Wall clock time and date at job start Tue Mar 31 2020 16:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.46703 * 2 1 4 4 C 1.38257 * 120.00023 * 264.99693 * 3 2 1 5 5 C 1.38207 * 119.99806 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.00248 * 0.02562 * 5 4 3 7 7 C 1.38213 * 119.99889 * 359.97377 * 6 5 4 8 8 C 1.38209 * 119.99758 * 84.91488 * 3 2 1 9 9 C 1.50707 * 120.00333 * 0.03868 * 8 3 2 10 10 C 1.50695 * 109.47069 * 84.89109 * 9 8 3 11 11 O 1.21282 * 120.00043 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00186 * 179.97438 * 10 9 8 13 13 C 1.46928 * 120.62794 * 359.72188 * 12 10 9 14 14 C 1.53625 * 108.54327 * 126.36392 * 13 12 10 15 15 C 1.53042 * 109.23976 * 54.85810 * 14 13 12 16 16 N 1.46500 * 109.45820 * 178.49103 * 15 14 13 17 17 C 1.46498 * 120.00467 * 60.06873 * 16 15 14 18 18 C 1.36946 * 119.99636 * 240.06605 * 16 15 14 19 19 H 1.07994 * 120.00069 * 22.99224 * 18 16 15 20 20 C 1.38812 * 119.99626 * 202.99138 * 18 16 15 21 21 N 1.31617 * 120.00409 * 11.64115 * 20 18 16 22 22 Si 1.86804 * 119.99736 * 191.63730 * 20 18 16 23 23 H 1.48493 * 109.46987 * 60.00240 * 22 20 18 24 24 H 1.48498 * 109.47169 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47131 * 300.00203 * 22 20 18 26 26 C 1.53040 * 109.53549 * 298.50855 * 15 14 13 27 27 C 1.46923 * 120.63221 * 179.97438 * 12 10 9 28 28 H 1.08997 * 109.47208 * 60.00324 * 1 2 3 29 29 H 1.09001 * 109.46706 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47137 * 299.99644 * 1 2 3 31 31 H 1.08995 * 109.47235 * 240.00183 * 2 1 3 32 32 H 1.09002 * 109.46964 * 120.00090 * 2 1 3 33 33 H 1.07999 * 120.00027 * 0.28572 * 4 3 2 34 34 H 1.08005 * 119.99785 * 179.97438 * 5 4 3 35 35 H 1.08001 * 119.99934 * 179.97438 * 6 5 4 36 36 H 1.08001 * 120.00024 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.46931 * 204.89279 * 9 8 3 38 38 H 1.09002 * 109.46642 * 324.88869 * 9 8 3 39 39 H 1.08996 * 109.59033 * 246.20011 * 13 12 10 40 40 H 1.09006 * 109.58709 * 6.62714 * 13 12 10 41 41 H 1.08997 * 109.63905 * 294.86493 * 14 13 12 42 42 H 1.09005 * 109.46054 * 174.73830 * 14 13 12 43 43 H 1.09001 * 109.46082 * 58.52810 * 15 14 13 44 44 H 1.08993 * 109.47365 * 93.84238 * 17 16 15 45 45 H 1.08994 * 109.46912 * 213.84782 * 17 16 15 46 46 H 1.09001 * 109.46561 * 333.84410 * 17 16 15 47 47 H 0.96997 * 120.00496 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.49933 * 301.41170 * 26 15 14 49 49 H 1.09000 * 109.51991 * 181.33366 * 26 15 14 50 50 H 1.08996 * 109.58980 * 353.38305 * 27 12 10 51 51 H 1.09005 * 109.58180 * 113.66233 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3611 2.0379 -1.1928 5 6 2.8222 3.3407 -1.1927 6 6 2.9551 4.0270 0.0002 7 6 2.6264 3.4102 1.1926 8 6 2.1625 2.1077 1.1922 9 6 1.8032 1.4356 2.4924 10 6 2.9815 0.6373 2.9876 11 8 4.0115 0.6159 2.3477 12 7 2.8908 -0.0528 4.1417 13 6 1.6517 -0.0317 4.9311 14 6 1.2116 -1.4809 5.1884 15 6 2.3616 -2.2482 5.8448 16 7 1.9348 -3.6213 6.1252 17 6 1.5087 -4.4944 5.0287 18 6 1.9343 -4.0888 7.4124 19 1 1.8794 -3.3955 8.2386 20 6 2.0042 -5.4538 7.6550 21 7 2.3000 -6.2820 6.6758 22 14 1.6787 -6.1151 9.3715 23 1 0.3030 -5.7461 9.7914 24 1 1.8154 -7.5938 9.3664 25 1 2.6596 -5.5311 10.3212 26 6 3.5660 -2.2713 4.9009 27 6 4.0308 -0.8360 4.6372 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.2537 1.5031 -2.1249 34 1 3.0795 3.8226 -2.1244 35 1 3.3158 5.0449 0.0002 36 1 2.7306 3.9461 2.1244 37 1 1.5400 2.1919 3.2318 38 1 0.9540 0.7705 2.3349 39 1 1.8318 0.4724 5.8806 40 1 0.8744 0.4948 4.3771 41 1 0.9489 -1.9571 4.2438 42 1 0.3462 -1.4854 5.8511 43 1 2.6403 -1.7572 6.7772 44 1 2.3570 -5.0858 4.6844 45 1 0.7202 -5.1600 5.3797 46 1 1.1317 -3.8867 4.2060 47 1 2.3492 -7.2358 6.8455 48 1 3.2811 -2.7401 3.9590 49 1 4.3767 -2.8381 5.3588 50 1 4.8238 -0.8403 3.8895 51 1 4.4029 -0.3948 5.5619 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985496071.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:27 Heat of formation + Delta-G solvation = -13.520164 kcal Electronic energy + Delta-G solvation = -29056.720700 eV Core-core repulsion = 25341.395745 eV Total energy + Delta-G solvation = -3715.324955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.50938 -40.20542 -38.79911 -36.65744 -35.21155 -34.05455 -33.50108 -32.02387 -31.42467 -30.35105 -28.59695 -28.02368 -26.24201 -24.74543 -24.14367 -23.82793 -22.83613 -21.66935 -20.93031 -19.68934 -18.75006 -18.18878 -17.41727 -17.08856 -16.96170 -16.62995 -15.91226 -15.90150 -15.71045 -15.12184 -15.10343 -14.77622 -14.60024 -14.57081 -14.32970 -14.06317 -13.90513 -13.85829 -13.64485 -13.16240 -13.09831 -12.94857 -12.82505 -12.77110 -12.63550 -12.59786 -12.34190 -12.23164 -12.14302 -12.06254 -11.81151 -11.68918 -11.58959 -11.52635 -11.22474 -10.84836 -10.59159 -9.65832 -9.62762 -9.44555 -8.74682 -7.79903 -5.28262 0.45921 0.54873 1.47878 1.49726 1.56206 1.65246 2.06487 2.52377 2.89946 3.33520 3.59637 3.67198 3.75107 3.86981 3.95520 4.03844 4.10982 4.14644 4.21419 4.32018 4.34637 4.36822 4.40648 4.49236 4.52769 4.58673 4.65179 4.72428 4.74532 4.77809 4.83115 4.84776 4.93310 5.02079 5.03611 5.09008 5.11174 5.18539 5.25818 5.26589 5.38318 5.39699 5.52289 5.61215 5.63088 5.65931 5.68628 5.73481 5.78639 6.17648 6.35716 6.47705 7.17831 7.20754 7.91051 8.35639 9.23282 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025086 B = 0.002588 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.910917 B =10817.511217 C =11239.291542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.079 4.079 4 C -0.133 4.133 5 C -0.125 4.125 6 C -0.134 4.134 7 C -0.117 4.117 8 C -0.079 4.079 9 C -0.099 4.099 10 C 0.515 3.485 11 O -0.581 6.581 12 N -0.608 5.608 13 C 0.113 3.887 14 C -0.136 4.136 15 C 0.174 3.826 16 N -0.611 5.611 17 C 0.184 3.816 18 C -0.259 4.259 19 H 0.075 0.925 20 C -0.057 4.057 21 N -0.942 5.942 22 Si 0.968 3.032 23 H -0.277 1.277 24 H -0.299 1.299 25 H -0.276 1.276 26 C -0.131 4.131 27 C 0.124 3.876 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.131 0.869 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.090 0.910 40 H 0.115 0.885 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.063 0.937 44 H -0.006 1.006 45 H 0.015 0.985 46 H 0.026 0.974 47 H 0.246 0.754 48 H 0.040 0.960 49 H 0.049 0.951 50 H 0.071 0.929 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.627 21.682 -12.144 25.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 C -0.079 4.079 4 C -0.151 4.151 5 C -0.143 4.143 6 C -0.152 4.152 7 C -0.135 4.135 8 C -0.080 4.080 9 C -0.138 4.138 10 C 0.305 3.695 11 O -0.461 6.461 12 N -0.341 5.341 13 C -0.009 4.009 14 C -0.176 4.176 15 C 0.067 3.933 16 N -0.333 5.333 17 C 0.039 3.961 18 C -0.389 4.389 19 H 0.093 0.907 20 C -0.252 4.252 21 N -0.589 5.589 22 Si 0.797 3.203 23 H -0.202 1.202 24 H -0.226 1.226 25 H -0.202 1.202 26 C -0.171 4.171 27 C 0.001 3.999 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.149 0.851 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.135 0.865 39 H 0.108 0.892 40 H 0.133 0.867 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.012 0.988 45 H 0.034 0.966 46 H 0.044 0.956 47 H 0.055 0.945 48 H 0.058 0.942 49 H 0.067 0.933 50 H 0.090 0.910 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.094 21.479 -12.449 25.161 hybrid contribution 0.351 -1.402 0.822 1.663 sum -3.743 20.077 -11.627 23.500 Atomic orbital electron populations 1.21738 0.93073 1.02382 1.02691 1.20543 0.97363 0.92443 1.02144 1.19894 0.98739 0.96009 0.93268 1.21239 1.00340 0.95872 0.97662 1.21416 0.99189 0.94618 0.99069 1.21384 1.00466 1.00970 0.92370 1.21253 0.98583 0.94497 0.99201 1.19347 1.00586 0.94549 0.93492 1.20820 0.96477 1.00412 0.96123 1.21028 0.89652 0.79235 0.79598 1.90682 1.33234 1.64952 1.57224 1.48263 1.15262 1.47831 1.22737 1.22064 0.85340 0.96505 0.96967 1.22375 0.99114 0.95199 1.00934 1.20529 0.91986 0.84782 0.96002 1.44197 1.75573 1.09927 1.03644 1.20381 0.96027 0.91348 0.88318 1.19570 1.43431 0.91027 0.84878 0.90743 1.25816 1.01255 0.97335 1.00763 1.70240 1.53888 1.02167 1.32646 0.85320 0.78371 0.76440 0.80177 1.20249 1.22570 1.20150 1.22271 0.99596 0.95684 0.99576 1.21427 0.88730 0.90164 0.99592 0.91811 0.91877 0.91857 0.91151 0.93044 0.85095 0.84150 0.84124 0.84848 0.85188 0.86470 0.89212 0.86720 0.92827 0.90335 0.91891 0.98818 0.96627 0.95607 0.94505 0.94156 0.93258 0.91026 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.72 71.98 0.70 -1.62 16 2 C -0.09 -1.86 5.38 29.85 0.16 -1.70 16 3 C -0.08 -1.76 5.13 -19.87 -0.10 -1.87 16 4 C -0.13 -2.68 9.68 22.27 0.22 -2.46 16 5 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 6 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 7 C -0.12 -2.31 9.68 22.27 0.22 -2.10 16 8 C -0.08 -1.72 4.37 -19.86 -0.09 -1.81 16 9 C -0.10 -1.87 3.51 29.10 0.10 -1.76 16 10 C 0.52 13.84 6.89 87.66 0.60 14.44 16 11 O -0.58 -20.66 15.45 -3.04 -0.05 -20.71 16 12 N -0.61 -15.65 2.97 -818.14 -2.43 -18.08 16 13 C 0.11 2.29 6.37 86.51 0.55 2.84 16 14 C -0.14 -3.88 5.34 30.82 0.16 -3.72 16 15 C 0.17 6.50 2.55 45.02 0.11 6.61 16 16 N -0.61 -29.64 2.81 -702.64 -1.98 -31.62 16 17 C 0.18 9.15 8.03 127.77 1.03 10.18 16 18 C -0.26 -13.84 9.59 84.03 0.81 -13.04 16 19 H 0.07 3.79 7.82 -2.91 -0.02 3.77 16 20 C -0.06 -3.18 5.12 84.86 0.43 -2.74 16 21 N -0.94 -56.20 10.64 21.65 0.23 -55.97 16 22 Si 0.97 44.70 29.57 68.60 2.03 46.72 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 24 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 26 C -0.13 -4.78 5.34 30.66 0.16 -4.62 16 27 C 0.12 3.73 6.43 86.35 0.55 4.28 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 0.94 6.79 -2.38 -0.02 0.92 16 31 H 0.07 1.45 8.05 -2.39 -0.02 1.43 16 32 H 0.05 1.30 6.42 -2.39 -0.02 1.28 16 33 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.13 1.63 7.84 -2.39 -0.02 1.61 16 38 H 0.12 1.90 5.18 -2.39 -0.01 1.89 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 40 H 0.11 1.55 5.93 -2.38 -0.01 1.53 16 41 H 0.05 1.63 6.72 -2.39 -0.02 1.62 16 42 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 43 H 0.06 2.34 7.86 -2.39 -0.02 2.32 16 44 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 45 H 0.01 0.82 7.22 -2.39 -0.02 0.80 16 46 H 0.03 1.10 6.46 -2.39 -0.02 1.08 16 47 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 48 H 0.04 1.60 7.72 -2.39 -0.02 1.58 16 49 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.07 2.36 7.01 -2.39 -0.02 2.35 16 51 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -71.32 393.82 4.78 -66.54 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.90 Total: 16.37 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 6.07 Total: -3.26 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -4.17 Total: -105.66 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.05 Total: -20.71 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -71.32 4.78 -66.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985496071.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.016 kcal (2) G-P(sol) polarization free energy of solvation -71.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds