2.8908 -0.0528 4.1417 13 6 1.6517 -0.0317 4.9311 14 6 1.2116 -1.4809 5.1884 15 6 2.3616 -2.2482 5.8448 16 7 1.9348 -3.6213 6.1252 17 6 1.5087 -4.4944 5.0287 18 6 1.9343 -4.0888 7.4124 19 1 1.8794 -3.3955 8.2386 20 6 2.0042 -5.4538 7.6550 21 7 2.3000 -6.2820 6.6758 22 14 1.6787 -6.1151 9.3715 23 1 0.3030 -5.7461 9.7914 24 1 1.8154 -7.5938 9.3664 25 1 2.6596 -5.5311 10.3212 26 6 3.5660 -2.2713 4.9009 27 6 4.0308 -0.8360 4.6372 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.2537 1.5031 -2.1249 34 1 3.0795 3.8226 -2.1244 35 1 3.3158 5.0449 0.0002 36 1 2.7306 3.9461 2.1244 37 1 1.5400 2.1919 3.2318 38 1 0.9540 0.7705 2.3349 39 1 1.8318 0.4724 5.8806 40 1 0.8744 0.4948 4.3771 41 1 0.9489 -1.9571 4.2438 42 1 0.3462 -1.4854 5.8511 43 1 2.6403 -1.7572 6.7772 44 1 2.3570 -5.0858 4.6844 45 1 0.7202 -5.1600 5.3797 46 1 1.1317 -3.8867 4.2060 47 1 2.3492 -7.2358 6.8455 48 1 3.2811 -2.7401 3.9590 49 1 4.3767 -2.8381 5.3588 50 1 4.8238 -0.8403 3.8895 51 1 4.4029 -0.3948 5.5619 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985496071.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:28 Heat of formation + Delta-G solvation = 2.414336 kcal Electronic energy + Delta-G solvation = -29056.029729 eV Core-core repulsion = 25341.395745 eV Total energy + Delta-G solvation = -3714.633984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.48644 -39.24132 -37.40761 -35.03410 -34.43147 -32.86775 -32.08248 -30.79467 -29.78708 -29.56367 -27.66548 -26.00429 -24.78731 -23.94585 -22.93906 -22.38654 -21.79013 -20.73030 -19.67201 -18.44143 -17.08535 -16.73958 -16.58706 -16.21018 -15.63932 -15.13274 -14.97281 -14.83076 -14.00437 -13.95517 -13.81947 -13.62711 -13.54348 -13.35480 -13.17110 -13.07858 -12.93881 -12.41157 -12.31406 -12.15463 -11.94942 -11.88817 -11.70296 -11.45834 -11.38208 -10.96794 -10.88488 -10.86005 -10.78547 -10.76235 -10.39748 -10.26150 -10.13057 -9.85824 -9.72445 -9.58071 -8.87305 -8.65364 -8.56384 -8.42571 -6.75127 -5.72356 -3.18889 1.24798 1.32465 2.73727 3.13646 3.37590 3.43238 3.43776 3.70221 4.47273 4.50937 4.63030 4.69467 4.79100 4.84400 5.02004 5.06742 5.09943 5.23349 5.24826 5.27524 5.36791 5.38854 5.43266 5.47615 5.50539 5.52183 5.62145 5.75918 5.79271 5.84329 5.90014 5.91576 6.00311 6.04502 6.13754 6.16229 6.25911 6.37453 6.38877 6.41052 6.53773 6.58025 6.63525 6.79501 6.92490 6.98085 7.01510 7.39329 7.56246 7.73509 7.80216 8.30672 8.40224 9.23870 9.87336 10.36826 11.32401 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025086 B = 0.002588 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.910917 B =10817.511217 C =11239.291542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.061 4.061 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.126 4.126 7 C -0.105 4.105 8 C -0.060 4.060 9 C -0.107 4.107 10 C 0.516 3.484 11 O -0.539 6.539 12 N -0.607 5.607 13 C 0.108 3.892 14 C -0.147 4.147 15 C 0.180 3.820 16 N -0.596 5.596 17 C 0.165 3.835 18 C -0.255 4.255 19 H 0.067 0.933 20 C 0.002 3.998 21 N -0.908 5.908 22 Si 0.905 3.095 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.283 1.283 26 C -0.144 4.144 27 C 0.114 3.886 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.026 0.974 45 H 0.042 0.958 46 H -0.004 1.004 47 H 0.253 0.747 48 H 0.058 0.942 49 H 0.074 0.926 50 H 0.084 0.916 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.319 18.738 -12.459 22.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.061 4.061 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.144 4.144 7 C -0.123 4.123 8 C -0.061 4.061 9 C -0.146 4.146 10 C 0.303 3.697 11 O -0.416 6.416 12 N -0.341 5.341 13 C -0.015 4.015 14 C -0.188 4.188 15 C 0.071 3.929 16 N -0.318 5.318 17 C 0.021 3.979 18 C -0.385 4.385 19 H 0.085 0.915 20 C -0.196 4.196 21 N -0.553 5.553 22 Si 0.735 3.265 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.210 1.210 26 C -0.184 4.184 27 C -0.009 4.009 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.015 0.985 47 H 0.063 0.937 48 H 0.077 0.923 49 H 0.093 0.907 50 H 0.103 0.897 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.765 18.482 -12.775 22.637 hybrid contribution -0.109 -0.545 0.987 1.133 sum -2.874 17.937 -11.788 21.655 Atomic orbital electron populations 1.21768 0.94604 1.02042 1.01980 1.20582 0.96037 0.92760 1.03334 1.19694 0.98090 0.95741 0.92603 1.20976 1.00194 0.95189 0.97341 1.21080 0.99941 0.94827 0.97957 1.21036 1.00955 0.99881 0.92571 1.20955 0.98771 0.94506 0.98109 1.19155 0.99757 0.93960 0.93195 1.20787 0.98055 1.00036 0.95744 1.20400 0.89235 0.79635 0.80387 1.90699 1.31259 1.63480 1.56171 1.48192 1.15140 1.48309 1.22449 1.21920 0.85405 0.98646 0.95550 1.22557 1.00799 0.93496 1.01913 1.20271 0.90325 0.86920 0.95348 1.43947 1.75180 1.08181 1.04449 1.20726 0.98207 0.91512 0.87504 1.19171 1.45064 0.90749 0.83517 0.91522 1.25033 1.00513 0.96827 0.97275 1.70053 1.51994 1.02467 1.30748 0.86341 0.78208 0.77786 0.84206 1.21127 1.21685 1.20982 1.22485 1.00748 0.94066 1.01098 1.21671 0.88316 0.91715 0.99163 0.92574 0.92067 0.92540 0.90978 0.90857 0.86261 0.86347 0.86303 0.86336 0.88255 0.87736 0.91308 0.90467 0.91908 0.90802 0.91977 0.95528 0.93948 0.98511 0.93720 0.92300 0.90701 0.89746 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.72 37.16 0.36 -0.96 16 2 C -0.09 -0.98 5.38 -27.88 -0.15 -1.13 16 3 C -0.06 -0.72 5.13 -104.62 -0.54 -1.25 16 4 C -0.12 -1.27 9.68 -39.59 -0.38 -1.65 16 5 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 6 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 7 C -0.11 -1.16 9.68 -39.58 -0.38 -1.54 16 8 C -0.06 -0.71 4.37 -104.62 -0.46 -1.17 16 9 C -0.11 -1.16 3.51 -29.03 -0.10 -1.26 16 10 C 0.52 7.38 6.89 -10.99 -0.08 7.31 16 11 O -0.54 -9.69 15.45 5.56 0.09 -9.60 16 12 N -0.61 -8.47 2.97 -172.53 -0.51 -8.98 16 13 C 0.11 1.30 6.37 -3.48 -0.02 1.27 16 14 C -0.15 -2.27 5.34 -26.39 -0.14 -2.41 16 15 C 0.18 3.43 2.55 -67.89 -0.17 3.26 16 16 N -0.60 -14.35 2.81 -173.44 -0.49 -14.83 16 17 C 0.17 3.99 8.03 59.85 0.48 4.47 16 18 C -0.26 -6.82 9.59 -15.06 -0.14 -6.96 16 19 H 0.07 1.73 7.82 -52.49 -0.41 1.32 16 20 C 0.00 0.05 5.12 -17.43 -0.09 -0.04 16 21 N -0.91 -26.22 10.64 55.49 0.59 -25.63 16 22 Si 0.90 21.55 29.57 -169.99 -5.03 16.53 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 26 C -0.14 -2.59 5.34 -26.63 -0.14 -2.73 16 27 C 0.11 1.75 6.43 -3.73 -0.02 1.73 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.48 6.79 -51.93 -0.35 0.13 16 31 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 32 H 0.07 0.93 6.42 -51.93 -0.33 0.60 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.10 0.85 7.84 -51.93 -0.41 0.44 16 38 H 0.10 1.02 5.18 -51.93 -0.27 0.75 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.72 5.93 -51.93 -0.31 0.41 16 41 H 0.06 1.02 6.72 -51.93 -0.35 0.67 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.06 1.20 7.86 -51.93 -0.41 0.79 16 44 H 0.03 0.70 7.42 -51.93 -0.39 0.32 16 45 H 0.04 1.11 7.22 -51.93 -0.37 0.73 16 46 H 0.00 -0.08 6.46 -51.93 -0.34 -0.41 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.79 16 48 H 0.06 1.13 7.72 -51.93 -0.40 0.73 16 49 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 50 H 0.08 1.38 7.01 -51.93 -0.36 1.01 16 51 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 393.82 15.07 5.93 5.93 Total: -1.00 -31.82 393.82 -10.67 -42.49 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -8.48 Total: 0.41 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -2.78 Total: -6.32 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: -0.41 Total: -49.44 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.82 -10.67 -42.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985496071.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.905 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds