Wall clock time and date at job start Tue Mar 31 2020 16:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47166 * 2 1 4 4 C 1.38232 * 120.00111 * 89.99631 * 3 2 1 5 5 C 1.38235 * 119.99949 * 180.02562 * 4 3 2 6 6 C 1.38236 * 119.99853 * 0.02562 * 5 4 3 7 7 C 1.50709 * 119.99823 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.46840 * 89.99998 * 7 6 5 9 9 C 1.50695 * 109.47040 * 179.97438 * 8 7 6 10 10 O 1.21285 * 119.99833 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00393 * 180.02562 * 9 8 7 12 12 C 1.47431 * 125.64300 * 359.97064 * 11 9 8 13 13 C 1.54914 * 104.82819 * 204.17319 * 12 11 9 14 14 C 1.55157 * 101.58180 * 322.98999 * 13 12 11 15 15 H 1.09002 * 110.72219 * 277.13982 * 14 13 12 16 16 N 1.46505 * 110.71610 * 154.04431 * 14 13 12 17 17 C 1.36930 * 119.99608 * 88.84878 * 16 14 13 18 18 H 1.08002 * 120.00527 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99561 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00385 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99883 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47152 * 60.00033 * 21 19 17 23 23 H 1.48500 * 109.47162 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47099 * 299.99706 * 21 19 17 25 25 C 1.47479 * 125.59759 * 180.02562 * 11 9 8 26 26 H 1.09001 * 109.96484 * 59.58048 * 25 11 9 27 27 C 1.52997 * 110.03102 * 298.27234 * 25 11 9 28 28 C 1.38231 * 119.99987 * 0.25327 * 6 5 4 29 29 C 1.38232 * 119.99594 * 270.01551 * 3 2 1 30 30 H 1.08997 * 109.46823 * 60.00112 * 1 2 3 31 31 H 1.09001 * 109.47111 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47172 * 300.00311 * 1 2 3 33 33 H 1.08995 * 109.47857 * 239.99288 * 2 1 3 34 34 H 1.09013 * 109.47066 * 119.99475 * 2 1 3 35 35 H 1.07999 * 120.00410 * 0.02562 * 4 3 2 36 36 H 1.07998 * 119.99986 * 179.97438 * 5 4 3 37 37 H 1.08998 * 109.47127 * 330.00285 * 7 6 5 38 38 H 1.09003 * 109.46702 * 209.99988 * 7 6 5 39 39 H 1.08998 * 109.47026 * 60.00225 * 8 7 6 40 40 H 1.09002 * 109.47133 * 299.99952 * 8 7 6 41 41 H 1.08999 * 110.36561 * 85.33459 * 12 11 9 42 42 H 1.09000 * 110.45999 * 323.05707 * 12 11 9 43 43 H 1.09004 * 111.00264 * 204.91514 * 13 12 11 44 44 H 1.09001 * 111.00188 * 81.06687 * 13 12 11 45 45 H 0.96995 * 119.99603 * 268.83481 * 16 14 13 46 46 H 0.97001 * 119.99920 * 180.02562 * 20 19 17 47 47 H 1.09000 * 109.47185 * 302.38640 * 27 25 11 48 48 H 1.08996 * 109.47557 * 62.38682 * 27 25 11 49 49 H 1.09002 * 109.47281 * 182.38957 * 27 25 11 50 50 H 1.08002 * 120.00142 * 179.73373 * 28 6 5 51 51 H 1.07998 * 120.00370 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7229 3.3760 1.1971 6 6 2.9524 4.0279 -0.0001 7 6 3.4537 5.4492 -0.0002 8 6 4.9837 5.4503 -0.0007 9 6 5.4849 6.8714 -0.0014 10 8 4.6961 7.7927 -0.0019 11 7 6.8098 7.1187 -0.0025 12 6 7.8742 6.0986 -0.0025 13 6 9.1062 6.8111 0.6094 14 6 8.9617 8.2409 0.0243 15 1 9.3754 8.2890 -0.9830 16 7 9.6081 9.2253 0.8957 17 6 10.9325 9.5271 0.7231 18 1 11.5007 9.0393 -0.0551 19 6 11.5449 10.4603 1.5485 20 7 10.8524 11.0552 2.4966 21 14 13.3519 10.8716 1.3136 22 1 13.5634 11.4092 -0.0545 23 1 13.7618 11.8898 2.3138 24 1 14.1667 9.6434 1.4943 25 6 7.4336 8.4551 -0.0027 26 1 7.1218 9.0115 0.8812 27 6 7.0372 9.2183 -1.2681 28 6 2.7166 3.3781 -1.1972 29 6 2.2624 2.0725 -1.1972 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 2.0830 1.5634 2.1325 36 1 2.9025 3.8853 2.1323 37 1 3.0903 5.9626 0.8900 38 1 3.0896 5.9628 -0.8900 39 1 5.3470 4.9368 -0.8909 40 1 5.3477 4.9366 0.8891 41 1 8.0899 5.7755 -1.0209 42 1 7.5850 5.2461 0.6121 43 1 10.0331 6.3443 0.2759 44 1 9.0479 6.8266 1.6977 45 1 9.0978 9.6632 1.5947 46 1 11.2803 11.7075 3.0731 47 1 7.3355 8.6456 -2.1463 48 1 5.9574 9.3659 -1.2802 49 1 7.5365 10.1872 -1.2795 50 1 2.8917 3.8889 -2.1326 51 1 2.0818 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987511104.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:51 Heat of formation + Delta-G solvation = -20.503505 kcal Electronic energy + Delta-G solvation = -27399.976249 eV Core-core repulsion = 23684.348474 eV Total energy + Delta-G solvation = -3715.627776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.13468 -39.61695 -37.51108 -35.33742 -34.11748 -32.78149 -31.57009 -31.15167 -30.87688 -29.48602 -28.56214 -25.28510 -25.19196 -23.22915 -22.96358 -22.90907 -21.97178 -20.64990 -20.03258 -18.68413 -17.28011 -16.99738 -16.27167 -16.14773 -15.85362 -15.31839 -15.07250 -14.79881 -14.30939 -14.04953 -13.93943 -13.61558 -13.60910 -13.40047 -13.36576 -13.14422 -12.96875 -12.70682 -12.38790 -12.17751 -12.02002 -11.86159 -11.71670 -11.65709 -11.58117 -11.23717 -11.16434 -11.06481 -10.99361 -10.96109 -10.83949 -10.58912 -10.27701 -10.03941 -9.77548 -9.54158 -9.14320 -8.95191 -8.71391 -8.38132 -7.04439 -5.82474 -3.13030 1.08571 1.18212 2.82939 3.15705 3.40692 3.45431 3.46505 3.52674 4.38536 4.50072 4.52681 4.53936 4.76333 4.78272 4.88942 4.97822 4.99168 5.01633 5.05659 5.16930 5.25252 5.27612 5.31519 5.35759 5.44825 5.49681 5.51685 5.58453 5.60501 5.67805 5.69865 5.75402 5.79802 5.84610 5.90482 5.94930 6.04161 6.10276 6.13095 6.20412 6.30022 6.37163 6.45576 6.46205 6.58251 6.61600 6.74083 6.79073 6.91823 7.63965 7.80067 8.34315 8.38290 9.46183 10.00791 10.35593 11.39556 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.028877 B = 0.001863 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.401089 B =15024.746703 C =15356.843810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.116 4.116 5 C -0.113 4.113 6 C -0.083 4.083 7 C -0.065 4.065 8 C -0.129 4.129 9 C 0.524 3.476 10 O -0.546 6.546 11 N -0.611 5.611 12 C 0.099 3.901 13 C -0.156 4.156 14 C 0.176 3.824 15 H 0.065 0.935 16 N -0.714 5.714 17 C -0.245 4.245 18 H 0.072 0.928 19 C -0.009 4.009 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.126 3.874 26 H 0.077 0.923 27 C -0.153 4.153 28 C -0.113 4.113 29 C -0.117 4.117 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.386 0.614 46 H 0.257 0.743 47 H 0.049 0.951 48 H 0.061 0.939 49 H 0.069 0.931 50 H 0.122 0.878 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.908 -21.792 -6.480 28.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.134 4.134 5 C -0.131 4.131 6 C -0.083 4.083 7 C -0.103 4.103 8 C -0.169 4.169 9 C 0.313 3.687 10 O -0.424 6.424 11 N -0.345 5.345 12 C -0.025 4.025 13 C -0.197 4.197 14 C 0.064 3.936 15 H 0.083 0.917 16 N -0.355 5.355 17 C -0.376 4.376 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C 0.023 3.977 26 H 0.095 0.905 27 C -0.211 4.211 28 C -0.131 4.131 29 C -0.135 4.135 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.220 0.780 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.080 0.920 49 H 0.088 0.912 50 H 0.140 0.860 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.215 -21.248 -6.514 28.735 hybrid contribution 0.998 0.284 0.209 1.058 sum -17.217 -20.964 -6.305 27.851 Atomic orbital electron populations 1.21749 0.94773 1.01632 1.02254 1.20538 0.96151 0.92776 1.02763 1.19883 0.99562 0.96241 0.93278 1.21007 1.00051 0.94899 0.97468 1.21087 0.99445 0.94759 0.97765 1.19936 0.99064 0.96105 0.93190 1.20341 0.93394 0.92000 1.04532 1.21612 0.96503 0.94343 1.04401 1.20269 0.80777 0.91327 0.76320 1.90682 1.54427 1.46641 1.50623 1.48737 1.04781 1.08632 1.72321 1.22369 0.88269 0.91333 1.00486 1.23569 0.95625 0.99057 1.01479 1.21248 0.88578 0.88775 0.95021 0.91686 1.42337 1.09157 1.46456 1.37517 1.19165 0.86183 1.18782 1.13485 0.91044 1.24766 0.98234 0.99345 0.98255 1.69656 1.35659 1.30754 1.21661 0.86254 0.84869 0.77744 0.77192 1.21193 1.21671 1.21214 1.21997 0.94132 0.82694 0.98892 0.90519 1.22023 1.02008 1.00543 0.96533 1.21068 0.99595 0.94736 0.97701 1.20998 1.00165 0.94869 0.97442 0.92569 0.92461 0.92555 0.91132 0.91118 0.86260 0.85978 0.90149 0.90199 0.89087 0.89019 0.91769 0.91354 0.90594 0.90677 0.77995 0.93321 0.93181 0.92032 0.91170 0.86041 0.86293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.89 37.16 0.37 -0.44 16 2 C -0.08 -0.51 6.06 -27.88 -0.17 -0.68 16 3 C -0.09 -0.72 5.13 -104.63 -0.54 -1.26 16 4 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 5 C -0.11 -1.03 9.70 -39.58 -0.38 -1.41 16 6 C -0.08 -0.80 5.13 -104.62 -0.54 -1.33 16 7 C -0.06 -0.68 4.64 -27.88 -0.13 -0.81 16 8 C -0.13 -1.38 4.69 -27.88 -0.13 -1.51 16 9 C 0.52 7.86 7.65 -10.99 -0.08 7.78 16 10 O -0.55 -10.03 15.05 5.55 0.08 -9.94 16 11 N -0.61 -9.30 3.08 -162.67 -0.50 -9.81 16 12 C 0.10 1.27 6.69 -2.52 -0.02 1.25 16 13 C -0.16 -2.52 6.77 -24.58 -0.17 -2.68 16 14 C 0.18 3.34 3.12 -66.09 -0.21 3.14 16 15 H 0.07 1.24 7.81 -51.93 -0.41 0.84 16 16 N -0.71 -17.29 5.24 -51.65 -0.27 -17.56 16 17 C -0.25 -6.55 9.97 -15.06 -0.15 -6.70 16 18 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 20 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 21 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.13 2.25 3.23 -66.70 -0.22 2.03 16 26 H 0.08 1.55 7.70 -51.93 -0.40 1.15 16 27 C -0.15 -2.58 9.11 37.16 0.34 -2.25 16 28 C -0.11 -1.01 9.70 -39.58 -0.38 -1.39 16 29 C -0.12 -0.96 9.70 -39.58 -0.38 -1.35 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 34 H 0.07 0.39 8.09 -51.92 -0.42 -0.03 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.08 0.91 8.04 -51.93 -0.42 0.50 16 38 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 0.89 7.85 -51.93 -0.41 0.49 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.73 7.48 -51.93 -0.39 0.34 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.39 10.11 7.54 -40.82 -0.31 9.80 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.06 1.07 6.93 -51.93 -0.36 0.71 16 49 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 50 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 51 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 412.91 15.07 6.22 6.22 Total: -1.00 -31.10 412.91 -11.02 -42.12 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -8.99 Total: 8.33 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -3.27 Total: -9.35 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.05 Total: -54.21 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.10 -11.02 -42.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987511104.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.615 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds