Wall clock time and date at job start Tue Mar 31 2020 16:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.46880 * 2 1 4 4 C 1.38263 * 119.99809 * 270.27792 * 3 2 1 5 5 C 1.38215 * 119.99522 * 180.27566 * 4 3 2 6 6 C 1.38261 * 120.00218 * 359.47089 * 5 4 3 7 7 C 1.38213 * 119.99749 * 0.25025 * 6 5 4 8 8 C 1.50699 * 119.99582 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47263 * 89.99996 * 8 7 6 10 10 O 1.21279 * 120.00064 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00005 * 179.97438 * 9 8 7 12 12 C 1.46926 * 120.62582 * 359.72508 * 11 9 8 13 13 C 1.53623 * 108.54119 * 126.37099 * 12 11 9 14 14 C 1.53042 * 109.24541 * 54.84908 * 13 12 11 15 15 N 1.46496 * 109.46029 * 178.49115 * 14 13 12 16 16 C 1.46503 * 119.99999 * 60.07037 * 15 14 13 17 17 C 1.36940 * 120.00117 * 240.06951 * 15 14 13 18 18 H 1.07996 * 120.00107 * 22.99404 * 17 15 14 19 19 C 1.38814 * 119.99982 * 202.99111 * 17 15 14 20 20 N 1.31617 * 120.00023 * 11.64280 * 19 17 15 21 21 Si 1.86803 * 120.00065 * 191.64597 * 19 17 15 22 22 H 1.48498 * 109.46921 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47076 * 119.99897 * 21 19 17 24 24 H 1.48496 * 109.47073 * 240.00276 * 21 19 17 25 25 C 1.53032 * 109.53747 * 298.51232 * 14 13 12 26 26 C 1.46921 * 120.63087 * 179.97438 * 11 9 8 27 27 C 1.38206 * 120.00145 * 89.99849 * 3 2 1 28 28 H 1.08997 * 109.47270 * 300.00089 * 1 2 3 29 29 H 1.09001 * 109.47200 * 59.99999 * 1 2 3 30 30 H 1.09009 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47270 * 239.99911 * 2 1 3 32 32 H 1.09004 * 109.47313 * 119.99471 * 2 1 3 33 33 H 1.07996 * 120.00062 * 0.02562 * 4 3 2 34 34 H 1.07999 * 119.99589 * 179.73954 * 5 4 3 35 35 H 1.08003 * 119.99665 * 180.28062 * 6 5 4 36 36 H 1.09003 * 109.46729 * 210.00130 * 8 7 6 37 37 H 1.09007 * 109.47220 * 329.99981 * 8 7 6 38 38 H 1.09004 * 109.58406 * 246.19369 * 12 11 9 39 39 H 1.08999 * 109.59104 * 6.62121 * 12 11 9 40 40 H 1.08999 * 109.63069 * 294.85430 * 13 12 11 41 41 H 1.09000 * 109.43174 * 174.71823 * 13 12 11 42 42 H 1.08997 * 109.45926 * 58.53247 * 14 13 12 43 43 H 1.08999 * 109.47196 * 93.84211 * 16 15 14 44 44 H 1.09003 * 109.46790 * 213.84611 * 16 15 14 45 45 H 1.09003 * 109.47106 * 333.84124 * 16 15 14 46 46 H 0.97001 * 120.00152 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.50165 * 301.41116 * 25 14 13 48 48 H 1.09004 * 109.52451 * 181.33124 * 25 14 13 49 49 H 1.09004 * 109.58357 * 353.38152 * 26 11 9 50 50 H 1.09008 * 109.58168 * 113.65706 * 26 11 9 51 51 H 1.08004 * 120.00079 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2572 2.0745 -1.1974 5 6 2.7233 3.3757 -1.1974 6 6 2.9542 4.0273 0.0000 7 6 2.7238 3.3758 1.1969 8 6 2.9749 4.0863 2.5020 9 6 1.7191 4.7966 2.9370 10 8 0.7185 4.7319 2.2547 11 7 1.7076 5.5030 4.0848 12 6 2.9098 5.5847 4.9255 13 6 3.2267 7.0658 5.1821 14 6 1.9946 7.7491 5.7797 15 7 2.3031 9.1536 6.0598 16 6 2.7080 10.0459 4.9707 17 6 2.2130 9.6324 7.3396 18 1 2.2852 8.9535 8.1764 19 6 2.0289 10.9903 7.5613 20 7 1.7130 11.7837 6.5598 21 14 2.2296 11.6915 9.2810 22 1 2.5847 10.5994 10.2226 23 1 3.3092 12.7113 9.2769 24 1 0.9553 12.3213 9.7106 25 6 0.8334 7.6706 4.7860 26 6 0.4911 6.2014 4.5219 27 6 2.2625 2.0724 1.1969 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.0725 1.5671 -2.1326 34 1 2.9030 3.8849 -2.1327 35 1 3.3140 5.0457 -0.0001 36 1 3.2631 3.3596 3.2616 37 1 3.7769 4.8130 2.3716 38 1 2.7281 5.0777 5.8732 39 1 3.7478 5.1139 4.4116 40 1 3.4926 7.5515 4.2432 41 1 4.0599 7.1427 5.8806 42 1 1.7145 7.2474 6.7059 43 1 1.8325 10.5672 4.5835 44 1 3.4277 10.7735 5.3458 45 1 3.1650 9.4610 4.1726 46 1 1.5840 12.7325 6.7148 47 1 1.1217 8.1506 3.8508 48 1 -0.0371 8.1779 5.2021 49 1 -0.2672 6.1375 3.7414 50 1 0.1144 5.7419 5.4358 51 1 2.0829 1.5632 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985499589.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:31 Heat of formation + Delta-G solvation = -0.397629 kcal Electronic energy + Delta-G solvation = -28278.076628 eV Core-core repulsion = 24563.320708 eV Total energy + Delta-G solvation = -3714.755919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.32994 -39.28628 -37.45550 -35.04754 -34.61046 -32.75447 -32.06774 -30.79682 -29.80509 -29.59699 -27.66438 -26.00634 -24.75819 -24.11919 -22.94588 -22.39839 -21.88519 -20.72517 -19.58537 -18.42650 -17.07795 -16.74045 -16.64883 -15.97432 -15.71658 -15.12472 -15.01186 -14.97827 -14.03936 -13.94786 -13.86528 -13.74718 -13.54611 -13.35552 -13.15094 -13.09958 -13.00044 -12.39989 -12.32126 -12.19357 -11.96849 -11.89468 -11.70578 -11.48702 -11.39700 -11.03661 -10.93665 -10.89726 -10.86197 -10.79904 -10.39300 -10.22008 -10.12438 -9.86224 -9.72780 -9.57632 -8.87010 -8.69099 -8.57256 -8.42736 -6.75361 -5.72690 -3.19177 1.23647 1.31348 2.73938 3.13078 3.36311 3.43477 3.45325 3.68958 4.46256 4.47615 4.54701 4.68267 4.72041 4.92156 4.98924 5.05412 5.10663 5.13190 5.24035 5.28766 5.33014 5.37080 5.40497 5.43454 5.47837 5.50726 5.61299 5.65370 5.68715 5.78756 5.89981 5.92961 5.96525 6.01755 6.03961 6.16255 6.25853 6.36315 6.38180 6.46406 6.51465 6.53958 6.63421 6.79616 6.91467 6.98138 7.01502 7.39362 7.56289 7.73788 7.80488 8.30455 8.39860 9.23555 9.87069 10.36571 11.32108 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.030235 B = 0.002181 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.866946 B =12836.839607 C =13076.321918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.084 4.084 4 C -0.121 4.121 5 C -0.116 4.116 6 C -0.109 4.109 7 C -0.058 4.058 8 C -0.103 4.103 9 C 0.515 3.485 10 O -0.540 6.540 11 N -0.607 5.607 12 C 0.108 3.892 13 C -0.148 4.148 14 C 0.180 3.820 15 N -0.597 5.597 16 C 0.165 3.835 17 C -0.253 4.253 18 H 0.068 0.932 19 C 0.000 4.000 20 N -0.907 5.907 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.291 1.291 25 C -0.144 4.144 26 C 0.114 3.886 27 C -0.103 4.103 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.027 0.973 44 H 0.042 0.958 45 H -0.003 1.003 46 H 0.251 0.749 47 H 0.058 0.942 48 H 0.074 0.926 49 H 0.084 0.916 50 H 0.063 0.937 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.556 -21.590 -12.049 24.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.084 4.084 4 C -0.139 4.139 5 C -0.134 4.134 6 C -0.127 4.127 7 C -0.059 4.059 8 C -0.143 4.143 9 C 0.303 3.697 10 O -0.417 6.417 11 N -0.341 5.341 12 C -0.015 4.015 13 C -0.188 4.188 14 C 0.071 3.929 15 N -0.318 5.318 16 C 0.020 3.980 17 C -0.383 4.383 18 H 0.086 0.914 19 C -0.198 4.198 20 N -0.552 5.552 21 Si 0.734 3.266 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.218 1.218 25 C -0.184 4.184 26 C -0.009 4.009 27 C -0.121 4.121 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.045 0.955 44 H 0.061 0.939 45 H 0.015 0.985 46 H 0.062 0.938 47 H 0.077 0.923 48 H 0.093 0.907 49 H 0.102 0.898 50 H 0.081 0.919 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.998 -21.403 -12.384 24.908 hybrid contribution 0.100 0.777 0.961 1.240 sum 3.098 -20.625 -11.423 23.780 Atomic orbital electron populations 1.21752 0.94685 1.01501 1.02537 1.20525 0.96272 0.92668 1.02582 1.19819 0.99217 0.96229 0.93111 1.20970 1.00485 0.95120 0.97330 1.21066 0.99595 0.94919 0.97848 1.20984 1.00276 0.99437 0.91998 1.19292 0.98941 0.93936 0.93712 1.20725 0.97295 1.00263 0.96005 1.20428 0.89785 0.79050 0.80456 1.90697 1.35375 1.62154 1.53498 1.48194 1.13559 1.50138 1.22204 1.21921 0.86462 0.98444 0.94672 1.22557 1.01041 0.93227 1.01957 1.20274 0.90611 0.86700 0.95322 1.43969 1.77910 1.04415 1.05530 1.20734 0.97887 0.91470 0.87908 1.19257 1.43804 0.91749 0.83492 0.91410 1.25046 1.00222 0.97293 0.97218 1.70078 1.51346 1.04115 1.29701 0.86192 0.77314 0.78937 0.84138 1.20353 1.21694 1.21771 1.22483 1.01268 0.93652 1.01000 1.21669 0.86496 0.92865 0.99820 1.20808 0.99409 0.94346 0.97525 0.92358 0.92558 0.92532 0.91208 0.91163 0.86424 0.86156 0.86253 0.88121 0.87905 0.91318 0.90392 0.91917 0.90796 0.91954 0.95506 0.93929 0.98491 0.93832 0.92298 0.90694 0.89753 0.91870 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.89 37.16 0.37 -0.80 16 2 C -0.08 -0.65 6.06 -27.88 -0.17 -0.82 16 3 C -0.08 -0.85 5.13 -104.62 -0.54 -1.39 16 4 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 5 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 6 C -0.11 -1.25 9.70 -39.58 -0.38 -1.63 16 7 C -0.06 -0.68 4.37 -104.62 -0.46 -1.14 16 8 C -0.10 -1.09 4.18 -29.04 -0.12 -1.21 16 9 C 0.52 7.39 7.69 -10.98 -0.08 7.31 16 10 O -0.54 -9.77 15.45 5.56 0.09 -9.69 16 11 N -0.61 -8.50 2.97 -172.53 -0.51 -9.02 16 12 C 0.11 1.30 6.37 -3.49 -0.02 1.28 16 13 C -0.15 -2.29 5.34 -26.39 -0.14 -2.43 16 14 C 0.18 3.44 2.55 -67.89 -0.17 3.27 16 15 N -0.60 -14.44 2.81 -173.44 -0.49 -14.93 16 16 C 0.16 4.01 8.03 59.85 0.48 4.49 16 17 C -0.25 -6.78 9.59 -15.06 -0.14 -6.93 16 18 H 0.07 1.77 7.82 -52.49 -0.41 1.36 16 19 C 0.00 0.01 5.12 -17.43 -0.09 -0.08 16 20 N -0.91 -26.31 10.64 55.49 0.59 -25.72 16 21 Si 0.90 21.61 29.57 -169.99 -5.03 16.58 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C -0.14 -2.61 5.34 -26.64 -0.14 -2.75 16 26 C 0.11 1.76 6.43 -3.74 -0.02 1.74 16 27 C -0.10 -1.14 9.36 -39.59 -0.37 -1.51 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 36 H 0.10 0.83 7.88 -51.93 -0.41 0.42 16 37 H 0.10 0.94 7.65 -51.92 -0.40 0.54 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.72 5.93 -51.93 -0.31 0.41 16 40 H 0.06 1.03 6.72 -51.93 -0.35 0.68 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.21 7.86 -51.93 -0.41 0.80 16 43 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 44 H 0.04 1.12 7.22 -51.93 -0.37 0.74 16 45 H 0.00 -0.07 6.46 -51.93 -0.34 -0.41 16 46 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.06 1.15 7.72 -51.93 -0.40 0.75 16 48 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 49 H 0.08 1.38 7.01 -51.93 -0.36 1.02 16 50 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 51 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 401.05 15.07 6.04 6.04 Total: -1.00 -32.13 401.05 -10.87 -42.99 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -8.77 Total: -0.46 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -2.79 Total: -5.80 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: -0.41 Total: -49.66 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.13 -10.87 -42.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985499589.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.594 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds