Wall clock time and date at job start Tue Mar 31 2020 16:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47085 * 2 1 4 4 C 1.38237 * 120.00519 * 90.00115 * 3 2 1 5 5 C 1.38235 * 119.99998 * 180.27444 * 4 3 2 6 6 C 1.38230 * 120.00018 * 359.46755 * 5 4 3 7 7 C 1.50708 * 119.99843 * 180.28333 * 6 5 4 8 8 C 1.50701 * 109.46595 * 270.26947 * 7 6 5 9 9 O 1.21276 * 120.00368 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99905 * 179.97438 * 8 7 6 11 11 C 1.46931 * 120.63153 * 359.72588 * 10 8 7 12 12 C 1.53627 * 108.54133 * 126.36261 * 11 10 8 13 13 C 1.53037 * 109.24038 * 54.86294 * 12 11 10 14 14 N 1.46507 * 109.45868 * 178.48953 * 13 12 11 15 15 C 1.46494 * 120.00216 * 60.06314 * 14 13 12 16 16 C 1.36940 * 119.99647 * 240.06407 * 14 13 12 17 17 H 1.08000 * 119.99947 * 22.98901 * 16 14 13 18 18 C 1.38813 * 119.99952 * 202.98804 * 16 14 13 19 19 N 1.31618 * 119.99537 * 11.64778 * 18 16 14 20 20 Si 1.86801 * 120.00170 * 191.64802 * 18 16 14 21 21 H 1.48504 * 109.46676 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46862 * 119.99915 * 20 18 16 23 23 H 1.48493 * 109.47257 * 240.00092 * 20 18 16 24 24 C 1.53043 * 109.53797 * 298.50450 * 13 12 11 25 25 C 1.46931 * 120.63240 * 179.97438 * 10 8 7 26 26 C 1.38227 * 120.00267 * 0.55122 * 6 5 4 27 27 C 1.38234 * 120.00044 * 270.01847 * 3 2 1 28 28 H 1.08997 * 109.47685 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47314 * 300.00261 * 1 2 3 30 30 H 1.08996 * 109.47029 * 59.99744 * 1 2 3 31 31 H 1.08995 * 109.46918 * 239.99376 * 2 1 3 32 32 H 1.09004 * 109.46511 * 119.99593 * 2 1 3 33 33 H 1.08001 * 119.99386 * 359.97438 * 4 3 2 34 34 H 1.08009 * 119.99448 * 179.72258 * 5 4 3 35 35 H 1.08997 * 109.47196 * 30.27029 * 7 6 5 36 36 H 1.08995 * 109.46817 * 150.27534 * 7 6 5 37 37 H 1.08998 * 109.58839 * 246.19591 * 11 10 8 38 38 H 1.08998 * 109.58332 * 6.62667 * 11 10 8 39 39 H 1.08996 * 109.63676 * 294.86544 * 12 11 10 40 40 H 1.09007 * 109.42397 * 174.72506 * 12 11 10 41 41 H 1.08999 * 109.46316 * 58.52694 * 13 12 11 42 42 H 1.09001 * 109.47098 * 93.84611 * 15 14 13 43 43 H 1.09001 * 109.47269 * 213.84405 * 15 14 13 44 44 H 1.09002 * 109.47348 * 333.84857 * 15 14 13 45 45 H 0.97002 * 119.99722 * 180.02562 * 19 18 16 46 46 H 1.09001 * 109.49844 * 301.41929 * 24 13 12 47 47 H 1.08999 * 109.52610 * 181.33799 * 24 13 12 48 48 H 1.09001 * 109.58745 * 353.38024 * 25 10 8 49 49 H 1.08999 * 109.58102 * 113.66096 * 25 10 8 50 50 H 1.07999 * 120.00242 * 179.72487 * 26 6 5 51 51 H 1.08007 * 119.99663 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0725 1.1971 5 6 2.7181 3.3777 1.1970 6 6 2.9535 4.0275 -0.0001 7 6 3.4561 5.4483 -0.0002 8 6 2.2840 6.3956 0.0002 9 8 1.1522 5.9599 0.0010 10 7 2.4936 7.7269 0.0008 11 6 3.8589 8.2698 0.0070 12 6 3.9992 9.2524 -1.1656 13 6 2.9009 10.3136 -1.0685 14 7 3.0521 11.2742 -2.1643 15 6 2.9795 10.8172 -3.5543 16 6 3.2614 12.5993 -1.8892 17 1 3.6781 12.8939 -0.9374 18 6 2.9380 13.5637 -2.8338 19 7 2.2255 13.2365 -3.8909 20 14 3.5140 15.3258 -2.6044 21 1 4.2931 15.4319 -1.3446 22 1 4.3719 15.7193 -3.7510 23 1 2.3357 16.2269 -2.5356 24 6 1.5295 9.6412 -1.1656 25 6 1.3611 8.6630 0.0006 26 6 2.7228 3.3760 -1.1972 27 6 2.2623 2.0725 -1.1971 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0824 1.5635 2.1324 34 1 2.8939 3.8884 2.1324 35 1 4.0619 5.6194 0.8896 36 1 4.0613 5.6195 -0.8904 37 1 4.0409 8.7903 0.9473 38 1 4.5758 7.4569 -0.1078 39 1 3.9026 8.7139 -2.1083 40 1 4.9759 9.7344 -1.1197 41 1 2.9829 10.8351 -0.1148 42 1 1.9589 10.9284 -3.9204 43 1 3.6530 11.4146 -4.1688 44 1 3.2725 9.7687 -3.6078 45 1 1.9998 13.9104 -4.5512 46 1 1.4561 9.0990 -2.1084 47 1 0.7479 10.3996 -1.1204 48 1 0.4296 8.1097 -0.1184 49 1 1.3417 9.2131 0.9414 50 1 2.9025 3.8852 -2.1325 51 1 2.0816 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985684946.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:33 Heat of formation + Delta-G solvation = -16.390610 kcal Electronic energy + Delta-G solvation = -28134.614438 eV Core-core repulsion = 24419.165011 eV Total energy + Delta-G solvation = -3715.449427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.37679 -40.18262 -38.86126 -36.67521 -35.52702 -33.96934 -32.70757 -31.77800 -31.62980 -31.33133 -28.25265 -28.03168 -26.24883 -24.49024 -24.00004 -23.61517 -23.44887 -21.67119 -20.99420 -19.70865 -18.75978 -18.17812 -17.28912 -16.97232 -16.84794 -16.55890 -16.02713 -15.87687 -15.70455 -15.12333 -15.10835 -14.71698 -14.71035 -14.51015 -14.39947 -14.18541 -13.90807 -13.88842 -13.74596 -13.15537 -13.12033 -12.90845 -12.81766 -12.72300 -12.64562 -12.59072 -12.34073 -12.17515 -12.05391 -12.02204 -11.81632 -11.69495 -11.63456 -11.57998 -11.22524 -10.83883 -10.61654 -9.76531 -9.62822 -9.38340 -8.75586 -7.80809 -5.29154 0.42352 0.56046 1.46492 1.47754 1.57932 1.66092 2.06682 2.51489 2.88080 3.32822 3.59778 3.69055 3.76358 3.91108 3.95153 4.00992 4.14326 4.17947 4.21590 4.21988 4.35921 4.40715 4.47752 4.52305 4.56952 4.59314 4.62167 4.73448 4.75599 4.79264 4.83526 4.84920 4.92948 5.02046 5.05746 5.07418 5.11017 5.20695 5.25383 5.25917 5.37712 5.39150 5.51994 5.54699 5.62318 5.68462 5.71444 5.72827 5.76449 6.16624 6.35134 6.48451 7.16982 7.21105 7.90120 8.34774 9.22694 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.002092 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.807305 B =13380.303449 C =13542.798584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.093 4.093 4 C -0.128 4.128 5 C -0.114 4.114 6 C -0.084 4.084 7 C -0.095 4.095 8 C 0.513 3.487 9 O -0.584 6.584 10 N -0.608 5.608 11 C 0.114 3.886 12 C -0.137 4.137 13 C 0.172 3.828 14 N -0.612 5.612 15 C 0.184 3.816 16 C -0.256 4.256 17 H 0.076 0.924 18 C -0.059 4.059 19 N -0.943 5.943 20 Si 0.968 3.032 21 H -0.262 1.262 22 H -0.294 1.294 23 H -0.296 1.296 24 C -0.131 4.131 25 C 0.124 3.876 26 C -0.120 4.120 27 C -0.130 4.130 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.064 0.936 42 H -0.006 1.006 43 H 0.015 0.985 44 H 0.026 0.974 45 H 0.245 0.755 46 H 0.039 0.961 47 H 0.049 0.951 48 H 0.071 0.929 49 H 0.080 0.920 50 H 0.122 0.878 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.912 -24.713 11.264 27.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.093 4.093 4 C -0.145 4.145 5 C -0.132 4.132 6 C -0.084 4.084 7 C -0.134 4.134 8 C 0.303 3.697 9 O -0.464 6.464 10 N -0.341 5.341 11 C -0.008 4.008 12 C -0.177 4.177 13 C 0.066 3.934 14 N -0.334 5.334 15 C 0.039 3.961 16 C -0.386 4.386 17 H 0.093 0.907 18 C -0.254 4.254 19 N -0.590 5.590 20 Si 0.797 3.203 21 H -0.186 1.186 22 H -0.221 1.221 23 H -0.224 1.224 24 C -0.171 4.171 25 C 0.001 3.999 26 C -0.138 4.138 27 C -0.148 4.148 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.139 0.861 37 H 0.108 0.892 38 H 0.135 0.865 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.012 0.988 43 H 0.034 0.966 44 H 0.044 0.956 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.089 0.911 49 H 0.098 0.902 50 H 0.140 0.860 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.294 -24.821 11.142 27.544 hybrid contribution -0.374 1.649 -0.727 1.840 sum 3.920 -23.172 10.416 25.706 Atomic orbital electron populations 1.21745 0.94778 1.02327 1.01534 1.20570 0.96057 0.91496 1.03755 1.20193 0.98625 0.97405 0.93055 1.21238 1.00055 0.94933 0.98320 1.21208 0.99106 0.95166 0.97745 1.19493 1.00456 0.94663 0.93797 1.20766 0.95774 0.89449 1.07406 1.21136 0.91047 0.82595 0.74952 1.90680 1.26427 1.77460 1.51869 1.48277 1.08269 1.05166 1.72397 1.22071 0.81698 0.98121 0.98921 1.22378 0.99878 0.96891 0.98519 1.20553 0.92292 0.89524 0.91081 1.44217 1.83934 1.03954 1.01277 1.20386 0.97323 0.93380 0.85042 1.19646 1.33798 0.83258 1.01882 0.90653 1.25832 0.99358 1.01780 0.98408 1.70260 1.41581 1.33524 1.13653 0.85176 0.77160 0.80275 0.77684 1.18625 1.22087 1.22373 1.22269 0.99768 0.97492 0.97596 1.21422 0.89797 0.90382 0.98323 1.21191 0.99462 0.95328 0.97822 1.21208 1.00237 0.94926 0.98427 0.90850 0.93268 0.93576 0.90211 0.89868 0.84556 0.85048 0.84988 0.86085 0.89241 0.86455 0.92867 0.90324 0.91822 0.98802 0.96637 0.95585 0.94527 0.94196 0.93261 0.91066 0.90174 0.86015 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.89 71.98 0.71 -1.27 16 2 C -0.08 -1.07 6.06 29.85 0.18 -0.89 16 3 C -0.09 -1.72 5.13 -19.87 -0.10 -1.82 16 4 C -0.13 -2.38 9.70 22.27 0.22 -2.16 16 5 C -0.11 -2.29 9.70 22.27 0.22 -2.08 16 6 C -0.08 -1.80 4.37 -19.87 -0.09 -1.88 16 7 C -0.09 -1.70 4.18 29.10 0.12 -1.58 16 8 C 0.51 13.67 7.69 87.66 0.67 14.34 16 9 O -0.58 -20.85 15.45 -3.02 -0.05 -20.89 16 10 N -0.61 -15.56 2.97 -818.13 -2.43 -17.99 16 11 C 0.11 2.27 6.37 86.51 0.55 2.82 16 12 C -0.14 -3.89 5.34 30.82 0.16 -3.73 16 13 C 0.17 6.46 2.55 45.02 0.11 6.57 16 14 N -0.61 -29.75 2.81 -702.62 -1.97 -31.72 16 15 C 0.18 9.17 8.03 127.77 1.03 10.19 16 16 C -0.26 -13.69 9.59 84.03 0.81 -12.88 16 17 H 0.08 3.85 7.82 -2.91 -0.02 3.83 16 18 C -0.06 -3.31 5.12 84.86 0.43 -2.88 16 19 N -0.94 -56.43 10.64 21.65 0.23 -56.20 16 20 Si 0.97 44.85 29.57 68.60 2.03 46.88 16 21 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 23 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 24 C -0.13 -4.79 5.34 30.66 0.16 -4.63 16 25 C 0.12 3.72 6.43 86.35 0.55 4.28 16 26 C -0.12 -2.64 9.70 22.27 0.22 -2.43 16 27 C -0.13 -2.62 9.70 22.27 0.22 -2.40 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.89 8.09 -2.39 -0.02 0.88 16 32 H 0.08 0.87 8.09 -2.38 -0.02 0.86 16 33 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.13 1.54 7.88 -2.39 -0.02 1.52 16 36 H 0.12 1.73 7.65 -2.39 -0.02 1.72 16 37 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.12 1.51 5.93 -2.39 -0.01 1.49 16 39 H 0.05 1.62 6.72 -2.39 -0.02 1.61 16 40 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 41 H 0.06 2.37 7.86 -2.39 -0.02 2.35 16 42 H -0.01 -0.36 7.42 -2.39 -0.02 -0.37 16 43 H 0.01 0.82 7.22 -2.39 -0.02 0.80 16 44 H 0.03 1.11 6.46 -2.39 -0.02 1.10 16 45 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 46 H 0.04 1.59 7.72 -2.39 -0.02 1.57 16 47 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.07 2.35 7.01 -2.39 -0.02 2.34 16 49 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.12 2.48 8.06 -2.91 -0.02 2.46 16 51 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -72.15 401.05 4.88 -67.27 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.89 Total: 15.08 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 6.18 Total: -2.42 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -4.17 Total: -105.92 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.05 Total: -20.89 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -72.15 4.88 -67.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985684946.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.882 kcal (2) G-P(sol) polarization free energy of solvation -72.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds