Wall clock time and date at job start Tue Mar 31 2020 16:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.46880 * 2 1 4 4 C 1.38263 * 119.99809 * 270.27792 * 3 2 1 5 5 C 1.38215 * 119.99522 * 180.27566 * 4 3 2 6 6 C 1.38261 * 120.00218 * 359.47089 * 5 4 3 7 7 C 1.38213 * 119.99749 * 0.25025 * 6 5 4 8 8 C 1.50699 * 119.99582 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47263 * 89.99996 * 8 7 6 10 10 O 1.21279 * 120.00064 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00005 * 179.97438 * 9 8 7 12 12 C 1.46926 * 120.62582 * 359.72508 * 11 9 8 13 13 C 1.53623 * 108.54119 * 126.37099 * 12 11 9 14 14 C 1.53042 * 109.24541 * 54.84908 * 13 12 11 15 15 N 1.46496 * 109.46029 * 178.49115 * 14 13 12 16 16 C 1.46503 * 119.99999 * 60.07037 * 15 14 13 17 17 C 1.36940 * 120.00117 * 240.06951 * 15 14 13 18 18 H 1.07996 * 120.00107 * 22.99404 * 17 15 14 19 19 C 1.38814 * 119.99982 * 202.99111 * 17 15 14 20 20 N 1.31617 * 120.00023 * 11.64280 * 19 17 15 21 21 Si 1.86803 * 120.00065 * 191.64597 * 19 17 15 22 22 H 1.48498 * 109.46921 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47076 * 119.99897 * 21 19 17 24 24 H 1.48496 * 109.47073 * 240.00276 * 21 19 17 25 25 C 1.53032 * 109.53747 * 298.51232 * 14 13 12 26 26 C 1.46921 * 120.63087 * 179.97438 * 11 9 8 27 27 C 1.38206 * 120.00145 * 89.99849 * 3 2 1 28 28 H 1.08997 * 109.47270 * 300.00089 * 1 2 3 29 29 H 1.09001 * 109.47200 * 59.99999 * 1 2 3 30 30 H 1.09009 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47270 * 239.99911 * 2 1 3 32 32 H 1.09004 * 109.47313 * 119.99471 * 2 1 3 33 33 H 1.07996 * 120.00062 * 0.02562 * 4 3 2 34 34 H 1.07999 * 119.99589 * 179.73954 * 5 4 3 35 35 H 1.08003 * 119.99665 * 180.28062 * 6 5 4 36 36 H 1.09003 * 109.46729 * 210.00130 * 8 7 6 37 37 H 1.09007 * 109.47220 * 329.99981 * 8 7 6 38 38 H 1.09004 * 109.58406 * 246.19369 * 12 11 9 39 39 H 1.08999 * 109.59104 * 6.62121 * 12 11 9 40 40 H 1.08999 * 109.63069 * 294.85430 * 13 12 11 41 41 H 1.09000 * 109.43174 * 174.71823 * 13 12 11 42 42 H 1.08997 * 109.45926 * 58.53247 * 14 13 12 43 43 H 1.08999 * 109.47196 * 93.84211 * 16 15 14 44 44 H 1.09003 * 109.46790 * 213.84611 * 16 15 14 45 45 H 1.09003 * 109.47106 * 333.84124 * 16 15 14 46 46 H 0.97001 * 120.00152 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.50165 * 301.41116 * 25 14 13 48 48 H 1.09004 * 109.52451 * 181.33124 * 25 14 13 49 49 H 1.09004 * 109.58357 * 353.38152 * 26 11 9 50 50 H 1.09008 * 109.58168 * 113.65706 * 26 11 9 51 51 H 1.08004 * 120.00079 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2572 2.0745 -1.1974 5 6 2.7233 3.3757 -1.1974 6 6 2.9542 4.0273 0.0000 7 6 2.7238 3.3758 1.1969 8 6 2.9749 4.0863 2.5020 9 6 1.7191 4.7966 2.9370 10 8 0.7185 4.7319 2.2547 11 7 1.7076 5.5030 4.0848 12 6 2.9098 5.5847 4.9255 13 6 3.2267 7.0658 5.1821 14 6 1.9946 7.7491 5.7797 15 7 2.3031 9.1536 6.0598 16 6 2.7080 10.0459 4.9707 17 6 2.2130 9.6324 7.3396 18 1 2.2852 8.9535 8.1764 19 6 2.0289 10.9903 7.5613 20 7 1.7130 11.7837 6.5598 21 14 2.2296 11.6915 9.2810 22 1 2.5847 10.5994 10.2226 23 1 3.3092 12.7113 9.2769 24 1 0.9553 12.3213 9.7106 25 6 0.8334 7.6706 4.7860 26 6 0.4911 6.2014 4.5219 27 6 2.2625 2.0724 1.1969 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.0725 1.5671 -2.1326 34 1 2.9030 3.8849 -2.1327 35 1 3.3140 5.0457 -0.0001 36 1 3.2631 3.3596 3.2616 37 1 3.7769 4.8130 2.3716 38 1 2.7281 5.0777 5.8732 39 1 3.7478 5.1139 4.4116 40 1 3.4926 7.5515 4.2432 41 1 4.0599 7.1427 5.8806 42 1 1.7145 7.2474 6.7059 43 1 1.8325 10.5672 4.5835 44 1 3.4277 10.7735 5.3458 45 1 3.1650 9.4610 4.1726 46 1 1.5840 12.7325 6.7148 47 1 1.1217 8.1506 3.8508 48 1 -0.0371 8.1779 5.2021 49 1 -0.2672 6.1375 3.7414 50 1 0.1144 5.7419 5.4358 51 1 2.0829 1.5632 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985499589.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:30 Heat of formation + Delta-G solvation = -16.373355 kcal Electronic energy + Delta-G solvation = -28278.769387 eV Core-core repulsion = 24563.320708 eV Total energy + Delta-G solvation = -3715.448679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.38559 -40.18543 -38.85441 -36.67292 -35.33430 -34.01971 -33.37711 -32.02277 -31.43075 -30.36593 -28.59667 -28.03486 -26.22996 -24.79310 -24.16286 -23.85518 -22.88238 -21.70270 -20.80237 -19.65678 -18.75933 -18.18020 -17.44243 -16.98407 -16.83360 -16.72235 -16.01809 -15.84675 -15.71000 -15.12407 -15.11174 -14.78871 -14.69317 -14.47934 -14.42830 -14.03203 -13.91551 -13.83940 -13.67112 -13.15215 -13.10566 -12.93711 -12.86705 -12.77792 -12.65332 -12.57567 -12.34870 -12.18891 -12.10392 -12.02603 -11.81745 -11.68136 -11.61548 -11.57409 -11.22698 -10.85426 -10.61794 -9.65583 -9.63043 -9.47121 -8.75696 -7.80833 -5.29209 0.44665 0.53608 1.46529 1.47791 1.57961 1.65538 2.06373 2.51476 2.88242 3.32798 3.59455 3.67725 3.74570 3.85680 3.96566 4.02478 4.14393 4.21411 4.25451 4.30148 4.35346 4.39316 4.40499 4.51953 4.56712 4.58941 4.60840 4.71387 4.74239 4.79770 4.83249 4.84534 4.92805 5.01646 5.02050 5.07969 5.12010 5.21909 5.25114 5.25896 5.38149 5.39016 5.51977 5.59633 5.62227 5.68196 5.69686 5.72738 5.75569 6.16654 6.35098 6.47924 7.16917 7.20559 7.90032 8.34698 9.22691 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.030235 B = 0.002181 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.866946 B =12836.839607 C =13076.321918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.092 4.092 4 C -0.129 4.129 5 C -0.126 4.126 6 C -0.130 4.130 7 C -0.075 4.075 8 C -0.096 4.096 9 C 0.513 3.487 10 O -0.584 6.584 11 N -0.608 5.608 12 C 0.114 3.886 13 C -0.137 4.137 14 C 0.173 3.827 15 N -0.612 5.612 16 C 0.184 3.816 17 C -0.255 4.255 18 H 0.076 0.924 19 C -0.059 4.059 20 N -0.943 5.943 21 Si 0.968 3.032 22 H -0.262 1.262 23 H -0.294 1.294 24 H -0.296 1.296 25 C -0.131 4.131 26 C 0.124 3.876 27 C -0.117 4.117 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.122 0.878 36 H 0.132 0.868 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.053 0.947 41 H 0.078 0.922 42 H 0.063 0.937 43 H -0.006 1.006 44 H 0.015 0.985 45 H 0.026 0.974 46 H 0.246 0.754 47 H 0.039 0.961 48 H 0.049 0.951 49 H 0.071 0.929 50 H 0.080 0.920 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.991 -24.505 -11.663 27.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.092 4.092 4 C -0.147 4.147 5 C -0.144 4.144 6 C -0.148 4.148 7 C -0.075 4.075 8 C -0.135 4.135 9 C 0.303 3.697 10 O -0.464 6.464 11 N -0.341 5.341 12 C -0.008 4.008 13 C -0.177 4.177 14 C 0.066 3.934 15 N -0.334 5.334 16 C 0.039 3.961 17 C -0.386 4.386 18 H 0.093 0.907 19 C -0.254 4.254 20 N -0.590 5.590 21 Si 0.797 3.203 22 H -0.186 1.186 23 H -0.221 1.221 24 H -0.224 1.224 25 C -0.171 4.171 26 C 0.001 3.999 27 C -0.135 4.135 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.140 0.860 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.107 0.893 39 H 0.135 0.865 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.012 0.988 44 H 0.034 0.966 45 H 0.044 0.956 46 H 0.055 0.945 47 H 0.058 0.942 48 H 0.067 0.933 49 H 0.089 0.911 50 H 0.098 0.902 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.458 -24.370 -11.985 27.521 hybrid contribution -0.387 1.628 0.778 1.845 sum 4.071 -22.742 -11.207 25.678 Atomic orbital electron populations 1.21739 0.94903 1.02280 1.01421 1.20569 0.95945 0.91502 1.03816 1.20159 0.98663 0.97362 0.92986 1.21282 1.00042 0.95133 0.98255 1.21355 0.99370 0.95373 0.98331 1.21201 1.01107 0.99839 0.92646 1.19496 0.99445 0.94390 0.94195 1.20775 0.95456 1.00929 0.96324 1.21112 0.90468 0.78510 0.79611 1.90682 1.37336 1.63698 1.54660 1.48270 1.13553 1.49705 1.22560 1.22070 0.86787 0.96035 0.95929 1.22378 0.98880 0.95310 1.01101 1.20542 0.92639 0.84302 0.95915 1.44225 1.78167 1.06302 1.04744 1.20390 0.95888 0.91286 0.88581 1.19638 1.42099 0.91985 0.84836 0.90672 1.25834 1.00922 0.97918 1.00706 1.70257 1.53215 1.03899 1.31638 0.85175 0.76560 0.78255 0.80301 1.18632 1.22088 1.22359 1.22269 0.99892 0.95460 0.99511 1.21424 0.87248 0.91076 1.00173 1.21051 0.99604 0.94507 0.98367 0.93967 0.93159 0.90818 0.89707 0.90212 0.84515 0.84595 0.86033 0.85054 0.85999 0.89252 0.86468 0.92858 0.90324 0.91836 0.98787 0.96624 0.95579 0.94522 0.94183 0.93258 0.91054 0.90180 0.85523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.89 71.98 0.71 -1.38 16 2 C -0.08 -1.10 6.06 29.85 0.18 -0.92 16 3 C -0.09 -1.72 5.13 -19.87 -0.10 -1.82 16 4 C -0.13 -2.38 9.70 22.27 0.22 -2.16 16 5 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 6 C -0.13 -2.85 9.70 22.27 0.22 -2.64 16 7 C -0.07 -1.62 4.37 -19.87 -0.09 -1.71 16 8 C -0.10 -1.73 4.18 29.10 0.12 -1.61 16 9 C 0.51 13.72 7.69 87.66 0.67 14.39 16 10 O -0.58 -20.85 15.45 -3.03 -0.05 -20.90 16 11 N -0.61 -15.58 2.97 -818.14 -2.43 -18.01 16 12 C 0.11 2.27 6.37 86.51 0.55 2.83 16 13 C -0.14 -3.90 5.34 30.82 0.16 -3.73 16 14 C 0.17 6.48 2.55 45.02 0.11 6.59 16 15 N -0.61 -29.80 2.81 -702.64 -1.97 -31.77 16 16 C 0.18 9.16 8.03 127.77 1.03 10.19 16 17 C -0.26 -13.67 9.59 84.03 0.81 -12.87 16 18 H 0.08 3.85 7.82 -2.91 -0.02 3.82 16 19 C -0.06 -3.32 5.12 84.86 0.43 -2.88 16 20 N -0.94 -56.41 10.64 21.65 0.23 -56.18 16 21 Si 0.97 44.84 29.57 68.60 2.03 46.87 16 22 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 25 C -0.13 -4.80 5.34 30.65 0.16 -4.63 16 26 C 0.12 3.73 6.43 86.35 0.55 4.28 16 27 C -0.12 -2.40 9.36 22.27 0.21 -2.19 16 28 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 32 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 33 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.12 2.47 8.06 -2.91 -0.02 2.45 16 36 H 0.13 1.57 7.88 -2.39 -0.02 1.55 16 37 H 0.12 1.75 7.65 -2.38 -0.02 1.74 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.12 1.51 5.93 -2.39 -0.01 1.50 16 40 H 0.05 1.63 6.72 -2.39 -0.02 1.61 16 41 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.06 2.36 7.86 -2.39 -0.02 2.34 16 43 H -0.01 -0.35 7.42 -2.39 -0.02 -0.36 16 44 H 0.01 0.82 7.22 -2.39 -0.02 0.81 16 45 H 0.03 1.12 6.46 -2.39 -0.02 1.10 16 46 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 47 H 0.04 1.59 7.72 -2.39 -0.02 1.57 16 48 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.07 2.36 7.01 -2.39 -0.02 2.34 16 50 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 51 H 0.13 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -72.15 401.05 4.88 -67.27 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.89 Total: 15.25 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 6.18 Total: -2.53 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -4.17 Total: -105.97 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.05 Total: -20.90 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -72.15 4.88 -67.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985499589.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.900 kcal (2) G-P(sol) polarization free energy of solvation -72.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds